mRNA_E-fasciculatus_F_contig13237.2441.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13237.2441.1
Unique NamemRNA_E-fasciculatus_F_contig13237.2441.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13237.2441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13237contigE-fasciculatus_F_contig13237:3145..3706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size562
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13237.2441.1prot_E-fasciculatus_F_contig13237.2441.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13237 3260..3679 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927827.0844283-UTR-E-fasciculatus_F_contig13237:3144..32591622927827.0844283-UTR-E-fasciculatus_F_contig13237:3144..3259Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13237 3145..3259 +
1695995711.6738951-UTR-E-fasciculatus_F_contig13237:3144..32591695995711.6738951-UTR-E-fasciculatus_F_contig13237:3144..3259Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13237 3145..3259 +
1622927827.1142526-UTR-E-fasciculatus_F_contig13237:3679..37061622927827.1142526-UTR-E-fasciculatus_F_contig13237:3679..3706Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13237 3680..3706 +
1695995711.6943283-UTR-E-fasciculatus_F_contig13237:3679..37061695995711.6943283-UTR-E-fasciculatus_F_contig13237:3679..3706Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13237 3680..3706 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927827.1006894-CDS-E-fasciculatus_F_contig13237:3259..36791622927827.1006894-CDS-E-fasciculatus_F_contig13237:3259..3679Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13237 3260..3679 +
1695995711.68617-CDS-E-fasciculatus_F_contig13237:3259..36791695995711.68617-CDS-E-fasciculatus_F_contig13237:3259..3679Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13237 3260..3679 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13237.2441.1

>prot_E-fasciculatus_F_contig13237.2441.1 ID=prot_E-fasciculatus_F_contig13237.2441.1|Name=mRNA_E-fasciculatus_F_contig13237.2441.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=140bp
MMMMIAVAAIISRQSATTKTTMTMIAVSSALAARARIPLTSTTNCCNSDC
NDGGAFVTCGVANNDDGDEGGWVSATAWPWRTPRMAAVIMAPTGADDRLL
TTLSLPPRRRGATKWHDSAIAIARAEGRSAAITQTFTFV*
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mRNA from alignment at E-fasciculatus_F_contig13237:3145..3706+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13237.2441.1 ID=mRNA_E-fasciculatus_F_contig13237.2441.1|Name=mRNA_E-fasciculatus_F_contig13237.2441.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=562bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13237:3145..3706+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGAAGGTTTTGTAGAGGGAAAAGGCGGAAACTCATCATCGGAGGAAAA
GAGAACGAAAACAAAACTAGCGCGACCGGACGACGAGCCGGAGTTCGGCA
GCAGCGGCGGCGGCGATGATGATGATGATAGCAGTAGCAGCAATTATCAG
CAGGCAGAGTGCGACGACGAAGACGACGATGACGATGATAGCAGTTTCTT
CAGCGCTTGCAGCACGAGCGAGAATCCCGTTGACATCGACGACGAACTGC
TGTAACAGCGATTGCAACGACGGCGGTGCTTTTGTCACGTGTGGGGTTGC
CAACAACGACGACGGCGATGAGGGAGGCTGGGTCTCAGCAACGGCTTGGC
CCTGGCGCACTCCGCGCATGGCGGCCGTCATCATGGCTCCGACGGGCGCG
GATGACAGGCTGCTGACGACGTTGTCACTGCCGCCGCGGCGACGAGGGGC
CACCAAATGGCACGATAGCGCCATCGCTATCGCTCGTGCCGAAGGCAGGA
GTGCAGCGATCACGCAAACGTTTACGTTTGTTTGATTTCATGTGTGTGGC
GGTTCTCCGAAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13237:3145..3706+

>mRNA_E-fasciculatus_F_contig13237.2441.1 ID=mRNA_E-fasciculatus_F_contig13237.2441.1|Name=mRNA_E-fasciculatus_F_contig13237.2441.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=840bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13237:3145..3706+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATGATGATGATAGCAGTAGCAGCAATTATCAGCAGGCAGAGTGCGAC
GACGAAGACGACGATGACGATGATAGCAGTTTCTTCAGCGCTTGCAGCAC
GAGCGAGAATCCCGTTGACATCGACGACGAACTGCTGTAACAGCGATTGC
AACGACGGCGGTGCTTTTGTCACGTGTGGGGTTGCCAACAACGACGACGG
CGATGAGGGAGGCTGGGTCTCAGCAACGGCTTGGCCCTGGCGCACTCCGC
GCATGGCGGCCGTCATCATGGCTCCGACGGGCGCGGATGACAGGCTGCTG
ACGACGTTGTCACTGCCGCCGCGGCGACGAGGGGCCACCAAATGGCACGA
TAGCGCCATCGCTATCGCTCGTGCCGAAGGCAGGAGTGCAGCGATCACGC
AAACGTTTACGTTTGTTTGAATGATGATGATGATAGCAGTAGCAGCAATT
ATCAGCAGGCAGAGTGCGACGACGAAGACGACGATGACGATGATAGCAGT
TTCTTCAGCGCTTGCAGCACGAGCGAGAATCCCGTTGACATCGACGACGA
ACTGCTGTAACAGCGATTGCAACGACGGCGGTGCTTTTGTCACGTGTGGG
GTTGCCAACAACGACGACGGCGATGAGGGAGGCTGGGTCTCAGCAACGGC
TTGGCCCTGGCGCACTCCGCGCATGGCGGCCGTCATCATGGCTCCGACGG
GCGCGGATGACAGGCTGCTGACGACGTTGTCACTGCCGCCGCGGCGACGA
GGGGCCACCAAATGGCACGATAGCGCCATCGCTATCGCTCGTGCCGAAGG
CAGGAGTGCAGCGATCACGCAAACGTTTACGTTTGTTTGA
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