mRNA_E-fasciculatus_F_contig13260.2457.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13260.2457.1
Unique NamemRNA_E-fasciculatus_F_contig13260.2457.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13260.2457.1 vs. uniprot
Match: D7FLE6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLE6_ECTSI)

HSP 1 Score: 265 bits (677), Expect = 6.820e-83
Identity = 136/140 (97.14%), Postives = 138/140 (98.57%), Query Frame = 1
Query:   91 MSARSGHSGPTTVARGMPGATGDGNATKAMDNLRAEIKLLHWHKLANEAALKAALLKTKKIKARGGGTSRPVPAMTTLSMPTDERAAWMQQVIEEEQSKPLQVSKDFMCKYEKQEEETEGRLDTEVAAHIRSLRNLRHQV 510
            MSARSGHSGPT VARGMP ATGDGNATKAMDNLRAEIKLLHWHKLAN+AALKAALLKTKKIKARGGGTSRPVPAMTTLSMPTDERAAWMQQVIEEEQSKPLQVSKDFMCKYEKQEEETEGRLDTEVAAHIRSLRNLRHQ+
Sbjct:    1 MSARSGHSGPTNVARGMPSATGDGNATKAMDNLRAEIKLLHWHKLANQAALKAALLKTKKIKARGGGTSRPVPAMTTLSMPTDERAAWMQQVIEEEQSKPLQVSKDFMCKYEKQEEETEGRLDTEVAAHIRSLRNLRHQI 140          
BLAST of mRNA_E-fasciculatus_F_contig13260.2457.1 vs. uniprot
Match: A0A836CKD1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKD1_9STRA)

HSP 1 Score: 118 bits (296), Expect = 2.800e-28
Identity = 61/106 (57.55%), Postives = 76/106 (71.70%), Query Frame = 1
Query:  199 IKLLHWHKLANEAALKAALLKTKKIKARGGGTS--RPVPAMTTLSMPTDERAAWMQQVIEEEQSKPLQVSKDFMCKYEKQEEETEGRLDTEVAAHIRSLRNLRHQV 510
            +KLLHWHKLANEAALKAA+LKT+K K  GG     +P P  +   MP +E+AAW+QQ+IEEE+ KPLQV KDF+  YEK+E+E   RLD E+   I SLR LR  +
Sbjct:    1 MKLLHWHKLANEAALKAAILKTRKAKQGGGAGEVLKPAPPASANHMPMEEKAAWVQQIIEEEKGKPLQVGKDFVMDYEKREKEQSARLDREIERQIASLRKLREHI 106          
BLAST of mRNA_E-fasciculatus_F_contig13260.2457.1 vs. uniprot
Match: A0A7S2FVP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FVP2_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.870e-27
Identity = 78/168 (46.43%), Postives = 95/168 (56.55%), Query Frame = 1
Query:   10 WVSEFEAFQWSKGQRNNEGTPHAGGAPMSARSGHSGPTTVARGMPGATGDGNATKAMDNLRAEIKLLHWHKLANEAALKAALLKTKKIKARGGGTSRPVPAMTTLSMPTDERAAWMQQVIEEEQSKPLQVSKDFMCKYEKQEEETEGRLDTEVAAHIRSLRNLRHQVR 513
            W S+F+AFQ S            GG P +       P TV                M+ L AE+KLL+WHKLANEAALKAAL++TKK+  R    S P  ++        ++AAWMQQVIEEEQ KPLQVSKDF+ KYE  E + E RLD EV  HI  LR LR +V+
Sbjct:   19 WASDFDAFQPS------------GGLPGA-------PPTVDTLQKSQVMARQPESTMEELEAEMKLLNWHKLANEAALKAALIRTKKL--RKMDKSPPSKSL-------QDKAAWMQQVIEEEQRKPLQVSKDFIQKYETDERKEEERLDAEVQRHIDVLRKLRGKVK 158          
BLAST of mRNA_E-fasciculatus_F_contig13260.2457.1 vs. uniprot
Match: A0A7S4D705_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D705_HETAK)

HSP 1 Score: 107 bits (268), Expect = 2.270e-26
Identity = 58/126 (46.03%), Postives = 84/126 (66.67%), Query Frame = 1
Query:  133 RGMPGATGDGNATKAMDNLRAEIKLLHWHKLANEAALKAALLKTKKIKARGGGTSRPVPAMTTLSMPTDERAAWMQQVIEEEQSKPLQVSKDFMCKYEKQEEETEGRLDTEVAAHIRSLRNLRHQV 510
            RG   +      + AM++L+AE+KLL+WHKLANEAALKAAL++TK ++   GG    +   + L    +ERA WMQQVI+EE +KPLQV K+++ ++E++E +   RL  EV+ HI +L  LR  V
Sbjct:   32 RGSVRSPSPNQRSSAMEDLQAEMKLLNWHKLANEAALKAALIRTKNLRKARGGVEGTLKGRSNL----EERAGWMQQVIDEEHTKPLQVDKEWVAQHERREAQQAARLQDEVSLHINTLAALRQSV 153          
BLAST of mRNA_E-fasciculatus_F_contig13260.2457.1 vs. uniprot
Match: A0A8J2SWN2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SWN2_9STRA)

HSP 1 Score: 112 bits (281), Expect = 2.340e-26
Identity = 62/110 (56.36%), Postives = 79/110 (71.82%), Query Frame = 1
Query:  181 DNLRAEIKLLHWHKLANEAALKAALLKTKKIKARGGGTSRPVPAMTTLSMPTDERAAWMQQVIEEEQSKPLQVSKDFMCKYEKQEEETEGRLDTEVAAHIRSLRNLRHQV 510
            + ++AE+KLLHWHKLAN+AALKAALLKTK +KA+     RPV      +     +A WMQ+VIEEEQ+KPLQV+KDF+ +Y++ E   E RLD EVA HI  LR LR Q+
Sbjct:    6 EKIKAEMKLLHWHKLANDAALKAALLKTKTMKAKDA--KRPVGVENVKA-----KAGWMQRVIEEEQAKPLQVTKDFVLEYQENERREEERLDAEVARHIECLRKLRVQI 108          
BLAST of mRNA_E-fasciculatus_F_contig13260.2457.1 vs. uniprot
Match: A0A7S2SV79_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV79_9STRA)

HSP 1 Score: 107 bits (267), Expect = 3.980e-25
Identity = 63/113 (55.75%), Postives = 82/113 (72.57%), Query Frame = 1
Query:  175 AMDNLRAEIKLLHWHKLANEAALKAALLKTKKIKARGGGTSRPV-PAMTTLSMPTDERAAWMQQVIEEEQSKPLQVSKDFMCKYEKQEEETEGRLDTEVAAHIRSLRNLRHQV 510
            ++++L+AE+KLL+WHK+ANEAALKAAL++TKK+K        PV PA   L     E+A+WMQQVIEEEQ KPLQVSKD++ +YE QE+  E RLD EV  HI  L  L+ +V
Sbjct:   74 SLEDLQAEMKLLNWHKMANEAALKAALIRTKKLKKI---EKAPVGPAAQNLQ----EKASWMQQVIEEEQRKPLQVSKDYVTQYEAQEKLEEERLDEEVRRHISVLSRLKEKV 179          
BLAST of mRNA_E-fasciculatus_F_contig13260.2457.1 vs. uniprot
Match: A0A5A8CZU6_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CZU6_CAFRO)

HSP 1 Score: 94.7 bits (234), Expect = 6.520e-21
Identity = 51/116 (43.97%), Postives = 77/116 (66.38%), Query Frame = 1
Query:  163 NATKAMDNLRAEIKLLHWHKLANEAALKAALLKTKKIKARGGGTSRPVPAMTTLSMPTDERAAWMQQVIEEEQSKPLQVSKDFMCKYEKQEEETEGRLDTEVAAHIRSLRNLRHQV 510
            N   ++  L  E+KLLHWHKLANE+ALKAA+++TK++K R    S   PA         ERAAW+Q ++ +EQ+KPL+V   F+  + ++EEE + RL+ EVA HI +L+ L+ ++
Sbjct:   41 NVPTSIRQLEDELKLLHWHKLANESALKAAIIRTKRVKGRDRDRSAARPAGDP------ERAAWLQAIVADEQAKPLEVDDAFLEAFRQREEEKQRRLEAEVAQHIDTLQMLKGRL 150          
BLAST of mRNA_E-fasciculatus_F_contig13260.2457.1 vs. uniprot
Match: A0A485LSC6_9STRA (Aste57867_23465 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LSC6_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 9.590e-21
Identity = 55/119 (46.22%), Postives = 77/119 (64.71%), Query Frame = 1
Query:  145 GATGDGNATKAMDNLRAEIKLLHWHKLANEAALKAALLKTKKIKARGGGTSRPVPAMTTLSMPTDERAAWMQQVIEEEQSKPLQVSKDFMCKYEKQEEETEGRLDTEVAAHIRSLRNLR 501
            G  GDG +T  ++ ++ E+KLL+WHKLANEAALKAAL+KTKK+K      S  + A        +ER   +QQ+ EEE  KPL+V+ +F+ KYE +E   E RL+ +VA HI  L+ L+
Sbjct:   45 GKKGDGGSTSQLEEIKQEMKLLNWHKLANEAALKAALIKTKKLKREDARQSSLLDA--------EERMERLQQIEEEENMKPLEVTAEFIRKYEDEERREERRLEADVARHISCLKKLK 155          
BLAST of mRNA_E-fasciculatus_F_contig13260.2457.1 vs. uniprot
Match: A0A5A8D0A2_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D0A2_CAFRO)

HSP 1 Score: 94.7 bits (234), Expect = 2.980e-20
Identity = 51/116 (43.97%), Postives = 77/116 (66.38%), Query Frame = 1
Query:  163 NATKAMDNLRAEIKLLHWHKLANEAALKAALLKTKKIKARGGGTSRPVPAMTTLSMPTDERAAWMQQVIEEEQSKPLQVSKDFMCKYEKQEEETEGRLDTEVAAHIRSLRNLRHQV 510
            N   ++  L  E+KLLHWHKLANE+ALKAA+++TK++K R    S   PA         ERAAW+Q ++ +EQ+KPL+V   F+  + ++EEE + RL+ EVA HI +L+ L+ ++
Sbjct:   41 NVPTSIRQLEDELKLLHWHKLANESALKAAIIRTKRVKGRDRDRSAARPAGDP------ERAAWLQAIVADEQAKPLEVDDAFLEAFRQREEEKQRRLEAEVAQHIDTLQMLKGRL 150          
BLAST of mRNA_E-fasciculatus_F_contig13260.2457.1 vs. uniprot
Match: H3GDU8_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GDU8_PHYRM)

HSP 1 Score: 96.7 bits (239), Expect = 4.020e-20
Identity = 71/178 (39.89%), Postives = 97/178 (54.49%), Query Frame = 1
Query:    1 HDGWVSEFEAFQWSKGQRNN--EGTPHAGGAPMSARSGHSGPT----TVARGMPGATGDGNAT--KAMDNLRAEIKLLHWHKLANEAALKAALLKTKKIKARGGGTSRPVPAMTTLSMPTDERAAWMQQVIEEEQSKPLQVSKDFMCKYEKQEEETEGRLDTEVAAHIRSLRNLRHQV 510
            + GWV E + +Q   GQ +   E T  +G A  +A S  SG T    T  + MP      +A      + L+ E+KLL+WHKLANEAALKAA++KT KIK      S+   A T      +ER    QQ+IEEEQ KPLQV+ +F    E + +  E +LD +V  HI+ LR L+  +
Sbjct:    7 YSGWVRELDEYQSGDGQYDERLEATSDSGKAAQAALSSRSGATAATNTSRKVMPRGASTASAAPISQAEELQQEMKLLNWHKLANEAALKAAIIKTNKIKQED---SQFASAFTQGER--EEREQRAQQIIEEEQLKPLQVNTEFFRNLEAKGQRDEAKLDDDVQRHIQHLRKLKESM 179          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13260.2457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLE6_ECTSI6.820e-8397.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CKD1_9STRA2.800e-2857.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2FVP2_9STRA1.870e-2746.43Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S4D705_HETAK2.270e-2646.03Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8J2SWN2_9STRA2.340e-2656.36Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2SV79_9STRA3.980e-2555.75Hypothetical protein (Fragment) n=2 Tax=Rhizochrom... [more]
A0A5A8CZU6_CAFRO6.520e-2143.97Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A485LSC6_9STRA9.590e-2146.22Aste57867_23465 protein n=1 Tax=Aphanomyces stella... [more]
A0A5A8D0A2_CAFRO2.980e-2043.97Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
H3GDU8_PHYRM4.020e-2039.89Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13260contigE-fasciculatus_F_contig13260:341..856 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score266.2
Seed ortholog evalue1.1e-68
Seed eggNOG ortholog2880.D7FLE6
EggNOG OGs2AVKU@1,2RZWM@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size516
Cds size516
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927829.47445-CDS-E-fasciculatus_F_contig13260:340..8561622927829.47445-CDS-E-fasciculatus_F_contig13260:340..856Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13260 341..856 -
1695995712.652585-CDS-E-fasciculatus_F_contig13260:340..8561695995712.652585-CDS-E-fasciculatus_F_contig13260:340..856Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13260 341..856 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13260.2457.1prot_E-fasciculatus_F_contig13260.2457.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13260 341..856 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13260.2457.1

>prot_E-fasciculatus_F_contig13260.2457.1 ID=prot_E-fasciculatus_F_contig13260.2457.1|Name=mRNA_E-fasciculatus_F_contig13260.2457.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=172bp
HDGWVSEFEAFQWSKGQRNNEGTPHAGGAPMSARSGHSGPTTVARGMPGA
TGDGNATKAMDNLRAEIKLLHWHKLANEAALKAALLKTKKIKARGGGTSR
PVPAMTTLSMPTDERAAWMQQVIEEEQSKPLQVSKDFMCKYEKQEEETEG
RLDTEVAAHIRSLRNLRHQVR*
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mRNA from alignment at E-fasciculatus_F_contig13260:341..856-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13260.2457.1 ID=mRNA_E-fasciculatus_F_contig13260.2457.1|Name=mRNA_E-fasciculatus_F_contig13260.2457.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=516bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13260:341..856- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CATGACGGCTGGGTGTCAGAATTCGAAGCGTTTCAATGGTCGAAGGGACA ACGCAACAACGAGGGTACGCCGCATGCAGGCGGCGCACCAATGTCCGCCC GCTCAGGGCATTCGGGGCCGACTACCGTGGCGCGTGGCATGCCGGGTGCA ACCGGTGATGGAAATGCGACCAAAGCGATGGATAACCTTCGCGCAGAGAT AAAACTGCTTCATTGGCACAAGTTGGCGAACGAGGCAGCCTTGAAGGCTG CTCTTTTGAAAACGAAGAAAATTAAGGCTCGGGGAGGGGGCACATCTAGG CCGGTCCCGGCCATGACGACACTGTCGATGCCCACAGACGAAAGGGCGGC TTGGATGCAGCAGGTGATCGAGGAAGAGCAGAGTAAGCCCCTCCAGGTCA GCAAGGACTTCATGTGCAAGTACGAGAAGCAGGAAGAGGAGACCGAGGGG AGACTGGACACGGAGGTCGCTGCGCACATCCGGAGCTTGAGGAACCTTCG CCACCAGGTAAGATAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13260:341..856-

>mRNA_E-fasciculatus_F_contig13260.2457.1 ID=mRNA_E-fasciculatus_F_contig13260.2457.1|Name=mRNA_E-fasciculatus_F_contig13260.2457.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1032bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13260:341..856- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CATGACGGCTGGGTGTCAGAATTCGAAGCGTTTCAATGGTCGAAGGGACA
ACGCAACAACGAGGGTACGCCGCATGCAGGCGGCGCACCAATGTCCGCCC
GCTCAGGGCATTCGGGGCCGACTACCGTGGCGCGTGGCATGCCGGGTGCA
ACCGGTGATGGAAATGCGACCAAAGCGATGGATAACCTTCGCGCAGAGAT
AAAACTGCTTCATTGGCACAAGTTGGCGAACGAGGCAGCCTTGAAGGCTG
CTCTTTTGAAAACGAAGAAAATTAAGGCTCGGGGAGGGGGCACATCTAGG
CCGGTCCCGGCCATGACGACACTGTCGATGCCCACAGACGAAAGGGCGGC
TTGGATGCAGCAGGTGATCGAGGAAGAGCAGAGTAAGCCCCTCCAGGTCA
GCAAGGACTTCATGTGCAAGTACGAGAAGCAGGAAGAGGAGACCGAGGGG
AGACTGGACACGGAGGTCGCTGCGCACATCCGGAGCTTGAGGAACCTTCG
CCACCAGGTAAGATAGCATGACGGCTGGGTGTCAGAATTCGAAGCGTTTC
AATGGTCGAAGGGACAACGCAACAACGAGGGTACGCCGCATGCAGGCGGC
GCACCAATGTCCGCCCGCTCAGGGCATTCGGGGCCGACTACCGTGGCGCG
TGGCATGCCGGGTGCAACCGGTGATGGAAATGCGACCAAAGCGATGGATA
ACCTTCGCGCAGAGATAAAACTGCTTCATTGGCACAAGTTGGCGAACGAG
GCAGCCTTGAAGGCTGCTCTTTTGAAAACGAAGAAAATTAAGGCTCGGGG
AGGGGGCACATCTAGGCCGGTCCCGGCCATGACGACACTGTCGATGCCCA
CAGACGAAAGGGCGGCTTGGATGCAGCAGGTGATCGAGGAAGAGCAGAGT
AAGCCCCTCCAGGTCAGCAAGGACTTCATGTGCAAGTACGAGAAGCAGGA
AGAGGAGACCGAGGGGAGACTGGACACGGAGGTCGCTGCGCACATCCGGA
GCTTGAGGAACCTTCGCCACCAGGTAAGATAG
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