mRNA_E-fasciculatus_F_contig1321.2420.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1321.2420.1
Unique NamemRNA_E-fasciculatus_F_contig1321.2420.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1321.2420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1321contigE-fasciculatus_F_contig1321:64..5071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size613
Cds size612
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1321.2420.1prot_E-fasciculatus_F_contig1321.2420.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1321 64..5071 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927824.5908532-CDS-E-fasciculatus_F_contig1321:63..1931622927824.5908532-CDS-E-fasciculatus_F_contig1321:63..193Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1321 64..193 -
1695995710.627368-CDS-E-fasciculatus_F_contig1321:63..1931695995710.627368-CDS-E-fasciculatus_F_contig1321:63..193Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1321 64..193 -
1622927824.6026604-CDS-E-fasciculatus_F_contig1321:756..8401622927824.6026604-CDS-E-fasciculatus_F_contig1321:756..840Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1321 757..840 -
1695995710.635859-CDS-E-fasciculatus_F_contig1321:756..8401695995710.635859-CDS-E-fasciculatus_F_contig1321:756..840Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1321 757..840 -
1622927824.6178222-CDS-E-fasciculatus_F_contig1321:4673..50711622927824.6178222-CDS-E-fasciculatus_F_contig1321:4673..5071Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1321 4674..5071 -
1695995710.6449435-CDS-E-fasciculatus_F_contig1321:4673..50711695995710.6449435-CDS-E-fasciculatus_F_contig1321:4673..5071Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1321 4674..5071 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1321.2420.1

>prot_E-fasciculatus_F_contig1321.2420.1 ID=prot_E-fasciculatus_F_contig1321.2420.1|Name=mRNA_E-fasciculatus_F_contig1321.2420.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=204bp
RHSPRVCATSTAGCARDSERERASGVHVRRGEEKRRREMTRMSLRRALSL
RVGGGGGAAASRNTEGYQQNPPQQQQQQQQQQQQPLTPGQAAGGGPDEGH
RQQQQQPPMQQTPEKKAEMNIDPVSSTPYLEGRGEDLDMPPQLAKLGEKL
DLRRARRVQSSRVRPESIRLFEASASHSHHGVTSRGVSGALEAAIAGSTG
RGVG
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mRNA from alignment at E-fasciculatus_F_contig1321:64..5071-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1321.2420.1 ID=mRNA_E-fasciculatus_F_contig1321.2420.1|Name=mRNA_E-fasciculatus_F_contig1321.2420.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5008bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1321:64..5071- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCCATTCCCCCAGGGTGTGTGCAACGTCGACCGCAGGCTGCGCGAGGGA
CAGCGAGAGGGAGAGGGCGAGCGGTGTCCACGTGCGTCGGGGGGAGGAAA
AGCGGCGGCGCGAGATGACGCGAATGTCGCTGCGCCGGGCGCTGTCTTTG
CGAGTCGGCGGCGGCGGCGGGGCAGCAGCCTCACGGAACACCGAAGGTTA
CCAGCAGAACCCCCCACAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGC
AACCTCTCACGCCGGGGCAGGCTGCCGGCGGAGGCCCCGATGAGGGCCAC
CGACAACAGCAGCAGCAGCCTCCGATGCAGCAGACACCGGAGAAGAAGGC
GGAGATGAACATTGACCCCGTGAGCAGCACGCCGTACTTGGAGGGCAGGT
GCGCGAGAGAAATATACTTGTGCTCGCTGCTCGCTGCTGCTGTTGGCGCT
GGCTGTGCTCCTGTGTACAGAGGCAGCGCAAGAGGCTGGCTCCTTCTTCA
GAGTCAGTCGTAGATATGCATAGTATGAAAACCCCGCCCGCCCCATCCAT
GCCCGCGTTGGTGTCGTGTAAACAGATGGCCTACGTGCAGAGATCTCTAG
GCCACCCTCTGGTCTGGAGGAGTATCCTCAACACCATAGATGTTGGTTCC
GAGGTGCCCCACACCAGGTTGTGCGTGCCGCCAGCATGATTCTCTCTGCG
CAACACATGCACAAACGACACACGAAAATAAGAGAGAGAGAGAGAGTCAG
CAGCGGTAGCAAGCGGAGAGAGAGGCTGTTGGCAGTCTGCGGACACTGCC
CCCCTCCTCGAAGTTGAAATGTTTGTTCTCTTCCTGTCCCCGCCTCCCGT
TGGTGTTATTATTGCCTGGAAAGCGTGTGTGTGCTGCGGCGTGCCCTTGG
AAGAGCAACGGCGGTTGTTGGTGTCTACTGGACTACTGGTAGAGCAGTAT
TCCGGAAGGGTTTGCCTTGTCCGGGGGCGCTCTGACATTTTGACTGTCGA
TGGAAGAAACCACATCCAATGAGGGTCGTGATTTGAATTGGGGACACTTG
CTATTTCGGCAATTGTTTTCAGGTGCTGTGCAGAGGCAGTTTCCGCCCCC
CCTTGAAATTTGCTCGCAAGCGTGGAGCCTGCCTACTTTAACTTGTACGT
TGCGCCTTCGGGGGGCAAAGGTGGTTTCCATATCGGAATGCAAAGCTTGG
AACATTCTCTGGTCCGTTCGGACGGGAGTCCAACGGCTTTGGACACAAGA
GCATCACCTTGGCCTACATGTATGTGCTTTGCCTTTGGTATAATAGCGCT
CCTCTCTCCTTTATTTATCTTCGCAAGTGCCGCGACTGCTGTGCCATCAA
TATACGTACAACCAACCTCGGCCTTTAACGCCAACCAGAGACGATTGACC
GACACGTCCGCTGCTGTAGACCACAATAAGAGCCAGGCTCATGTTACTTG
TCCTTGGCTAATATACGGACCGGAGGTTTCGTGCTGAATCAAGCGCTCTC
CGCTTGCGTGCACAAGAAGCCAAGGGACAACGTTGCATCTCTCAGCACGT
TGGAGCAAAGAAAGCACAGAGAATGGGAGAGAGGGGGTGCGTTTTAGATA
GGCAGGCGGGCACGAACTTGTGTTTTGGCCACAGAGTTCCTCCTGCCGCC
GTGACCAAGAAGCCAGAACACCTTCAACAAGTTTCTCTTGGCTCACCCAC
ATACACACATACAGCACGTTTACATGTGCTCCTTAAGATGCACAGACATG
TACATGCAGCACGTGTATGTGAACATACACACATACAGCACCTGTTTGTG
AGGAGGCCGATTGAAGTGAAGGTAATCGAGGTGTAAGGTGTCAAGACCTC
GCGCGATAACACACCACGCCTGGATCTACGGACAGCAGGACCCATGTGCG
AGGGACGAATACTCTCCTACAAATGTTGCACGACCCTGCAGGCAACACAG
GTCCTCAAAAGATAGATTGCTCTGCTGTGGTTGTTTGCGTGGTGGGGACC
AGCGAAGAAGTGTGGCGATGTTCTTGTGCCGGCAGTCAGGTTATCGCGCA
GCCAATAGCGACGACCACAACCCACATGTCAAATCCCCAACAAGTTGGAA
CTGGAGACGTGTGGACCGCGATTTTCACAGCATCGAACGCTCTAGGGCCA
CACGCACAGCAGCAACGAGGCGACGTTGGGGATACTGCTGTAGTTCCTTG
CCAACAACAGGCCAGCAGTTGAGGTCTTGCAAGTACCTGAGACCTTGGGC
GACCAGGACTCTCGCCTAAATATGCACTTTTTCATATGCATATTTGTGTT
GTCTTCATTTCATATCAGCGGTCACAGCATTTCTGCCTTTTGCTCCACAA
CCCGTGGTCGCACAGCACAGAAGAGGCCTCATGCAACCCACCCCTCCCGC
GGTGCGTTGCCTTCGATTGTTCTATGCGAGAAGGGTGGCAGCATTCTCTT
CCCTCTCTGTGTACACACGAACTATGTAGCGCTTTCCACCCAGGCCAGGA
ACGGGAGCGAGAGAAAAACTCACCTTTGCAAGAAAAGCTCTCGCTTACGT
ACGTACGCCGGGAATCGAGCCCCTGACCCTGGCCACTAGTAGGTTTTCGA
GGACACCAACTAGACTAACGGGGCGACCGGCATGCCCGTTCTTTTCAGCG
AAAAAAAGAGAGTAAAGGAGTGGGCGGCTAACCGGGGGTATGTATGTAAC
GAGGTAGGTAAGTCCGGATAAATTAAGGTTCCTAGATGCCGAGAAGGAGG
CCACCGATATTCTGCCGATTTTGACAATCATCGAAGGGGCGGGGTGTACT
CGGTTTACTGCCATAGGTTGCACAAAATATCACACCCGCTGGACCGATTT
TCGAAGCTCGATTCCTCGGCAGGAAGAGCAGCGTGACGGTGCCAAAAATG
ACGGCGTTTGAACCGACCGTTTCGTCGAGAGAGAGATTTCCGAAAGCAGC
ATTCCCTTTGATTTCGACATCCTCTTGGTCGTGGAGTACGGTAATCGAGC
TACATAGCTTGAAATATCGGTCCAGGGGGTGTGATATCTTACGCAACCTA
CGATAGTCTCGACCCGCCGTTCTCCTGGCTGGTGACTTCTTCTTTCACGC
CGACGTGGTGGCAGAAATCCGTCCTACATCGATGAAACTATTAAAACTAA
AACTTTGGTTGACGCAAGCGCAAGAAACGGTCAAGCGGAGCCACTGTTTT
CCGCCCCCACGTGGTGGTGAAGCAAAAGTCCGCAGTGAGTGAGTGGTGTG
CACGGCGATGCTATAGTTGAAGCGCAGCGGGCGAGGGTACTCGAGGAGAT
TGATTTCGTTCCTAAAGGACGCATGATGGATGATAGAGCCTCTCTCGGTG
AAACTATGGTTGACGCACGCGGGGTTGGCGAGGAACGAGGAACCGTGGGA
GAAATACCAGTTGGCCATCGTCCGTCCGTACAACGCTGTTCAACACAAAC
TTGTTACATAAATTCGTTTCATTGCTATTCTATCACGGACTCCTTTTCGG
TGGAAGAGACGGATTTGTTGTGTTGATGGTAACAAAAATGAAGAGAGCGT
CGTTTCTCGCGCTTGGATGATCACCTGCCGGAAGTACCGTAGGCTGCGAC
GGAAGATATCATACCCATTAGACCGGTCTTCAAAAGCTTGATTACTCCAC
ACGACGAAGCGGGCGCCGAAAATCGATTGCAGTAAGCAAGTCGATAAGGC
CCACTCGCTCTGTTTGCCTCCTCTTTTGGTACGTATGTATGTATTTGTAG
CCTCTGCGCGACTCCCGTTTTTTCAGCGGGGCATAGGCTCCGTCAAGTCT
CCCATTCCCTCACCTCCCGCGCGCGAGAGAGGGAGCAATGTACTTTCTCT
TTCTGGCGGCTCGCCCGTTGCGCGCCAACAGTGAACCACGTAGACATGCC
TGGCTGTCCACTATTAGGTAGGCGTGCGTTTGCGGTACGTTTCCTCTGGA
GGGGTATAGGCTCAATCAGTTGCCGTGTGCCACCTTGTATGCCGAACCGC
TCGATCCGAGGCGGCCGGACTTGTTTGGGTTCCGCAGTTTCAACCTCTTG
ACCATCACCCACCAAACCAAACTCGTGAACTCAATTTTTTTGTTGCTTGT
CACTTTTTGTCCCAACCCTCCCGGCCCGGGGGTGTCGAGGGGCTTCCGTA
GTTTCACGTTATTGATCTCTACCCACCCATTTTTTTATTTTTGTCGCGTT
GTGTCCCAAACCGCTCTGTCCCACGCGGCAGGGGCGAGGACCTGGACATG
CCGCCCCAGCTCGCCAAGCTCGGGGAGAAGCTGGACCTCCGGAGAGCTAG
GCGTGTGCAGTCAAGGTGAAGAGAAGGGCGTCCGGTTTTGTTTTTCGTGC
GCTACGGCTTGCTTGCCGTATTCGACACAAGATAACACACCCGCTGGGCC
GACGCTTAAAGCTCGATTTCTCAACAGCAAAAAGAGTCACAGCGCCGAAA
ATGGCGGCGTTGGCGTCGAAGCCGTCTCGTCAAGAGAGAGTTTTCCGATA
ATATATCGTTTCGTTGATGTATCTCTTTGTGGTGTCGTAATCGAGCTTTG
CAAATCGGTCCAGTGGGTGTGTTATCTAGTGTCGTACATGTATACGGAAA
GTGTGTGCAGTCAAGGTGCAAAAAAGGCGTCCATTGCATGTTTTTTGTAC
ACTGGGACTTGTTGAAGTCATCCCTCCCATGAGTAGCCAGGAGAAGACGG
CAGCTGTACTGGGGCATAGGAAGTGGGTTGAAAAGGCGGGAATTGATATC
GATAAGATCGGTCTTGTGGGAACAATGCTCCGTCCTTTCGAGGACGCCTG
GTCCATGGTCTAATAGCTAAGGCATGCAACCCATGAGTACCCCCCCCAAC
CCCACCCCCGTTGGCCCGTTTTTCACAGCCGAGTGCGGCCAGAATCGATC
AGGCTATTCGAGGCGTCGGCATCGCATTCGCACCACGGTGTTACGTCGAG
GGGGGTGTCGGGCGCGCTGGAGGCAGCGATTGCGGGGAGCACTGGGAGGG
GGGTCGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1321:64..5071-

>mRNA_E-fasciculatus_F_contig1321.2420.1 ID=mRNA_E-fasciculatus_F_contig1321.2420.1|Name=mRNA_E-fasciculatus_F_contig1321.2420.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1224bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1321:64..5071- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCCATTCCCCCAGGGTGTGTGCAACGTCGACCGCAGGCTGCGCGAGGGA
CAGCGAGAGGGAGAGGGCGAGCGGTGTCCACGTGCGTCGGGGGGAGGAAA
AGCGGCGGCGCGAGATGACGCGAATGTCGCTGCGCCGGGCGCTGTCTTTG
CGAGTCGGCGGCGGCGGCGGGGCAGCAGCCTCACGGAACACCGAAGGTTA
CCAGCAGAACCCCCCACAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGC
AACCTCTCACGCCGGGGCAGGCTGCCGGCGGAGGCCCCGATGAGGGCCAC
CGACAACAGCAGCAGCAGCCTCCGATGCAGCAGACACCGGAGAAGAAGGC
GGAGATGAACATTGACCCCGTGAGCAGCACGCCGTACTTGGAGGGCAGCG
CCATTCCCCCAGGGTGTGTGCAACGTCGACCGCAGGCTGCGCGAGGGACA
GCGAGAGGGAGAGGGCGAGCGGTGTCCACGTGCGTCGGGGGGAGGAAAAG
CGGCGGCGCGAGATGACGCGAATGTCGCTGCGCCGGGCGCTGTCTTTGCG
AGTCGGCGGCGGCGGCGGGGCAGCAGCCTCACGGAACACCGAAGGTTACC
AGCAGAACCCCCCACAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAA
CCTCTCACGCCGGGGCAGGCTGCCGGCGGAGGCCCCGATGAGGGCCACCG
ACAACAGCAGCAGCAGCCTCCGATGCAGCAGACACCGGAGAAGAAGGCGG
AGATGAACATTGACCCCGTGAGCAGCACGCCGTACTTGGAGGGCAGGGGC
GAGGACCTGGACATGCCGCCCCAGCTCGCCAAGCTCGGGGAGAAGCTGGA
CCTCCGGAGAGCTAGGCGTGTGCAGTCAAGGGGCGAGGACCTGGACATGC
CGCCCCAGCTCGCCAAGCTCGGGGAGAAGCTGGACCTCCGGAGAGCTAGG
CGTGTGCAGTCAAGCCGAGTGCGGCCAGAATCGATCAGGCTATTCGAGGC
GTCGGCATCGCATTCGCACCACGGTGTTACGTCGAGGGGGGTGTCGGGCG
CGCTGGAGGCAGCGATTGCGGGGAGCACTGGGAGGGGGGTCGGGCCGAGT
GCGGCCAGAATCGATCAGGCTATTCGAGGCGTCGGCATCGCATTCGCACC
ACGGTGTTACGTCGAGGGGGGTGTCGGGCGCGCTGGAGGCAGCGATTGCG
GGGAGCACTGGGAGGGGGGTCGGG
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