mRNA_E-fasciculatus_F_contig1326.2456.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1326.2456.1
Unique NamemRNA_E-fasciculatus_F_contig1326.2456.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1326.2456.1 vs. uniprot
Match: D7FPE5_ECTSI (SET and MYND domain containing 1b n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPE5_ECTSI)

HSP 1 Score: 864 bits (2233), Expect = 1.700e-313
Identity = 447/502 (89.04%), Postives = 459/502 (91.43%), Query Frame = 1
Query:  235 MVDLVDESASEPSPETKSTSVGDPAPYARRSANLDARVEIRFDPKRGRGLFALRDIPAGTEVMRVPAAAAVLLDRS-KSSCGGCLLPTDTVGSLKKCHGFPLSFCAGCIKAGTVGGVSGVHSSATRELTKELNTICATSSGVDKDSLRLAADVFVRRKAGLLDDSEWGFLNSLESHDNEAHTMSLAPAELQKCTRLFKTLVDINISDEEVQAMYRRQAAVFGATTRQKCRITRNAHTVSPNTSKPGFGSVQGLFPCGALVNHSCLPNTFFHCVAEPSSPEGRPVVKQVLRSICNIRAGDELCCSYLSSGAAVGTVSERRDLLMGWGFRCACARCQSEAEEEKRLRRQRTPIDERTLKMLERLAQISCLGQKENAPALREEAYMPDLQLIAEFYSREKGKRLSPMLQYRVAVLMMEVTALISATNLFFRFMVCGFAADELFELRNAMAITCRQQQHMFATKVEVCDLGETQATNKLEGIRAVGKFAREDARQLHELYYGGQSK 1737
            MVDLVDESASE SPET+S+S GDP  YARR+ANLDARVE+RFDPKRGRGLFALRDIPAGTEVMRVPAAAAVLLDRS K SC GCLLPTDTVGSL+ CHGFPLSFCA C KA TVGGVSGVH+SAT ELTKELNTICATS G+DKDSLRLAADVFVRRKAGL DDSEWG LNSLESHDNEAHTMSLAPAEL KCTRLFKTLVD NISDE+VQAMYRR              ITRNAHTVSPNTSKPGFGSVQGLFPCGALVNHSCLPNTFFHCV E SSPEGRPVVKQVLRSI NIRAGDELC SYLSSG+AVGTVSERRDLLMGWGFRCACARC SEAEEEKRLRRQRTPIDER LKMLERLAQIS LGQ+ENAPALREEAYMPDLQLIAEFYSREKGK LSPMLQYRVAVLMMEVTALI ATNLFFRFMVCGFAADEL ELRNAMAITCRQQQ+MFATKVEVCDLGETQAT KLEGIRAVGKFAR DAR+LHELYYGGQSK
Sbjct:    1 MVDLVDESASESSPETRSSSDGDPTRYARRTANLDARVEVRFDPKRGRGLFALRDIPAGTEVMRVPAAAAVLLDRSRKGSCSGCLLPTDTVGSLEACHGFPLSFCAACKKATTVGGVSGVHNSATCELTKELNTICATSGGIDKDSLRLAADVFVRRKAGLFDDSEWGLLNSLESHDNEAHTMSLAPAELHKCTRLFKTLVDTNISDEDVQAMYRR--------------ITRNAHTVSPNTSKPGFGSVQGLFPCGALVNHSCLPNTFFHCVTESSSPEGRPVVKQVLRSIRNIRAGDELCYSYLSSGSAVGTVSERRDLLMGWGFRCACARCLSEAEEEKRLRRQRTPIDERALKMLERLAQISALGQRENAPALREEAYMPDLQLIAEFYSREKGKLLSPMLQYRVAVLMMEVTALIGATNLFFRFMVCGFAADELSELRNAMAITCRQQQYMFATKVEVCDLGETQATKKLEGIRAVGKFARNDARRLHELYYGGQSK 488          
BLAST of mRNA_E-fasciculatus_F_contig1326.2456.1 vs. uniprot
Match: D7FPE3_ECTSI (Set and mynd domain containing n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPE3_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 1.760e-32
Identity = 112/331 (33.84%), Postives = 161/331 (48.64%), Query Frame = 1
Query:  316 ARRSANLDARVEIRFDP---KRGRGLFALRDIPAGTEVMRVPAAAAVLLDRSKSS-CGGCLLPTDTVGSLKKCHGFPLSFCAG-CIKAG--------TVGGVSGVHSSATRELTKELNTICATSSGVDKDSLRLAADVFVRRKAGLLDDSEWGFLNSLESHDNEAHTM-----SLAPAELQKCTRLFKTLVDINISDEEVQAMYRRQAAVFGATTRQKCRITRNAHTVSPNT-SKPGFGSVQGLFPCGALVNHSCLPNTFFHCVAEPSSPEGRPVVKQVLRSICNIRAGDELCCSYLSSGAAVGTVSERRDLLMG-WGFRCACARCQSEAE 1248
            ARR   LD R ++R +P   KRGRG+FA+  +PAGTEV+    AAA+  DR + + C  CL   D    L KC      FC   C+ A         T G V G+      EL +  N     ++  + D LRL  +   RR AGL D+ EW  ++ L   ++E         +L P  +++          + +S EE+Q ++RR              + RN HTV P    +    +V G+FP  +LVNHSC PN  FH  +  + PEG P+ +  LR   ++ AG+E+C SYL+  A   T   RR+LL   WGF C C RC+ + +
Sbjct:  113 ARRRGQLDPRFQVRRNPARPKRGRGIFAVEAVPAGTEVLVAKQAAALPRDRYRPAFCRRCLTLLDK-SLLIKCRRCEDRFCGKECVIAAAGEGTHEVTCGLVEGLGEEQLSELGRGDN-----AAATETDILRLTVECMSRRGAGLSDEEEWIEIDDLVLPEDEGGGEGSGGGTLEPDVIREAQARLND-GGLEVSAEEIQTVHRR--------------LRRNFHTVQPEPLGRLLPPTVVGVFPAASLVNHSCEPNACFH--SRRAGPEGPPL-ELALRCTTDVSAGEEVCVSYLAHCADAATKEGRRELLQNVWGFSCDCPRCEDDTK 419          
BLAST of mRNA_E-fasciculatus_F_contig1326.2456.1 vs. uniprot
Match: A0A7S1AGI2_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AGI2_NOCSC)

HSP 1 Score: 85.1 bits (209), Expect = 4.730e-14
Identity = 97/337 (28.78%), Postives = 144/337 (42.73%), Query Frame = 1
Query:  373 GRGLFALRDIPAGTEVMRVPAAAAVLLDRS-KSSCGGCLLPTDTVGSLKKCHGFPLSFCAGCIKAGTV-----GGVSGVHSSATRELTKE-LNTICATSSGVDKDSLRLAADVFV------RRKAGLL-----DDSEWGFLNSLES---HDNEAHTMSLAPAELQKCTRLFKTLVDINISDEE-----VQAMYRRQAAVFGATTRQKCRITRNAHTVSPN-------TSKPG----FGSVQGLFPCGALVNHSCLPNTFFHCVAEPSSPEGRPVVKQVLRSICNIRAGDELCCSYLSSGAAVGTVSERRD-LLMGWGFRCACARCQSEAEEEKRLRR 1269
            GR   A R++ AG  V+R    AA L DR     C  C  PTD V     CH     FC+ C K+        G    V  + +   T+  L     +S+G     LRLA  +        R K  LL      D EW  + S +    HD+      L+P   +    L   L    + + E     V+ +   + A +    R  CRI+ NA T++P        TS       FG   GL+P GA++NHSC P+  +             ++ + LR +   R G+EL  +YL      GTV++RR  LL  +GF C C+ C++E+  +K+++R
Sbjct:   16 GRCYLATRNVSAGETVLRCAPIAAALHDRDVPKRCSRCFAPTDGVPCT--CHAI---FCSTCAKSSDAKREHRGECMAVKLALSDRKTRNALGLKSKSSTGTATTFLRLAVRLLSVRARHSRSKPVLLLGDPDGDGEW--IPSADEDVIHDSWEDVEELSPETDEALEALLARLQKGRVEELEGGVNAVRLLSGSRRASWDDVFRLLCRISMNAMTLAPEAQVRRALTSSKSRWKDFGI--GLYPSGAMLNHSCFPSCLWFV-------RSGTLIVETLRVV---RRGEELTIAYLPVS---GTVTQRRRRLLHAFGFHCVCSHCEAESNLQKKVQR 330          
BLAST of mRNA_E-fasciculatus_F_contig1326.2456.1 vs. uniprot
Match: A0A6H5KH60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH60_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 4.580e-11
Identity = 67/207 (32.37%), Postives = 98/207 (47.34%), Query Frame = 1
Query:  316 ARRSANLDARVEIRFDP---KRGRGLFALRDIPAGTEVMRVPAAAAVLLDRSKSS-CGGCLLPTDTVGSLKKCHGFPLSFCAG-CIKAG--------TVGGVSGVHSSATRELTKELNTICATSSGVDKDSLRLAADVFVRRKAGLLDDSEWGFLNSLESHDNEAHTM-----SLAPAELQKCTRLFKTLVDINISDEEVQAMYRRQ 882
            ARR   LD R ++R +P   KRGRG+FA+  +PAGTEV+    AAA+  DR + + C  CL   D    L KC      FC   C+ A         T G V G+      EL +  N     ++  + D LRL  +   RR AGL D+ EW  ++ L   ++E         +L P  +++          + +S EE+Q ++RRQ
Sbjct:  114 ARRRGQLDPRFQVRRNPARPKRGRGIFAVEAVPAGTEVLVARQAAALPRDRYRPAFCRRCLTLLDK-SLLIKCRRCEDRFCGKECVIAAAGEGTHEVTCGMVEGLGEEQLSELGRGDN-----AAATETDILRLTVECMSRRGAGLSDEEEWIEIDDLVLPEDEGXXXXXXGGTLEPDVIREAQARLND-GGLEVSAEEIQTVHRRQ 313          
BLAST of mRNA_E-fasciculatus_F_contig1326.2456.1 vs. uniprot
Match: A0A397UIR2_9GLOM (Uncharacterized protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397UIR2_9GLOM)

HSP 1 Score: 75.5 bits (184), Expect = 1.050e-10
Identity = 80/325 (24.62%), Postives = 141/325 (43.38%), Query Frame = 1
Query:  346 VEIRFDPKRGRGLFALRDIPAGTEVMRVPAAAAVLLDRSKS-SCGGCL-LPTDTVGSLKKCHGFPLSFC-AGCIKAGTVGGVSGVHSSATRELTKELNTICATSSGVDKDSLR---LAADVFVRRKAGLLDDSEWGFLNSLESHDN-------EAHTMSLAPAELQKCTRLFKTLVDINISDEEVQAMYRRQAAVFGATTRQKCRITRNAHTVSPNTSKPGFGSVQGLFPCGALVNHSCLPNTFFHCVAEPSSPEGRPVVKQVLRSICNIRAGDELCCSYLSSGAAVGTVSERRDLLMGWGFRCACARCQSE------AEEEKRL 1263
            + +  +P   R L  L+ IP G+ ++  P+ A   +    +  C  CL +P + + +  +CH     +C   C K          H      + K+       S  +D++ LR   L  + ++++K+    ++E   L  L    N        +H     P +L+K    FK++     SD ++Q + + +   +       CR + N   +  N   P FG  +G +  G+L+NHSC PN          +  G     Q+LRSI NI+AG+E+  SY+    A+   S ++ L   + F+C C RC S+       EEE+++
Sbjct:   13 LSLEENPTTYRALKTLKHIPKGSTIITSPSLACFPIPSMINVRCNNCLEIPIEPLKTCSRCH--KTFYCNVKCQKLAW-----SAHHKILCPIYKKEGNKTLDSDYMDEEMLRRIALRIEKYLKKKS--YHETETVSLTGLNEKVNCETFLTLMSHREKRTPEQLEK----FKSIAKNVFSDLDLQNITQDELITY------LCRFSCNNFNLDDNQLFP-FG--EGTYSIGSLINHSCRPNAIMMYSIGQQTNSG----SQILRSIENIKAGEEITISYID--VAMSRTSRQKLLNEKYFFKCQCPRCSSDNVSIDITEEERKV 309          
BLAST of mRNA_E-fasciculatus_F_contig1326.2456.1 vs. uniprot
Match: A0A7S1HKR9_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HKR9_HEMAN)

HSP 1 Score: 67.4 bits (163), Expect = 2.010e-8
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 1
Query:  985 GLFPCGALVNHSCLPNTFFHCVAEPSSPEGRPVVKQVLRSICNIRAGDELCCSYLSSGAAVGTVSERRDLLMGWGFRCACARC 1233
            G++P GA++NHSC PN   +   EP +       +QV+R+I  +R GDELC SY+ + +A     ER  L + +GF+CAC RC
Sbjct:  235 GVYPLGAILNHSCAPNCVLYY--EPRTH------RQVIRAISAVREGDELCHSYIDAASATPQRLER--LSICYGFQCACQRC 307          
BLAST of mRNA_E-fasciculatus_F_contig1326.2456.1 vs. uniprot
Match: K3W5M6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W5M6_GLOUD)

HSP 1 Score: 64.7 bits (156), Expect = 2.530e-7
Identity = 77/305 (25.25%), Postives = 123/305 (40.33%), Query Frame = 1
Query:  367 KRGRGLFALRDIPAGTEVMRVPAAAAVLLDRSKSSCGGCLLPTDTVGSLKKCHG-FPLSFCAGCIKAGTVGGVSGVHSSATRELTKELNTICATSSGVDKDSL-------RLAADVFVRRKAGLLDDSEWGFLNSLESHDNEAHTMSLAPAELQKCTRLFKTLVDINISDEEVQAMYRRQAAVFGATTRQKCRITRNAHTVSPNTSKP-GFGSVQGLFPCGALVNHSCLPNTFFHCVAEPSSPEGRPVVKQVLRSICNIRAGDELCCSYLSSGAAVGTVSERRDLLM-GWGFRCACARCQSEAEE 1251
            ++GRG  A + I  GT +++  A+A++    S S C  C   T     L KC G   + +C+   K   +    G+H       TKE          V   S+       R+AA +F+  +    D      L     +D+          ++ +   L       N      + +      + G   +  CR+  NA T+S +   P G G    +FP GAL NHSC PN    CV      +       V+ +I +++ GDEL  SY+     + + S+R+  L   + F C C+RC+  A E
Sbjct:   11 RKGRGALARQLIATGTRILQTSASASI----SASCCNWCF-STPQTQKLHKCGGCHRVKYCSR--KCQQLDWTRGLH-------TKECAAWKHVPKHVQGKSMQTVLLVTRMAAKLFLSDQEQTTDGQS--VLQLCHHYDDHGEGKLQQYHDMMQLVLLLLARSKFNTRGASFEEL---AELLEGKIVQLFCRVNCNAFTISDDLCTPLGIG----VFPHGALFNHSCDPN----CVVSFQQQQ------MVVHTIKDVQQGDELTISYIE---LLESTSKRQQALRESYFFECDCSRCRDAASE 279          
BLAST of mRNA_E-fasciculatus_F_contig1326.2456.1 vs. uniprot
Match: A0A835T5G6_CHLIN (SET domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835T5G6_CHLIN)

HSP 1 Score: 65.1 bits (157), Expect = 2.870e-7
Identity = 37/86 (43.02%), Postives = 49/86 (56.98%), Query Frame = 1
Query:  985 GLFPCGALVNHSCLPNTFFHCVAEPSSPEGRPVVKQVLRSICNIRAGDELCCSYLSSGAAVGTVSERRDLLMGWGFRCACARCQSE 1242
            GL+   AL+NHSC P    +CV       GR +V   +R++  IRAG+E+C SYL    A      RR LL  +GF CAC+RC+ E
Sbjct:  377 GLWTEHALINHSCAPAVCQYCV-------GRTMV---VRAVRRIRAGEEVCDSYLGPELAAPLQVRRRALLAQYGFTCACSRCRLE 452          
BLAST of mRNA_E-fasciculatus_F_contig1326.2456.1 vs. uniprot
Match: W9WIN5_9EURO (MYND-type zinc finger protein samB n=1 Tax=Cladophialophora yegresii CBS 114405 TaxID=1182544 RepID=W9WIN5_9EURO)

HSP 1 Score: 63.5 bits (153), Expect = 6.680e-7
Identity = 77/305 (25.25%), Postives = 123/305 (40.33%), Query Frame = 1
Query:  337 DARVEIRFDPKRGRGLFALRDIPAGTEVMRVPAAAAVLLDRSK--SSCGGCLLP-TDTVGSLKKCHGFPLSFCAGCIKAGTVGGVSGVHSSATRELTK-ELNTICATSSGVDKDSLRLAADVFVRRKAGLLDDSEWGFLNSLESHDNEAHTMSLAPAELQKCTRLFKTLVDINISDEEVQAMYRRQAAVFGATTRQKCRITRNAHTVSPNTSKPGFGSVQGLFPCGALVNHSCLPNTFFHC-VAEPSSPEGRPVVKQV-LRSICNIRAGDELCCSYLSSGAAVGTVSERRDLLMGWGFRCACARC 1233
            D +V  +    RG GLF  + I   ++++ +     + L+ +K  + C  C     D + +++   G  L  C GC             S A  E  + E          +   ++R    V  + KAGLL +SEW  L SLESH  +   +S   +  Q    + K +     +D   + + R             C +  N+ T++     P  G V  L P  ALVNHSC PNTF    +A+ S  +  P    + L ++  I   +E+  SY+ +   V    E  +L   + F C C  C
Sbjct:   11 DDQVRTKHVQGRGNGLFVTQQITPNSQILFIARPLLIALETAKLPTHCYFCYKSDVDPISAVEVDTGHALKTCTGCKVVRFCDRKC--QSRAWAEYHRLECKLFGRLHPRILPTTVRAIVRVLKQHKAGLLPESEWEQLLSLESHYGDL--ISAGGSRWQDIFIMMKGIKAYCGTDHSQETILRLA-----------CMLLVNSFTLTNPAFDP-LGMV--LHPQSALVNHSCDPNTFVRFDIAQQSDQDTLPPFGSISLHALRAISPDEEVTISYIDTTFPVAKRQE--ELRERYFFTCDCPLC 295          
BLAST of mRNA_E-fasciculatus_F_contig1326.2456.1 vs. uniprot
Match: A0A5D6XYG2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYG2_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.050e-6
Identity = 83/305 (27.21%), Postives = 122/305 (40.00%), Query Frame = 1
Query:  340 ARVEIRFDPKRGRGLFALRDIPAGTEVMRVPAAAAVLLDRSKSSCGGCLLPTDTVGS----LKKCHGFP-LSFC-AGCIKAGTVGGVSGVHSSATRELTKELNTICATSSGVDKDSLRLAADVFVRRKAGLLDDSEWGFLNSLESHDNEAHTMSLAPAELQKCTRLFKTLVDINISDEEVQAMYRRQAAVFGATTRQKCRITRNAHTVSPNTSKP-GFGSVQGLFPCGALVNHSCLPNTFFHCVAEPSSPEGRPVVKQVLRSICNIRAGDELCCSYLSSGAAVGTVSERRDLLMGWGFRCACARC 1233
            A V  +    RGR   A + + AGT V++  A AA+    S +SC  C       G     L +C G   L +C A C +   + G       A + +                 S+R AA   V   A L+     G     E     AH    A A+LQ+   +   +  +  + +     Y    A+   T +  CR+  NA T+S +   P G G    +FP GAL NHSC PN    CV   +  + R      +R+I ++   DEL  SY+       T + ++ L   + F C CARC
Sbjct:    4 ALVREQLRDGRGRCALAAQRVAAGTCVLQTRALAAI----SVTSCNWCFASASASGGGSARLSRCGGCRRLRYCSAACQRRDWIDGGHARECGAWKRIPA---------------SVRDAALQTVLLVARLV---AAGAHKQPEVAQLRAHYEEHAEAKLQQFREMALLVRSLLPAVD-----YPTDDALLRDTVQLLCRVNCNAFTISDDACAPVGIG----VFPHGALFNHSCAPN----CVVSFAGQDMR------VRAIADVAPDDELTISYVE--LLETTATRQQALRESYFFDCDCARC 265          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1326.2456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7FPE5_ECTSI1.700e-31389.04SET and MYND domain containing 1b n=1 Tax=Ectocarp... [more]
D7FPE3_ECTSI1.760e-3233.84Set and mynd domain containing n=1 Tax=Ectocarpus ... [more]
A0A7S1AGI2_NOCSC4.730e-1428.78Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A6H5KH60_9PHAE4.580e-1132.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A397UIR2_9GLOM1.050e-1024.62Uncharacterized protein n=2 Tax=Gigaspora TaxID=48... [more]
A0A7S1HKR9_HEMAN2.010e-842.17Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
K3W5M6_GLOUD2.530e-725.25Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A835T5G6_CHLIN2.870e-743.02SET domain-containing protein n=1 Tax=Chlamydomona... [more]
W9WIN5_9EURO6.680e-725.25MYND-type zinc finger protein samB n=1 Tax=Cladoph... [more]
A0A5D6XYG2_9STRA1.050e-627.21Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1326contigE-fasciculatus_F_contig1326:13842..17393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.1
Seed ortholog evalue7.9e-31
Seed eggNOG ortholog2880.D7FPE3
KEGG koko:K11426
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG2084@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSET domain protein
Ec32 orthologEc-14_004640.1
Exons5
Model size1740
Cds size1710
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1326.2456.1prot_E-fasciculatus_F_contig1326.2456.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1326 13842..17363 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927829.3814168-CDS-E-fasciculatus_F_contig1326:13841..142381622927829.3814168-CDS-E-fasciculatus_F_contig1326:13841..14238Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1326 13842..14238 -
1695995712.5748286-CDS-E-fasciculatus_F_contig1326:13841..142381695995712.5748286-CDS-E-fasciculatus_F_contig1326:13841..14238Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1326 13842..14238 -
1622927829.3916662-CDS-E-fasciculatus_F_contig1326:14604..147681622927829.3916662-CDS-E-fasciculatus_F_contig1326:14604..14768Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1326 14605..14768 -
1695995712.5869157-CDS-E-fasciculatus_F_contig1326:14604..147681695995712.5869157-CDS-E-fasciculatus_F_contig1326:14604..14768Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1326 14605..14768 -
1622927829.4016428-CDS-E-fasciculatus_F_contig1326:15185..154441622927829.4016428-CDS-E-fasciculatus_F_contig1326:15185..15444Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1326 15186..15444 -
1695995712.5966692-CDS-E-fasciculatus_F_contig1326:15185..154441695995712.5966692-CDS-E-fasciculatus_F_contig1326:15185..15444Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1326 15186..15444 -
1622927829.4132044-CDS-E-fasciculatus_F_contig1326:15846..167091622927829.4132044-CDS-E-fasciculatus_F_contig1326:15846..16709Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1326 15847..16709 -
1695995712.6118653-CDS-E-fasciculatus_F_contig1326:15846..167091695995712.6118653-CDS-E-fasciculatus_F_contig1326:15846..16709Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1326 15847..16709 -
1622927829.42363-CDS-E-fasciculatus_F_contig1326:17336..173631622927829.42363-CDS-E-fasciculatus_F_contig1326:17336..17363Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1326 17337..17363 -
1695995712.6231062-CDS-E-fasciculatus_F_contig1326:17336..173631695995712.6231062-CDS-E-fasciculatus_F_contig1326:17336..17363Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1326 17337..17363 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927829.4337935-UTR-E-fasciculatus_F_contig1326:17363..173931622927829.4337935-UTR-E-fasciculatus_F_contig1326:17363..17393Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1326 17364..17393 -
1695995712.6324606-UTR-E-fasciculatus_F_contig1326:17363..173931695995712.6324606-UTR-E-fasciculatus_F_contig1326:17363..17393Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1326 17364..17393 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1326.2456.1

>prot_E-fasciculatus_F_contig1326.2456.1 ID=prot_E-fasciculatus_F_contig1326.2456.1|Name=mRNA_E-fasciculatus_F_contig1326.2456.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=570bp
MPSFHEGCLVLFRSTGLLYTVVRWDEETALLQLAPAASRTNHREDSSNAD
NNNPPGVTSQRPRLAFEHMVDLVDESASEPSPETKSTSVGDPAPYARRSA
NLDARVEIRFDPKRGRGLFALRDIPAGTEVMRVPAAAAVLLDRSKSSCGG
CLLPTDTVGSLKKCHGFPLSFCAGCIKAGTVGGVSGVHSSATRELTKELN
TICATSSGVDKDSLRLAADVFVRRKAGLLDDSEWGFLNSLESHDNEAHTM
SLAPAELQKCTRLFKTLVDINISDEEVQAMYRRQAAVFGATTRQKCRITR
NAHTVSPNTSKPGFGSVQGLFPCGALVNHSCLPNTFFHCVAEPSSPEGRP
VVKQVLRSICNIRAGDELCCSYLSSGAAVGTVSERRDLLMGWGFRCACAR
CQSEAEEEKRLRRQRTPIDERTLKMLERLAQISCLGQKENAPALREEAYM
PDLQLIAEFYSREKGKRLSPMLQYRVAVLMMEVTALISATNLFFRFMVCG
FAADELFELRNAMAITCRQQQHMFATKVEVCDLGETQATNKLEGIRAVGK
FAREDARQLHELYYGGQSK*
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mRNA from alignment at E-fasciculatus_F_contig1326:13842..17393-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1326.2456.1 ID=mRNA_E-fasciculatus_F_contig1326.2456.1|Name=mRNA_E-fasciculatus_F_contig1326.2456.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3552bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1326:13842..17393- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCTACACCAGACACCACACACACCACCAGCATGCCATCTTTTCACGAGGG TTGTCTGGTGAGAGTGTGGGAGCACATGATGTCCTGCGACATCCTTTCAT TGAAAACTCGGCTTGGTCTAGTTTGACTGTATGTAGCACTCACTGATGGC GTGTGAGGTTTGAGCAGATGTACAAATATCCCGCACAATTGATCTCTAGA CTATCCCATTGATCCTGCTATCCTGCGTGCTCTCTGCCCACATGTTCGGG CTCTTGCCGTCATTGACGCCGCATTTCAACTCGTGTGTGGAGTTTCATGT GCATGGATTTCTCTTCTGTTCGTCGCCAATCGGTATTTTGGAACCCATCA CAGCAGTATCAACATGTCGGATGCATATATTCGTGATGCAAGGATGCAAC AGCAGTGTAGTACTCGAAGGGAAAGTGAGGACAGCAGGCAGAAAGCAACG AAAGAGGAGACACGACTATAAGTATCTATCGACTCTGGTTCGTGTCTGGA GAAAGGATGGCAATTTGACGTGCCACTCTATCTCACCAAACGTTACTTCA ATACTACTGCTGCAAGTACTTTTTAATGTTGAATTTGGTGTCTAGACTAT ACCACGACAACCGCGGTCTGCAAATCAACACGTCAACTTCATTCGTTCAC CGTTTGCGTTCCCCCCGCCGTGCCCGGCCTTCAGGTGCTCTTTCGTTCCA CGGGACTGTTATACACGGTTGTGCGATGGGACGAAGAAACCGCGTTGCTT CAGTTAGCACCTGCTGCCTCCCGCACGAACCACAGAGAGGACAGCAGCAA TGCCGACAACAACAATCCACCAGGGGTCACGTCCCAACGCCCGAGATTGG CTTTCGAGCACATGGTCGATCTCGTCGACGAAAGTGCCAGTGAGCCTTCG CCAGAGACAAAAAGCACCAGTGTGGGTGACCCGGCCCCGTACGCCCGACG TAGCGCGAACCTCGACGCCCGGGTCGAGATCCGATTCGACCCGAAGCGAG GCCGCGGATTGTTCGCTCTGCGAGATATTCCGGCGGGTACAGAAGTGATG CGGGTGCCCGCGGCAGCGGCAGTGTTGCTGGATCGCAGCAAGAGCTCGTG CGGGGGGTGTTTGCTACCGACCGACACAGTTGGTAGCCTGAAGAAATGCC ACGGCTTCCCCCTCAGCTTCTGTGCTGGCTGTATAAAGGCAGGCACCGTC GGCGGCGTAAGCGGTGTTCACAGCAGCGCCACTCGCGAGCTCACGAAGGA GTTGAACACGATCTGCGCGACAAGTAGTGGAGTCGACAAGGACAGCCTGA GACTTGCGGCCGATGTGTTCGTGCGGAGAAAGGCAGGCTTACTGGATGAT TCTGAATGGGGCTTTCTCAACAGTCTCGAGAGTCACGACAACGAGGCCCA CACGATGAGCTTAGCCCCTGCCGAGCTCCAGAAGTGCACACGCCTGTTCA AGACCCTGGTGGATATCAACATTTCGGACGAGGAAGTCCAGGCGATGTAC CGCAGGCAAGCAGCTGTATTCGGCGCCACCACACGTCAAAAATGTCGGTT GGGATTCCCAGAGGGAAATGAGGTTGACAAAGACGTGTACAGAGTCAGCT ACCGGACAGTATTGGGGGGCAGGCGCGTAACATTTCCTCTTTTGAGCCGG TTGTCTTGAGAGAATAGCAGGCAATAGAAGTACGTATCCGGACAGTTTCG CCTCGTAATATTGCTGAACCATCGTATTCACTCCAAGCGCGCCGATCTGC ATGCGGCTTTGACCCCACACGCCATTTTCGGTAGTCGCACCGGTTCCGCG GCCATCGTCCCTCCCTTCGAAACCATACATCGTGTTTTCTCTCCCCGTGG TACTTGGCCCGTAAACGTACTCCGCTCACACACTGCAAAATGTTGCCACT TCACCGACCACAACATATGCCCCACCATGCGCACCGTACCCGTCTTCAGG ATCACTCGCAACGCGCACACGGTGTCCCCCAATACATCCAAGCCTGGCTT TGGCTCGGTCCAGGGACTCTTCCCCTGTGGGGCTTTGGTAAATCACTCTT GCCTGCCCAATACGTTTTTCCACTGCGTGGCGGAACCTTCTTCTCCCGAG GGCAGGCCGGTCGTCAAGCAGGTGCTGCGAAGCATCTGCAACATCCGTGC GGGAGACGAGCTCTGTTGCTCTTACCTTTCCAGTGGTGCCGCCGTCGGTA CCGTGTCTGTGAGTAGTTCTCGGGGACGGGACAAAGAGACGAAAATTGTG GGTTTACTTGGTATACACTTGTAGTATATGATCGCTTTGGCAATTCAGAT GGCGAGAACCTTGGGTCTGTGGAATGTTTTAAGACCGAAACATCGTGTCC ACAGCTTACACGAGTCCCAGGTTCCAGCGAGATCGGAAATGAATCGCTAC GGAACACCGCGGAGAGCCACGTAGGATTGCCTCCCAAGACGCAGTCAACA TCGAAATTTAGGCGTATGTGGGGGTAAAACGCCCTTGTCCAATCCCCATC TCCCATGTGCTCTTTGCTGTCGTTAACGTCCGATCCGCACGACACCTGCT GCGGCACTGTTGTGCGCGCCGCTAGTAAATACTTTCGTTCGTGCTCTGGC ACCATGGTATTCTCGTCATCGACAGGAACGCCGCGATCTCCTTATGGGCT GGGGCTTTCGATGCGCTTGCGCGAGGTGCCAGAGCGAGGCTGAAGAGGAG AAACGCCTTCGAAGACAACGAACCCCGATCGACGAAAGGACGCTGAAAAT GCTTGAACGGCTTGCGCAGATCTCGTGCCTCGGGCAGAAGTGAGTGCATT GAGATTGCTGGCACTTGTCTGTTGGTCGAGTTTCGGGTTTCCTGAGCTCG TTCAACAAACCGGTGCAATCGAGTCTCCGTCAGCCGCTCTTCGTGCAGCG CGGGCTCCTCGCTTTGCTAGCCCCCCAATCGCCCGGCCCTCCCGCACTTT TTATCTCAGTATCTACTGGTTGGTTTTTCGCAGGCCATGTGCGATCTGGT CTCGCCGGCAGCTGTGTGCATGTGAATCGCAGTGCTGTGCCTTCTTCAAA CGTCTGTGGATGAAACTGTGTACGCTTGTGACGAAACACTTTTGCGTTCC CAAAGATATTGCCTCACATTCTCACCTGACCCACCCACGTTTTGGTCGAT TCCAGGGAGAACGCGCCAGCCCTGAGGGAAGAGGCGTACATGCCGGACCT CCAGCTTATAGCCGAATTCTACTCGCGCGAGAAAGGGAAGCGCCTCTCAC CAATGCTGCAATATCGTGTGGCGGTCTTGATGATGGAGGTAACGGCCCTC ATCAGCGCAACGAATCTGTTTTTCCGATTCATGGTTTGCGGATTCGCAGC CGATGAGTTGTTCGAGTTACGCAATGCCATGGCGATCACATGTCGCCAAC AGCAGCACATGTTCGCAACGAAAGTCGAAGTTTGTGATCTTGGGGAGACG CAAGCGACTAACAAGCTGGAGGGTATCAGGGCCGTTGGGAAGTTCGCTCG CGAAGATGCGCGGCAACTCCACGAGCTGTATTACGGTGGGCAATCGAAGT AG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1326:13842..17393-

>mRNA_E-fasciculatus_F_contig1326.2456.1 ID=mRNA_E-fasciculatus_F_contig1326.2456.1|Name=mRNA_E-fasciculatus_F_contig1326.2456.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3420bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1326:13842..17393- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCATCTTTTCACGAGGGTTGTCTGATGCCATCTTTTCACGAGGGTTG
TCTGGTGCTCTTTCGTTCCACGGGACTGTTATACACGGTTGTGCGATGGG
ACGAAGAAACCGCGTTGCTTCAGTTAGCACCTGCTGCCTCCCGCACGAAC
CACAGAGAGGACAGCAGCAATGCCGACAACAACAATCCACCAGGGGTCAC
GTCCCAACGCCCGAGATTGGCTTTCGAGCACATGGTCGATCTCGTCGACG
AAAGTGCCAGTGAGCCTTCGCCAGAGACAAAAAGCACCAGTGTGGGTGAC
CCGGCCCCGTACGCCCGACGTAGCGCGAACCTCGACGCCCGGGTCGAGAT
CCGATTCGACCCGAAGCGAGGCCGCGGATTGTTCGCTCTGCGAGATATTC
CGGCGGGTACAGAAGTGATGCGGGTGCCCGCGGCAGCGGCAGTGTTGCTG
GATCGCAGCAAGAGCTCGTGCGGGGGGTGTTTGCTACCGACCGACACAGT
TGGTAGCCTGAAGAAATGCCACGGCTTCCCCCTCAGCTTCTGTGCTGGCT
GTATAAAGGCAGGCACCGTCGGCGGCGTAAGCGGTGTTCACAGCAGCGCC
ACTCGCGAGCTCACGAAGGAGTTGAACACGATCTGCGCGACAAGTAGTGG
AGTCGACAAGGACAGCCTGAGACTTGCGGCCGATGTGTTCGTGCGGAGAA
AGGCAGGCTTACTGGATGATTCTGAATGGGGCTTTCTCAACAGTCTCGAG
AGTCACGACAACGAGGCCCACACGATGAGCTTAGCCCCTGCCGAGCTCCA
GAAGTGCACACGCCTGTTCAAGACCCTGGTGGATATCAACATTTCGGACG
AGGAAGTCCAGGCGATGTACCGCAGGCAAGCAGCTGTATTCGGCGCCACC
ACACGTCAAAAATGTCGGTGCTCTTTCGTTCCACGGGACTGTTATACACG
GTTGTGCGATGGGACGAAGAAACCGCGTTGCTTCAGTTAGCACCTGCTGC
CTCCCGCACGAACCACAGAGAGGACAGCAGCAATGCCGACAACAACAATC
CACCAGGGGTCACGTCCCAACGCCCGAGATTGGCTTTCGAGCACATGGTC
GATCTCGTCGACGAAAGTGCCAGTGAGCCTTCGCCAGAGACAAAAAGCAC
CAGTGTGGGTGACCCGGCCCCGTACGCCCGACGTAGCGCGAACCTCGACG
CCCGGGTCGAGATCCGATTCGACCCGAAGCGAGGCCGCGGATTGTTCGCT
CTGCGAGATATTCCGGCGGGTACAGAAGTGATGCGGGTGCCCGCGGCAGC
GGCAGTGTTGCTGGATCGCAGCAAGAGCTCGTGCGGGGGGTGTTTGCTAC
CGACCGACACAGTTGGTAGCCTGAAGAAATGCCACGGCTTCCCCCTCAGC
TTCTGTGCTGGCTGTATAAAGGCAGGCACCGTCGGCGGCGTAAGCGGTGT
TCACAGCAGCGCCACTCGCGAGCTCACGAAGGAGTTGAACACGATCTGCG
CGACAAGTAGTGGAGTCGACAAGGACAGCCTGAGACTTGCGGCCGATGTG
TTCGTGCGGAGAAAGGCAGGCTTACTGGATGATTCTGAATGGGGCTTTCT
CAACAGTCTCGAGAGTCACGACAACGAGGCCCACACGATGAGCTTAGCCC
CTGCCGAGCTCCAGAAGTGCACACGCCTGTTCAAGACCCTGGTGGATATC
AACATTTCGGACGAGGAAGTCCAGGCGATGTACCGCAGGCAAGCAGCTGT
ATTCGGCGCCACCACACGTCAAAAATGTCGGATCACTCGCAACGCGCACA
CGGTGTCCCCCAATACATCCAAGCCTGGCTTTGGCTCGGTCCAGGGACTC
TTCCCCTGTGGGGCTTTGGTAAATCACTCTTGCCTGCCCAATACGTTTTT
CCACTGCGTGGCGGAACCTTCTTCTCCCGAGGGCAGGCCGGTCGTCAAGC
AGGTGCTGCGAAGCATCTGCAACATCCGTGCGGGAGACGAGCTCTGTTGC
TCTTACCTTTCCAGTGGTGCCGCCGTCGGTACCGTGTCTGATCACTCGCA
ACGCGCACACGGTGTCCCCCAATACATCCAAGCCTGGCTTTGGCTCGGTC
CAGGGACTCTTCCCCTGTGGGGCTTTGGTAAATCACTCTTGCCTGCCCAA
TACGTTTTTCCACTGCGTGGCGGAACCTTCTTCTCCCGAGGGCAGGCCGG
TCGTCAAGCAGGTGCTGCGAAGCATCTGCAACATCCGTGCGGGAGACGAG
CTCTGTTGCTCTTACCTTTCCAGTGGTGCCGCCGTCGGTACCGTGTCTGA
ACGCCGCGATCTCCTTATGGGCTGGGGCTTTCGATGCGCTTGCGCGAGGT
GCCAGAGCGAGGCTGAAGAGGAGAAACGCCTTCGAAGACAACGAACCCCG
ATCGACGAAAGGACGCTGAAAATGCTTGAACGGCTTGCGCAGATCTCGTG
CCTCGGGCAGAAGAACGCCGCGATCTCCTTATGGGCTGGGGCTTTCGATG
CGCTTGCGCGAGGTGCCAGAGCGAGGCTGAAGAGGAGAAACGCCTTCGAA
GACAACGAACCCCGATCGACGAAAGGACGCTGAAAATGCTTGAACGGCTT
GCGCAGATCTCGTGCCTCGGGCAGAAGGAGAACGCGCCAGCCCTGAGGGA
AGAGGCGTACATGCCGGACCTCCAGCTTATAGCCGAATTCTACTCGCGCG
AGAAAGGGAAGCGCCTCTCACCAATGCTGCAATATCGTGTGGCGGTCTTG
ATGATGGAGGTAACGGCCCTCATCAGCGCAACGAATCTGTTTTTCCGATT
CATGGTTTGCGGATTCGCAGCCGATGAGTTGTTCGAGTTACGCAATGCCA
TGGCGATCACATGTCGCCAACAGCAGCACATGTTCGCAACGAAAGTCGAA
GTTTGTGATCTTGGGGAGACGCAAGCGACTAACAAGCTGGAGGGTATCAG
GGCCGTTGGGAAGTTCGCTCGCGAAGATGCGCGGCAACTCCACGAGCTGT
ATTACGGTGGGCAATCGAAGTAGGGAGAACGCGCCAGCCCTGAGGGAAGA
GGCGTACATGCCGGACCTCCAGCTTATAGCCGAATTCTACTCGCGCGAGA
AAGGGAAGCGCCTCTCACCAATGCTGCAATATCGTGTGGCGGTCTTGATG
ATGGAGGTAACGGCCCTCATCAGCGCAACGAATCTGTTTTTCCGATTCAT
GGTTTGCGGATTCGCAGCCGATGAGTTGTTCGAGTTACGCAATGCCATGG
CGATCACATGTCGCCAACAGCAGCACATGTTCGCAACGAAAGTCGAAGTT
TGTGATCTTGGGGAGACGCAAGCGACTAACAAGCTGGAGGGTATCAGGGC
CGTTGGGAAGTTCGCTCGCGAAGATGCGCGGCAACTCCACGAGCTGTATT
ACGGTGGGCAATCGAAGTAG
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