mRNA_E-fasciculatus_F_contig13313.2487.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13313.2487.1
Unique NamemRNA_E-fasciculatus_F_contig13313.2487.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13313.2487.1 vs. uniprot
Match: A0A6H5KJ03_9PHAE (Aminotran_1_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJ03_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 1.140e-48
Identity = 82/86 (95.35%), Postives = 85/86 (98.84%), Query Frame = 1
Query:    1 AFMEEKLPELRMDPMEATYLAWVDVTKLGWKSPALEFERAGVGLTDGKGFLGEGYVRINFACPREMLMEGLRRMERAVIKEYREKQ 258
            AFMEEKLPELR+DPMEATYLAWVDVTKLGWKSPA+EFERAGVGLTDGKGFLGEGYVRINFACPREMLMEGLRRME+AVI EYREKQ
Sbjct:  376 AFMEEKLPELRLDPMEATYLAWVDVTKLGWKSPAMEFERAGVGLTDGKGFLGEGYVRINFACPREMLMEGLRRMEQAVIIEYREKQ 461          
BLAST of mRNA_E-fasciculatus_F_contig13313.2487.1 vs. uniprot
Match: A0A7C1UAN5_9BACT (Putative C-S lyase n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7C1UAN5_9BACT)

HSP 1 Score: 98.2 bits (243), Expect = 2.170e-22
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    4 FMEEKLPELRMDPMEATYLAWVDVTKLGWKSPALEFERAGVGLTDGKGFLGEGYVRINFACPREMLMEGLRRMERAV 234
            F+ +K+P L MD +EATYLAW+D   LG  +P   FE+AGVGL+DG  F GEGYVR+NF CPRE L++ L RM+RAV
Sbjct:  301 FINDKIPRLSMDDVEATYLAWIDAGSLGVPAPDRFFEQAGVGLSDGGNFQGEGYVRLNFGCPRETLLKALDRMKRAV 377          
BLAST of mRNA_E-fasciculatus_F_contig13313.2487.1 vs. uniprot
Match: A0A532UPF5_9BACT (Aspartate aminotransferase n=1 Tax=Planctomycetes bacterium B3_Pla TaxID=2012488 RepID=A0A532UPF5_9BACT)

HSP 1 Score: 92.0 bits (227), Expect = 4.110e-20
Identity = 43/77 (55.84%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    4 FMEEKLPELRMDPMEATYLAWVDVTKLGWKSPALEFERAGVGLTDGKGFLGEGYVRINFACPREMLMEGLRRMERAV 234
            F+ E++P L MD ++ATYLAW+D   L    PAL FERAGVGL+DG+ F  EGYVR++F CP++ L++ L RM+RAV
Sbjct:  301 FVNEEIPRLSMDDVQATYLAWIDAGGLEVPDPALFFERAGVGLSDGRHFQAEGYVRLSFGCPQKNLLDALDRMKRAV 377          
BLAST of mRNA_E-fasciculatus_F_contig13313.2487.1 vs. uniprot
Match: A0A424R3A4_9BACT (Putative C-S lyase n=2 Tax=Puniceicoccaceae TaxID=415002 RepID=A0A424R3A4_9BACT)

HSP 1 Score: 90.1 bits (222), Expect = 2.110e-19
Identity = 41/79 (51.90%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    4 FMEEKLPELRMDPMEATYLAWVDVTKLGWKSPALEFERAGVGLTDGKGFLGEGYVRINFACPREMLMEGLRRMERAVIK 240
            F++ +LP ++  PM+ATYLAW+DV+ LG   PA  FE  GVGL+DG  F G G++R+NF CPR+ L+E L ++ RAV K
Sbjct:  306 FVQRELPGIQFXPMQATYLAWLDVSALGLARPAAHFEAHGVGLSDGTPFHGRGHLRLNFGCPRDRLLEALEKIARAVEK 384          
BLAST of mRNA_E-fasciculatus_F_contig13313.2487.1 vs. uniprot
Match: A0A1U9NLZ3_9BACT (Cystathionine beta-lyase PatB n=1 Tax=Anaerohalosphaera lusitana TaxID=1936003 RepID=A0A1U9NLZ3_9BACT)

HSP 1 Score: 89.7 bits (221), Expect = 2.820e-19
Identity = 43/77 (55.84%), Postives = 53/77 (68.83%), Query Frame = 1
Query:    4 FMEEKLPELRMDPMEATYLAWVDVTKLGWKSPALEFERAGVGLTDGKGFLGEGYVRINFACPREMLMEGLRRMERAV 234
            F+ E++PEL  + +EATYLAW+D   LG   PA  F   GVGL DGK F  EG+VR+NF CPR  LM+GL RM+ AV
Sbjct:  301 FVNERIPELSAENIEATYLAWIDARSLGPDDPARFFAEHGVGLLDGKEFGAEGFVRLNFGCPRRTLMQGLTRMQTAV 377          
BLAST of mRNA_E-fasciculatus_F_contig13313.2487.1 vs. uniprot
Match: A0A0S8GWH4_9BACT (Aspartate aminotransferase n=1 Tax=Phycisphaerae bacterium SM23_30 TaxID=1703411 RepID=A0A0S8GWH4_9BACT)

HSP 1 Score: 89.4 bits (220), Expect = 4.200e-19
Identity = 41/79 (51.90%), Postives = 59/79 (74.68%), Query Frame = 1
Query:    4 FMEEKLPELRMDPMEATYLAWVDVTKLGWKSPALEFERAGVGLTDGKGFLGEGYVRINFACPREMLMEGLRRMERAVIK 240
            F++ ++P L MD +EATYLAWVDV+ L    P   FE AGVGL+DG+ + G GYVR+NF CP+++L++ L +M++AV K
Sbjct:  301 FIKNEIPLLSMDHIEATYLAWVDVSLLNEADPIRFFENAGVGLSDGRDYEGPGYVRLNFGCPQKVLLQALEKMKQAVAK 379          
BLAST of mRNA_E-fasciculatus_F_contig13313.2487.1 vs. uniprot
Match: D5EJR4_CORAD (Aminotransferase class I and II n=1 Tax=Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865 / 04OKA010-24) TaxID=583355 RepID=D5EJR4_CORAD)

HSP 1 Score: 89.0 bits (219), Expect = 5.610e-19
Identity = 43/77 (55.84%), Postives = 55/77 (71.43%), Query Frame = 1
Query:    4 FMEEKLPELRMDPMEATYLAWVDVTKLGWKSPALEFERAGVGLTDGKGFLGEGYVRINFACPREMLMEGLRRMERAV 234
            F+ E+LPE+   PMEATYLAW DVTKL   +P   FE  GVGL+DG  F G  +VR+NF CP+  L+EGL ++ERA+
Sbjct:  306 FIREQLPEITFRPMEATYLAWFDVTKLELDNPIKFFEDNGVGLSDGVPFDGNQHVRLNFGCPQSRLIEGLEKIERAI 382          
BLAST of mRNA_E-fasciculatus_F_contig13313.2487.1 vs. uniprot
Match: A0A1Z9G9Z1_9BACT (Aspartate aminotransferase n=1 Tax=Puniceicoccaceae bacterium TMED149 TaxID=1986788 RepID=A0A1Z9G9Z1_9BACT)

HSP 1 Score: 88.2 bits (217), Expect = 1.080e-18
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    1 AFMEEKLPELRMDPMEATYLAWVDVTKLGWKSPALEFERAGVGLTDGKGFLGEGYVRINFACPREMLMEGLRRMERAVIKE 243
            +F+EE +P++   PM+ATYLAW++ ++L  KSP   FE+ G+GL+DG  F    YVR+NF CP+  L+EGL RM  A+ KE
Sbjct:  301 SFIEESMPQIVFKPMQATYLAWLNTSQLNIKSPTQFFEKHGIGLSDGTPFGDSNYVRLNFGCPKNRLIEGLERMHEALKKE 381          
BLAST of mRNA_E-fasciculatus_F_contig13313.2487.1 vs. uniprot
Match: A0A835ZGK3_9STRA (Aminotransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGK3_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.240e-18
Identity = 43/77 (55.84%), Postives = 51/77 (66.23%), Query Frame = 1
Query:    4 FMEEKLPELRMDPMEATYLAWVDVTKLGWKSPALEFERAGVGLTDGKGFLGEGYVRINFACPREMLMEGLRRMERAV 234
            F+  + PE+   PM ATYLAW+DV  L W+ P LEFER GVGLTDG+ F   GYVR+NF  PR  L EGL R+   V
Sbjct:  394 FLCARAPEVIAHPMAATYLAWLDVRALAWRDPVLEFERGGVGLTDGRFFGAPGYVRLNFGLPRWRLEEGLERLAAVV 470          
BLAST of mRNA_E-fasciculatus_F_contig13313.2487.1 vs. uniprot
Match: A0A645HGH6_9ZZZZ (Uncharacterized protein n=1 Tax=bioreactor metagenome TaxID=1076179 RepID=A0A645HGH6_9ZZZZ)

HSP 1 Score: 81.6 bits (200), Expect = 1.380e-18
Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 1
Query:   19 LPELRMDPMEATYLAWVDVTKLGWKSPALEFERAGVGLTDGKGFLGEGYVRINFACPREMLMEGLRRMERA 231
            LP +RM P+EATYLAW+D+  L  + PA  FE  G+GL+DG  F   G++R+NF CPR  L E LRR ERA
Sbjct:    4 LPGIRMAPVEATYLAWLDIRDLKLEHPAAHFEAHGLGLSDGTAFGAPGWLRLNFGCPRTTLDEALRRFERA 74          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13313.2487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJ03_9PHAE1.140e-4895.35Aminotran_1_2 domain-containing protein n=2 Tax=Ec... [more]
A0A7C1UAN5_9BACT2.170e-2259.74Putative C-S lyase n=1 Tax=Phycisphaerales bacteri... [more]
A0A532UPF5_9BACT4.110e-2055.84Aspartate aminotransferase n=1 Tax=Planctomycetes ... [more]
A0A424R3A4_9BACT2.110e-1951.90Putative C-S lyase n=2 Tax=Puniceicoccaceae TaxID=... [more]
A0A1U9NLZ3_9BACT2.820e-1955.84Cystathionine beta-lyase PatB n=1 Tax=Anaerohalosp... [more]
A0A0S8GWH4_9BACT4.200e-1951.90Aspartate aminotransferase n=1 Tax=Phycisphaerae b... [more]
D5EJR4_CORAD5.610e-1955.84Aminotransferase class I and II n=1 Tax=Coraliomar... [more]
A0A1Z9G9Z1_9BACT1.080e-1849.38Aspartate aminotransferase n=1 Tax=Puniceicoccacea... [more]
A0A835ZGK3_9STRA1.240e-1855.84Aminotransferase n=1 Tax=Tribonema minus TaxID=303... [more]
A0A645HGH6_9ZZZZ1.380e-1854.93Uncharacterized protein n=1 Tax=bioreactor metagen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13313contigE-fasciculatus_F_contig13313:1..577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.9
Seed ortholog evalue6.3e-41
Seed eggNOG ortholog2880.D7FPI8
EggNOG free text desc.transferase activity, transferring nitrogenous groups
EggNOG OGsCOG0436@1,KOG0257@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAminotransferase
Ec32 orthologEc-12_000740.1
Exons2
Model size264
Cds size258
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13313.2487.1prot_E-fasciculatus_F_contig13313.2487.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13313 7..577 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927833.719887-UTR-E-fasciculatus_F_contig13313:0..61622927833.719887-UTR-E-fasciculatus_F_contig13313:0..6Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13313 1..6 +
1695995714.8421268-UTR-E-fasciculatus_F_contig13313:0..61695995714.8421268-UTR-E-fasciculatus_F_contig13313:0..6Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13313 1..6 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927833.7376757-CDS-E-fasciculatus_F_contig13313:6..861622927833.7376757-CDS-E-fasciculatus_F_contig13313:6..86Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13313 7..86 +
1695995714.8560483-CDS-E-fasciculatus_F_contig13313:6..861695995714.8560483-CDS-E-fasciculatus_F_contig13313:6..86Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13313 7..86 +
1622927833.7624252-CDS-E-fasciculatus_F_contig13313:399..5771622927833.7624252-CDS-E-fasciculatus_F_contig13313:399..577Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13313 400..577 +
1695995714.8660102-CDS-E-fasciculatus_F_contig13313:399..5771695995714.8660102-CDS-E-fasciculatus_F_contig13313:399..577Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13313 400..577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13313.2487.1

>prot_E-fasciculatus_F_contig13313.2487.1 ID=prot_E-fasciculatus_F_contig13313.2487.1|Name=mRNA_E-fasciculatus_F_contig13313.2487.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=86bp
MEEKLPELRMDPMEATYLAWVDVTKLGWKSPALEFERAGVGLTDGKGFLG
EGYVRINFACPREMLMEGLRRMERAVIKEYREKQGD
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mRNA from alignment at E-fasciculatus_F_contig13313:1..577+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13313.2487.1 ID=mRNA_E-fasciculatus_F_contig13313.2487.1|Name=mRNA_E-fasciculatus_F_contig13313.2487.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=577bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13313:1..577+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGTTCATGGAGGAGAAGCTGCCGGAGCTCCGCATGGACCCGATGGAAGC GACGTACCTTGCTTGGGTGGACGTGACGAAGCTGGGGTGAGCGGTACGGG CTACTCCCCGCACGTGGTTTCGTTTACGTCGTGCGTGGGCCTTTGGTTGT GATGGCCTGCAGGTTTTGTTTCTTGCGTGGGCAATCTCTGGTCGCGTGAT AGCCTCGTGCAGCGGTTTCCCCGGTTGTTGGCTCATCATCAAACATCGGT GTTGGCAGGCCCTGAAGAATCCCACGCAAGGAATGAAGATCTAATGCATA CCCATCCACAGACTCACCTCCCGCTTGCGACATCATCATTCATTTCGCCT TTGGTTTTCTCCTTGTCTTTCCCGTGTCCCGTGTTTGGTGTTTGTTCAGC TGGAAAAGCCCGGCATTGGAGTTCGAGCGAGCGGGCGTCGGGCTCACGGA CGGGAAGGGTTTCCTCGGGGAGGGGTACGTGCGGATCAACTTTGCGTGTC CGCGAGAGATGCTGATGGAAGGCCTCCGACGAATGGAGCGAGCAGTCATC AAAGAGTACCGTGAGAAGCAGGGTGAT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13313:1..577+

>mRNA_E-fasciculatus_F_contig13313.2487.1 ID=mRNA_E-fasciculatus_F_contig13313.2487.1|Name=mRNA_E-fasciculatus_F_contig13313.2487.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=516bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13313:1..577+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGGAGAAGCTGCCGGAGCTCCGCATGGACCCGATGGAAGCGACGTA
CCTTGCTTGGGTGGACGTGACGAAGCTGGGATGGAGGAGAAGCTGCCGGA
GCTCCGCATGGACCCGATGGAAGCGACGTACCTTGCTTGGGTGGACGTGA
CGAAGCTGGGCTGGAAAAGCCCGGCATTGGAGTTCGAGCGAGCGGGCGTC
GGGCTCACGGACGGGAAGGGTTTCCTCGGGGAGGGGTACGTGCGGATCAA
CTTTGCGTGTCCGCGAGAGATGCTGATGGAAGGCCTCCGACGAATGGAGC
GAGCAGTCATCAAAGAGTACCGTGAGAAGCAGGGTGATCTGGAAAAGCCC
GGCATTGGAGTTCGAGCGAGCGGGCGTCGGGCTCACGGACGGGAAGGGTT
TCCTCGGGGAGGGGTACGTGCGGATCAACTTTGCGTGTCCGCGAGAGATG
CTGATGGAAGGCCTCCGACGAATGGAGCGAGCAGTCATCAAAGAGTACCG
TGAGAAGCAGGGTGAT
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