mRNA_E-fasciculatus_F_contig1332.2494.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1332.2494.1
Unique NamemRNA_E-fasciculatus_F_contig1332.2494.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1332.2494.1 vs. uniprot
Match: A0A6H5KKG1_9PHAE (VPS13_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKG1_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 1.290e-34
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:   82 MRAFSDILLGPLKAVLMRVLQQQLSKYIHNIELEELGLMGGDVVLENLELRKDVLHDIGGISTDYDFSR 288
            MRAFSDILLGPLKAVLMRVLQQQLSKYIHNIELEELGLMGGDVVLENLELRKDVLHDIGGISTDYDFSR
Sbjct:    1 MRAFSDILLGPLKAVLMRVLQQQLSKYIHNIELEELGLMGGDVVLENLELRKDVLHDIGGISTDYDFSR 69
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BLAST of mRNA_E-fasciculatus_F_contig1332.2494.1 vs. uniprot
Match: A0A2P4XIP8_9STRA (Vacuolar protein sorting-associated protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XIP8_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 6.650e-9
Identity = 31/62 (50.00%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:  103 LLGPLKAVLMRVLQQQLSKYIHNIELEELGLMGGDVVLENLELRKDVLHDIGGISTDYDFSR 288
            LL PL+  + + LQ  LSKYI +I+LE LGL GGD+VL +LE+++ VL +   I + +DFSR
Sbjct:    4 LLSPLRGYIAQNLQFYLSKYIEDIQLEGLGLFGGDLVLNDLEIKRHVLRESLEIPSSFDFSR 65
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BLAST of mRNA_E-fasciculatus_F_contig1332.2494.1 vs. uniprot
Match: K3X2H6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2H6_GLOUD)

HSP 1 Score: 61.2 bits (147), Expect = 7.610e-9
Identity = 32/64 (50.00%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:   97 DILLGPLKAVLMRVLQQQLSKYIHNIELEELGLMGGDVVLENLELRKDVLHDIGGISTDYDFSR 288
            DIL  PL+  + + LQ  LSKYI  I+LE LG+ GGD+VL +LE+++DVL +   I + +DFSR
Sbjct:    3 DILSSPLRGYIAQNLQFYLSKYIEGIQLEGLGIFGGDLVLNDLEIKRDVLLESLEIPSSFDFSR 66
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BLAST of mRNA_E-fasciculatus_F_contig1332.2494.1 vs. uniprot
Match: F0VZU0_9STRA (Uncharacterized protein AlNc14C3G419 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VZU0_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.540e-8
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:   97 DILLGPLKAVLMRVLQQQLSKYIHNIELEELGLMGGDVVLENLELRKDVLHDIGGISTDYDFSR 288
            DIL  P+++ + + LQ  LSKYI  I LE LGL GGD+VL +LE+++ VL +   IS  +DFSR
Sbjct:    3 DILSSPIRSYIAQTLQFYLSKYIEGIHLEGLGLFGGDLVLNDLEIKRHVLLESLEISPSFDFSR 66
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BLAST of mRNA_E-fasciculatus_F_contig1332.2494.1 vs. uniprot
Match: A0A3F2RKP7_9STRA (Chorein N-terminal domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RKP7_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.660e-8
Identity = 30/62 (48.39%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:  103 LLGPLKAVLMRVLQQQLSKYIHNIELEELGLMGGDVVLENLELRKDVLHDIGGISTDYDFSR 288
            +L PL+  + + LQ  LSKYI +I+LE LGL GGD+VL +LE+++ VL +   I + +DFSR
Sbjct:    4 ILSPLRGYIAQNLQFYLSKYIEDIQLEGLGLFGGDLVLNDLEIKRHVLRESLDIPSSFDFSR 65
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BLAST of mRNA_E-fasciculatus_F_contig1332.2494.1 vs. uniprot
Match: A0A0W8D6K5_PHYNI (Major facilitator Superfamily n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D6K5_PHYNI)

HSP 1 Score: 58.9 bits (141), Expect = 2.740e-8
Identity = 31/62 (50.00%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:  103 LLGPLKAVLMRVLQQQLSKYIHNIELEELGLMGGDVVLENLELRKDVLHDIGGISTDYDFSR 288
            LL PL+  + + LQ  LSKYI +I+LE LGL GGD+VL +LE+++ VL +   I + +DFSR
Sbjct:    4 LLSPLRGYIAQNLQFYLSKYIEDIQLEGLGLFGGDLVLNDLEIKRHVLRESLEIPSSFDFSR 65
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BLAST of mRNA_E-fasciculatus_F_contig1332.2494.1 vs. uniprot
Match: A0A8K1CF18_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CF18_PYTOL)

HSP 1 Score: 59.7 bits (143), Expect = 2.830e-8
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:   97 DILLGPLKAVLMRVLQQQLSKYIHNIELEELGLMGGDVVLENLELRKDVLHDIGGISTDYDFSR 288
            DIL  PL+  + + LQ  LSKYI  I+LE LGL GGD+VL +LE+++ VL +   I + +DFSR
Sbjct:    3 DILSSPLRGYIAQNLQFYLSKYIEGIQLEGLGLFGGDLVLNDLEIKRHVLAESLEIPSSFDFSR 66
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BLAST of mRNA_E-fasciculatus_F_contig1332.2494.1 vs. uniprot
Match: A0A225X334_9STRA (Chorein N-terminal domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X334_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.320e-8
Identity = 31/62 (50.00%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:  103 LLGPLKAVLMRVLQQQLSKYIHNIELEELGLMGGDVVLENLELRKDVLHDIGGISTDYDFSR 288
            LL PL+  + + LQ  LSKYI +I+LE LGL GGD+VL +LE+++ VL +   I + +DFSR
Sbjct:    4 LLSPLRGYIAQNLQFYLSKYIEDIQLEGLGLFGGDLVLNDLEIKRHVLRESLEIPSSFDFSR 65
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1332.2494.1 vs. uniprot
Match: H3H1A7_PHYRM (Chorein N-terminal domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H1A7_PHYRM)

HSP 1 Score: 58.9 bits (141), Expect = 4.140e-8
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:  103 LLGPLKAVLMRVLQQQLSKYIHNIELEELGLMGGDVVLENLELRKDVLHDIGGISTDYDFSR 288
            LL PL+  + + LQ  L KYI +I+LE LGL GGDVVL +LE+++ VL +   I + +DFSR
Sbjct:    4 LLSPLRGYIAQSLQFYLGKYIEDIQLEGLGLFGGDVVLNDLEIKRHVLRESLEIPSSFDFSR 65
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1332.2494.1 vs. uniprot
Match: A0A6G0S2V8_9STRA (Chorein N-terminal domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6G0S2V8_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.050e-8
Identity = 31/62 (50.00%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:  103 LLGPLKAVLMRVLQQQLSKYIHNIELEELGLMGGDVVLENLELRKDVLHDIGGISTDYDFSR 288
            LL PL+  + + LQ  LSKYI +I+LE LGL GGD+VL +LE+++ VL +   I + +DFSR
Sbjct:    4 LLSPLRGYIAQNLQFYLSKYIEDIQLEGLGLFGGDLVLNDLEIKRHVLRESLEIPSSFDFSR 65
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1332.2494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKG1_9PHAE1.290e-34100.00VPS13_C domain-containing protein n=2 Tax=Ectocarp... [more]
A0A2P4XIP8_9STRA6.650e-950.00Vacuolar protein sorting-associated protein (Fragm... [more]
K3X2H6_GLOUD7.610e-950.00Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
F0VZU0_9STRA1.540e-850.00Uncharacterized protein AlNc14C3G419 n=1 Tax=Albug... [more]
A0A3F2RKP7_9STRA2.660e-848.39Chorein N-terminal domain-containing protein n=3 T... [more]
A0A0W8D6K5_PHYNI2.740e-850.00Major facilitator Superfamily n=1 Tax=Phytophthora... [more]
A0A8K1CF18_PYTOL2.830e-850.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A225X334_9STRA3.320e-850.00Chorein N-terminal domain-containing protein n=1 T... [more]
H3H1A7_PHYRM4.140e-850.00Chorein N-terminal domain-containing protein n=1 T... [more]
A0A6G0S2V8_9STRA5.050e-850.00Chorein N-terminal domain-containing protein n=4 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1332contigE-fasciculatus_F_contig1332:8544..9814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.8
Seed ortholog evalue2.8e-21
Seed eggNOG ortholog2880.D8LBD2
Preferred nameVPS13B
KEGG koko:K19526
GOsGO:0005575,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0007034,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0019898,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0044425,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0072665,GO:0072666
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons3
Model size291
Cds size291
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1332.2494.1prot_E-fasciculatus_F_contig1332.2494.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1332 8544..9814 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927834.4546666-CDS-E-fasciculatus_F_contig1332:8543..86041622927834.4546666-CDS-E-fasciculatus_F_contig1332:8543..8604Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1332 8544..8604 +
1695995715.2039042-CDS-E-fasciculatus_F_contig1332:8543..86041695995715.2039042-CDS-E-fasciculatus_F_contig1332:8543..8604Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1332 8544..8604 +
1622927834.471306-CDS-E-fasciculatus_F_contig1332:9125..92901622927834.471306-CDS-E-fasciculatus_F_contig1332:9125..9290Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1332 9126..9290 +
1695995715.2307029-CDS-E-fasciculatus_F_contig1332:9125..92901695995715.2307029-CDS-E-fasciculatus_F_contig1332:9125..9290Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1332 9126..9290 +
1622927834.4859781-CDS-E-fasciculatus_F_contig1332:9749..98141622927834.4859781-CDS-E-fasciculatus_F_contig1332:9749..9814Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1332 9750..9814 +
1695995715.2446654-CDS-E-fasciculatus_F_contig1332:9749..98141695995715.2446654-CDS-E-fasciculatus_F_contig1332:9749..9814Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1332 9750..9814 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1332.2494.1

>prot_E-fasciculatus_F_contig1332.2494.1 ID=prot_E-fasciculatus_F_contig1332.2494.1|Name=mRNA_E-fasciculatus_F_contig1332.2494.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=97bp
RRAGAQLCHCTSSAPCCAVQGRARPLIMRAFSDILLGPLKAVLMRVLQQQ
LSKYIHNIELEELGLMGGDVVLENLELRKDVLHDIGGISTDYDFSR*
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mRNA from alignment at E-fasciculatus_F_contig1332:8544..9814+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1332.2494.1 ID=mRNA_E-fasciculatus_F_contig1332.2494.1|Name=mRNA_E-fasciculatus_F_contig1332.2494.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1271bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1332:8544..9814+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCAGAGCTGGAGCTCAGCTGTGTCACTGCACCAGTTCAGCTCCGTGCTG
TGCGGTTCAAGGTGAGTAGCCGCTAGTTTAGGGCCTCGTCGTGGCTCACT
GCAGTTGCCATAAGCCGAAGGGTGGATCCCAAACGCTGTGAAAGATGACC
AAGGCAAAGGACGGACGGAGATGCTGCTCTGTATGTACTGCTGTAGTCCC
ATGCTCCAACTCCGCGGCACTTGTACTTCCGATTGTTGCACCTGCAGACA
TGGTCAAGTAGGCCGGAAAGGCACACAGCGCTAAGAGATGTGCATGTAGA
ATGGCTACTCCGACGCGTCGTCTTTCAACAAATTGCACCAATCTACGGCA
GCGAGTGCTGGACCCCGAGACGTTTTGTGGTGCAAGTGCTCGTTGTAGTC
TTTTTAGTCTTTCGTAGGATGTGTGTGTGTAGCAGGTGAGTGCGGAGAGA
TGTTTGGAACAATGCACCTACTGCTGTGTAAACACATTCTCCGTTTTGTT
CCAGCATCTACATGTGTTGCATAGAGTATTCATGCAACGTGAACACGGGC
CGGGCGCTGTGCTTGTCTACTGTTCCCAGCAGGGAGAGCTCGTCCACTCA
TCATGAGGGCCTTCTCGGATATACTGCTGGGACCCCTCAAGGCGGTGCTA
ATGCGAGTTCTTCAGCAGCAGCTGTCCAAGTACATCCACAACATCGAGCT
GGAGGAGCTAGGGCTCATGGGAGGCGACGTTGTCTTGGAAAACCTAGGTG
CGGGGACGTGTATAACGCACCGAGAGAGCGCACCAGATTCATCTTTTCGG
CTCCCAGCGCACACGCTGCTCGCCTCGTCGTGGCTATTGCGCGACACTTC
TCCGGTGGTGCTGCTACTTCTCTACACACCCAAGACCGTTTTTTCGTCGC
GTGTGGTCGAGAACAGACATATAGTCTATCGGCAATCGATCCTCAGTCGG
AACGAATATTTCTCTGAATTTGTTCAGGGTGTGCTTCATTAGTGCGTGGA
AAATCACCTTTTGCCCTTGCAGCGGACGACGACATGCGCGCACACCGCCG
TCGATTCCTCCGGAGGTACTCCCCATAGGTTCCAACCATTATCTTCCCTC
CCCTGCCTGTTGGTCAATGGTCTAACAACTCAGGCATGCGAAACATGAGT
ACTCACCCCCCCCCAACCCGTTGCACCGCGTGTCCTCTCTGTGACGGCCT
ATGTAGAGCTCCGCAAAGACGTTCTCCACGATATCGGAGGCATCAGCACC
GACTACGATTTCTCAAGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1332:8544..9814+

>mRNA_E-fasciculatus_F_contig1332.2494.1 ID=mRNA_E-fasciculatus_F_contig1332.2494.1|Name=mRNA_E-fasciculatus_F_contig1332.2494.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=582bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1332:8544..9814+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCAGAGCTGGAGCTCAGCTGTGTCACTGCACCAGTTCAGCTCCGTGCTG
TGCGGTTCAAGCGCAGAGCTGGAGCTCAGCTGTGTCACTGCACCAGTTCA
GCTCCGTGCTGTGCGGTTCAAGGGAGAGCTCGTCCACTCATCATGAGGGC
CTTCTCGGATATACTGCTGGGACCCCTCAAGGCGGTGCTAATGCGAGTTC
TTCAGCAGCAGCTGTCCAAGTACATCCACAACATCGAGCTGGAGGAGCTA
GGGCTCATGGGAGGCGACGTTGTCTTGGAAAACCTAGGGAGAGCTCGTCC
ACTCATCATGAGGGCCTTCTCGGATATACTGCTGGGACCCCTCAAGGCGG
TGCTAATGCGAGTTCTTCAGCAGCAGCTGTCCAAGTACATCCACAACATC
GAGCTGGAGGAGCTAGGGCTCATGGGAGGCGACGTTGTCTTGGAAAACCT
AGAGCTCCGCAAAGACGTTCTCCACGATATCGGAGGCATCAGCACCGACT
ACGATTTCTCAAGGTGAAGCTCCGCAAAGACGTTCTCCACGATATCGGAG
GCATCAGCACCGACTACGATTTCTCAAGGTGA
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