mRNA_E-fasciculatus_F_contig13315.2488.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13315.2488.1
Unique NamemRNA_E-fasciculatus_F_contig13315.2488.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13315.2488.1 vs. uniprot
Match: D8LQE7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQE7_ECTSI)

HSP 1 Score: 306 bits (785), Expect = 1.930e-104
Identity = 153/161 (95.03%), Postives = 157/161 (97.52%), Query Frame = 1 
Query:    1 MASNRSERLTVHQKKKTSRALVRARRLRNASMAKVLGEEEWSGYEATMRQGLRELDDTTEVKRRGTYASKPLVSATPQADENEDGKLLSEQDAWAERMEGVWNEILQADAKSTRPRITLPGFPIHVVMVKIARDYGHHKIFWELSDVDTRPPNSVLRQLYE 483
            MASNRSERLTVHQKKK SRALVRARRLRNASMA VLGEEEWSGYEATMRQGLRELDDTTEVKRRGTYASKPLVSA PQAD+N+DG+LLSE+DAWAERMEGVWNEILQADAK TRPRITLPGFPIHVVMVKIARDYGHHKIFWELSDVDTRPPNSVLRQLYE
Sbjct:    1 MASNRSERLTVHQKKKMSRALVRARRLRNASMATVLGEEEWSGYEATMRQGLRELDDTTEVKRRGTYASKPLVSAAPQADKNDDGRLLSERDAWAERMEGVWNEILQADAKGTRPRITLPGFPIHVVMVKIARDYGHHKIFWELSDVDTRPPNSVLRQLYE 161
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13315.2488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQE7_ECTSI1.930e-10495.03Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13315contigE-fasciculatus_F_contig13315:1013..3529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosome-binding factor A
Ec32 orthologEc-10_005360.1
Exons3
Model size483
Cds size483
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13315.2488.1prot_E-fasciculatus_F_contig13315.2488.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13315 1013..3529 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927833.8326705-CDS-E-fasciculatus_F_contig13315:1012..12281622927833.8326705-CDS-E-fasciculatus_F_contig13315:1012..1228Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13315 1013..1228 +
1695995714.8761008-CDS-E-fasciculatus_F_contig13315:1012..12281695995714.8761008-CDS-E-fasciculatus_F_contig13315:1012..1228Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13315 1013..1228 +
1622927833.8526235-CDS-E-fasciculatus_F_contig13315:2981..31401622927833.8526235-CDS-E-fasciculatus_F_contig13315:2981..3140Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13315 2982..3140 +
1695995714.8880174-CDS-E-fasciculatus_F_contig13315:2981..31401695995714.8880174-CDS-E-fasciculatus_F_contig13315:2981..3140Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13315 2982..3140 +
1622927833.8684542-CDS-E-fasciculatus_F_contig13315:3421..35291622927833.8684542-CDS-E-fasciculatus_F_contig13315:3421..3529Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13315 3422..3529 +
1695995714.8996441-CDS-E-fasciculatus_F_contig13315:3421..35291695995714.8996441-CDS-E-fasciculatus_F_contig13315:3421..3529Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13315 3422..3529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13315.2488.1

>prot_E-fasciculatus_F_contig13315.2488.1 ID=prot_E-fasciculatus_F_contig13315.2488.1|Name=mRNA_E-fasciculatus_F_contig13315.2488.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=161bp
MASNRSERLTVHQKKKTSRALVRARRLRNASMAKVLGEEEWSGYEATMRQ
GLRELDDTTEVKRRGTYASKPLVSATPQADENEDGKLLSEQDAWAERMEG
VWNEILQADAKSTRPRITLPGFPIHVVMVKIARDYGHHKIFWELSDVDTR
PPNSVLRQLYE
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mRNA from alignment at E-fasciculatus_F_contig13315:1013..3529+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13315.2488.1 ID=mRNA_E-fasciculatus_F_contig13315.2488.1|Name=mRNA_E-fasciculatus_F_contig13315.2488.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2517bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13315:1013..3529+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGAGCAACCGCAGCGAACGCCTGACCGTGCACCAGAAGAAAAAAAC
GTCCAGAGCGCTGGTGCGGGCGCGCCGGCTGCGAAACGCCTCCATGGCGA
AGGTGCTCGGCGAGGAGGAGTGGAGCGGGTACGAGGCGACGATGCGGCAG
GGACTCAGAGAGCTAGATGACACCACCGAGGTTAAGCGGCGCGGGACGTA
CGCGAGCAAGCCGCTGGTGAGGCCCCGTGTATGTATTGTGGCATCTGCGG
ATGTAAACTGCCTACTCTCGTTTTACTTTACTTTCCTTCGGGTGGATGTA
GCACGATGATTGGTGCAAAGCTACTGGGTGCCTAGGTCTCTGCTTACAAA
ACGCGGGCAAGGCAAAGTGTCCACCACCATGTGCCTCACGCATGGCCTTC
GTGTGATGGATTTTCAAGCCACAATGGACGAATTTTTTTCCATGTGTCCA
GGTGGAACACAAAGTGGACACGGGAGTTTAGTATACGCATCCCCATTCGC
GTAAAACCGACAATGTTGCTAAATAGTGGGAGGTGGAGTAGTTTTTTGGG
TTGACAAAAAGTACCTGCAGTAGGCTCGTGCGTCTGTTCATTGGCTTGTT
TACCAAACAGTGTGCTTTACAGAAGAAGAGGGGGCGGTCCATCATCATCA
GCTAGAGATGGGGGGGGTGGTATCCATCATCAGAAAACCGAAAAAAAAAG
CTCAATTGCTGCTGCTGCTGCTGCTGCCAGCTGGTGGTGGTGTGGCTAAC
ACAGCACAACAGCAGATGAGGCGACAAACCCTCTCGCACATGAAGTGTAG
AGAGGTGCACACCACACCAGCAGTAGTAGGTAGTACATGCATCGTCTAGG
AACGAGCGCTCCCCCACCCAGCCAGCTGTTGCTGCTGCTGTTGTGTTGTG
ACTGCTGTGCATCCTGGTGTGAACTCTCTCTCATGTCGTTCGTTTTTGTG
TAACCCAGTATAGACCCAACCGAACGTTGATCTCTCCTCCTCTCGCTTCC
TCCGCCTAAAGCTAACAGCAGCAGAGGTATAGGGCACACCCTGCTCCGGT
CTCGCTCTCGCTGTGTGGTGTGCGTTTTTACCCTCCTCCCCCCTTCCTTG
TTCATTCTGGGTTGCCTCCGCCTGGTTGGTGTGGGTGCACACTTTCAAAG
CCAAAGAAACCGCTCGCTGCTGCCTGGCAGCAAAAATACAAGAAGCGATG
ACTCGAAGACCCACCCAACCAAACGTGCATCTCTCCTCTCGCTTCCTCCG
CCGATAGCGAACAGCAGCAGGAGTATAGGGCACACCCTGCTTCCGTCTCG
CTCTCGCTGTGTTGTGCGTGTTTCCCTCCTCCTCCCTGTGTGCAGGGCGG
TTTCTTGCGTGTAGTTCGTTGTTCCAAAAAACAAAAAAGACTCCTCCCGG
CCCACAACTCGGGGATGCGTCAACATGTGACATAAGTATTGGCACACAAA
CGGTGTGCTACCTCGAGACACCGACCACGGATTGCAAAGGTAGCGGTTGG
GACAGCTCGGGCAAAATGTTACTTGTTGTGCGCAAGTCTCACTTTGAAAT
TGGGTGCCTAGATGGTGAAACGGGCTCGAGTCTGCTGGCTTATTTATGGT
CACACAGACAGACAGGACGGACGTCTATCGTCTGTTTTCACCCCCCACTG
CATGGAAACTGTTGTTTTTTGCGTGTGCGCGTACATGTGCAACGCGATCC
CTCTAAACAGGATTTTGCGAAACAAGAAGCGCCCCTAACCGGGCCACTCA
ACTTGCATAACCCCCCCCCCGACATCTGAGGGTCCCCGCGATTGGGAGAA
CCAGGATAGTGTATAGGCGTGTAGGGGCAGGTATACCGCAGTTTCCTGCC
GTGACCACCGCAAGTCGTGCCCCCGGCCTTATTGTGGTCCGCTTTTTATG
GAGGCCGGCGCTTAAATCGCACGTACGTCCCAACCGACTGCCTCCTATGC
TCCGGCCCTTCCCCGAAAGGTGTCGGCTACCCCGCAGGCCGATGAGAATG
AAGATGGCAAGCTATTGTCGGAGCAGGACGCGTGGGCGGAGAGGATGGAA
GGCGTCTGGAACGAAATCTTGCAAGCCGATGCGAAAAGCACCAGGCCACG
CATAACGCTCCCCGGCTTTCCCATACACGTGAGACAAAAAAATAATGAGC
AGGAAGCTACAGGAATCACTCCGTACTTGGAATATATATTTTGCAAAGGG
TTGGGCCGCTGTTTTGCGAATGTGTTTGCACCATACCTTAGAGAAGACCC
ATTATTCAGTGCCAGGATGCTGACTCCGATGCCTATGGAAAGGAGCGACA
AACTCTGCTGTCCTCGAGCATTCGTCGTTGGTCGCACGTGCTCGCCTACC
CTCCTTGCACCCGAAACGATGCCGTTGCTGATTGGGTGCCGCTGTTGTTG
ATGAAATAGGTGGTGATGGTCAAAATCGCCAGGGATTACGGTCACCACAA
GATTTTTTGGGAGCTGTCAGACGTGGATACGCGTCCGCCGAACTCTGTCT
TACGCCAGCTATACGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13315:1013..3529+

>mRNA_E-fasciculatus_F_contig13315.2488.1 ID=mRNA_E-fasciculatus_F_contig13315.2488.1|Name=mRNA_E-fasciculatus_F_contig13315.2488.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=966bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13315:1013..3529+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGAGCAACCGCAGCGAACGCCTGACCGTGCACCAGAAGAAAAAAAC
GTCCAGAGCGCTGGTGCGGGCGCGCCGGCTGCGAAACGCCTCCATGGCGA
AGGTGCTCGGCGAGGAGGAGTGGAGCGGGTACGAGGCGACGATGCGGCAG
GGACTCAGAGAGCTAGATGACACCACCGAGGTTAAGCGGCGCGGGACGTA
CGCGAGCAAGCCGCTGATGGCGAGCAACCGCAGCGAACGCCTGACCGTGC
ACCAGAAGAAAAAAACGTCCAGAGCGCTGGTGCGGGCGCGCCGGCTGCGA
AACGCCTCCATGGCGAAGGTGCTCGGCGAGGAGGAGTGGAGCGGGTACGA
GGCGACGATGCGGCAGGGACTCAGAGAGCTAGATGACACCACCGAGGTTA
AGCGGCGCGGGACGTACGCGAGCAAGCCGCTGGTGTCGGCTACCCCGCAG
GCCGATGAGAATGAAGATGGCAAGCTATTGTCGGAGCAGGACGCGTGGGC
GGAGAGGATGGAAGGCGTCTGGAACGAAATCTTGCAAGCCGATGCGAAAA
GCACCAGGCCACGCATAACGCTCCCCGGCTTTCCCATACACGTGTCGGCT
ACCCCGCAGGCCGATGAGAATGAAGATGGCAAGCTATTGTCGGAGCAGGA
CGCGTGGGCGGAGAGGATGGAAGGCGTCTGGAACGAAATCTTGCAAGCCG
ATGCGAAAAGCACCAGGCCACGCATAACGCTCCCCGGCTTTCCCATACAC
GTGGTGATGGTCAAAATCGCCAGGGATTACGGTCACCACAAGATTTTTTG
GGAGCTGTCAGACGTGGATACGCGTCCGCCGAACTCTGTCTTACGCCAGC
TATACGAGGTGGTGATGGTCAAAATCGCCAGGGATTACGGTCACCACAAG
ATTTTTTGGGAGCTGTCAGACGTGGATACGCGTCCGCCGAACTCTGTCTT
ACGCCAGCTATACGAG
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