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Homology
BLAST of mRNA_E-fasciculatus_F_contig13179.2398.1 vs. uniprot
Match: D8LM70_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM70_ECTSI) HSP 1 Score: 348 bits (892), Expect = 9.620e-117 Identity = 176/196 (89.80%), Postives = 182/196 (92.86%), Query Frame = 1
Query: 1 LQHRPIANTADIMALSQEEVDSRSRFFNEVPSTWEQSYGAANLPEVERETSETSGRRSEGVTEARMSVYRSARQIPRYRFFGDPPLKEQDEAYFAEREDPMRRIKFEDAAELDRLAVVSGENSQDKNLFVYRDSRTGRVAPPHRAGSPGTVRAEMREKQLPVCGSCEGSGLQVXXXXXXTGINPAATGLEDLVCPR 588
L HRPIA+TADIMALSQEEVDSRSRFFNEVPSTWEQ+YG NLPEVERE SET GR+SEGVTEARMS+YRSARQIPRYRFFGDPPLKEQDEAYFAEREDPMRRIKFEDAAELDRLAVVSGENSQDKNLFVYRDSRTGRVAPPH+AGSPGTVRAEMREKQLPVCGSCEG+GLQ TGIN AATGL DLVCPR
Sbjct: 256 LAHRPIASTADIMALSQEEVDSRSRFFNEVPSTWEQAYGPPNLPEVERERSETGGRKSEGVTEARMSLYRSARQIPRYRFFGDPPLKEQDEAYFAEREDPMRRIKFEDAAELDRLAVVSGENSQDKNLFVYRDSRTGRVAPPHKAGSPGTVRAEMREKQLPVCGSCEGTGLQDCQVCHGTGINAAATGLHDLVCPR 451
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 351.3 |
| Seed ortholog evalue | 3e-94 |
| Seed eggNOG ortholog | 2880.D8LM70 |
| EggNOG free text desc. | 2Fe-2S iron-sulfur cluster binding domain |
| EggNOG OGs | 2EYCC@1,2SZW3@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Beta-grasp domain |
| Ec32 ortholog | Ec-18_002710.2 |
| Exons | 4 |
| Model size | 591 |
| Cds size | 591 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13179.2398.1 >prot_E-fasciculatus_F_contig13179.2398.1 ID=prot_E-fasciculatus_F_contig13179.2398.1|Name=mRNA_E-fasciculatus_F_contig13179.2398.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=197bp
LQHRPIANTADIMALSQEEVDSRSRFFNEVPSTWEQSYGAANLPEVERET
SETSGRRSEGVTEARMSVYRSARQIPRYRFFGDPPLKEQDEAYFAEREDP
MRRIKFEDAAELDRLAVVSGENSQDKNLFVYRDSRTGRVAPPHRAGSPGT
VRAEMREKQLPVCGSCEGSGLQVCQLCHGTGINPAATGLEDLVCPR* back to topmRNA from alignment at E-fasciculatus_F_contig13179:357..3281+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig13179.2398.1 ID=mRNA_E-fasciculatus_F_contig13179.2398.1|Name=mRNA_E-fasciculatus_F_contig13179.2398.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2925bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13179:357..3281+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGCAGCACCGCCCGATTGCGAACACGGCGGACATCATGGCGCTGTCTCA
GGAGGAGGTGGACTCCAGGTCAAGGTTCTTCAACGAAGTCCCCAGTACCT
GGGAGCAGGTATGCATACGATGAAGATCAAAGTTTTTACGCCCCCGAGAT
CACACGCGAGCGTGTAGATACGCTATACCTTGTGGTTTTTTCCTCCGTGC
GTATGCGTACCACAGGTGTTCCTTAGCGTTGAGACCACGCGTCGTCGAGA
GGACGGAGGTACATCGTTGTTTTCCACAGGACCGATCACCGATGGCCAAT
CGTTCCTTCATAGGGGGGCAGGGGGCAATGACGTTTGACATTCTTGCCGT
TGCTTGCGTTCGTGGGGCCAGGAAAGGCGGGACGATTCCTGACCACGGGA
AGGAAATCGAGGGATATTTACTATTTATACTATACTATATACTACAGAGT
ACCGGAATTGCGGCGACACGCTACGATAGAAACAGGTCCATCATTACCGC
GGAAGAGGACGAGCTTGCCCCCGCGCCTCACCGGTACACAGCAAAACGCG
ATCCCTACCATTCACGCAACGTGTGATTCGTCTCCCAGTAAAAAAAGAAC
ACACGAGTCTATGAGACGTAAAGCCTCCAGGCTCGCGCACGATCTACGAG
ACAGCAGTGGTGAGGCGACATTCACAAGTTGGATTATTCATGTTCCGGAA
TAGTCCCGCGTGTTGATGTTGATCTTTGCCGCCCCAACACGCCTTCTTTT
TTTTTCTTTTTTCGCATCGAAAAGGCGTACAGCCCCCATCAACCTCGGAC
TTTTACACAAATTCCGGAATTTCCCCGCTTGTTGATGTGTTTCGCGCCCC
TCCCGCACTTTTTTTTTTTCTTCTTTTTTTTTGCGTCGAAAAGTCGTACG
GAGCCGCCAACCTCCCGGAGGTAGAGCGTGAGACGTCCGAGACTAGCGGG
AGGCGATCCGAGGGCGTCACCGAAGCGCGCATGTCCGTGTACCGGTCGGC
GAGACAGATCCCGCGGTACCGCTTCTTCGGCGACCCCCCTCTCAAGGAGC
AGGACGAGGCCTACTTCGCCGAGCGTAAGTTTTTTTTTATTTTTGTCATA
CACGATGGTAGTGTAAACGATCACAGAAAAACTCCTTCCGGTTTTATTTT
TTTTTGTTTTTTTGTCGATATTTGTTATTACTTGTGTTTGCTTTCTCTTC
GCGGAAAATGAGACTAGAGTGATTTACCCTCTGTGGTTGGTGGAAGAATC
AAACGTTACTATAGCCCTTGCCAAGGGTGTAGGATGTATTTGTCTTCGGG
CAGTGAGGTCTCTGTCTCATCTTTGCATACCTTTCCCCTGTGTTGCTTTC
TTTTTGGTTTGCTGAACTCTCTCAGAACCTTGTGCGTGACTTTGTTGTTG
GGTACAGCGATGTATGCTTTGCGTGTTCATATGCCACGCCGCTCACTATT
TTTTGTTGCATTTGTGTATTTTTGGCTCACTTCGCAAAAGCTCGAATGAC
TCCTTCCCGCCCCCCTCCAAGGCCAATTGAGTCCAGCCCTTCCGTTGCAC
ATGAGAATGCTTCACCAAACATGGCCCTCCGTTCCACCACCGGATTCACT
GACTGCAACAGTATCACTGCATGCATAGCATACGTGTAACGCTTGTCATG
TCATGTTTCTGCTGTGGCAACTCGATACCCATCTACCCCGTTGGCCCATC
CCATTTCGTACTCGCGCCGCGTTCACCATTTGATCTGAAACATCGCCCTC
ACCTTCTATATACCCACCAACGACTACACCACCACCACCACCACCAACAC
CAGGGGAAGACCCGATGCGGCGGATCAAGTTCGAGGATGCGGCGGAACTC
GACCGTCTTGCCGTCGTGTCCGGAGAGAACTCCCAGGACAAGAACCTCTT
CGTCTACCGCGACTCTAGGACGGGACGGGTCGCGCCGCCGCACAGGGCGG
GCTCCCCGGGCACCGTACGCGCGGAGATGAGGGAGAAGCAGGTTCGGGGT
TGGAATTTTCTTGGAATTTTCTTGGAATTTTCTTGGAATTTTCGTTTTCT
TCTGCGTCTTGTGTGTGCCTGAGTGACGACCGAGTGGTGGCTGAGACCAG
ACACGAGAGACGGGGCGGTCCTCTCCCTGCCCCCCAGCGGCCCCTACGAA
GAAAAAGAGGTAAAAAGAAACATAATGCACCTGAATTAAAGTAGCTAGTA
ATTCGGAGTGTTTTGAAAATCGATCAGCTCAAATCAAGCGTTTTTGGTCA
CCTTGCTCAGGATGAACTCAACTCGAACACACGTGCGCTTGTGAATTGCG
GTGTTGCCCACTGTTGGAAGAATAAATGCACGTCCCTCCTCTCCTCGACA
ATGGTGTATAAGTGTAAGTAGCAGCGATTCTTCTTCGTACACATGCATAC
TGTACGCTGCAGCGTGTGTTTGCCGTGGGGCGGTGTCTTTGTCGGCTCCG
CTACAATATGCTTGCACCCGTGTTGTATTTTGCTGCAGGAGGGNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCCCCCCCCTTCTTGTTTTCGGGGCGTATA
TACGGGTTACTCCTGCGCTTGTGATATTGTACCCGTTTCAGTTTTTCAGC
GTGTGGCTCCTTCGTGTTGGTGTGAAGGCATCGGGTAAAGGAGGAGTTGA
GGTGAGGTGATCACCCCTCCCCCCCACATCGTGAGGTCTATGGTCTAATG
ACTACGGCATGCATGATACTGAGTACCCCCCCCCCACACACACACATGGT
GATGTCTCTCTTGACGTCTACTCTGTCCCGCTACTGTACTGCTGTTGTGT
TTCCGTTTCAGCTCCCGGTGTGTGGCTCGTGCGAAGGCTCCGGGCTACAG
GTCTGTCAGCTGTGCCACGGCACCGGCATCAACCCCGCTGCCACTGGCCT
CGAAGATCTCGTGTGCCCGAGGTGA back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig13179:357..3281+ >mRNA_E-fasciculatus_F_contig13179.2398.1 ID=mRNA_E-fasciculatus_F_contig13179.2398.1|Name=mRNA_E-fasciculatus_F_contig13179.2398.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1182bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13179:357..3281+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGCAGCACCGCCCGATTGCGAACACGGCGGACATCATGGCGCTGTCTCA
GGAGGAGGTGGACTCCAGGTCAAGGTTCTTCAACGAAGTCCCCAGTACCT
GGGAGCAGCTGCAGCACCGCCCGATTGCGAACACGGCGGACATCATGGCG
CTGTCTCAGGAGGAGGTGGACTCCAGGTCAAGGTTCTTCAACGAAGTCCC
CAGTACCTGGGAGCAGTCGTACGGAGCCGCCAACCTCCCGGAGGTAGAGC
GTGAGACGTCCGAGACTAGCGGGAGGCGATCCGAGGGCGTCACCGAAGCG
CGCATGTCCGTGTACCGGTCGGCGAGACAGATCCCGCGGTACCGCTTCTT
CGGCGACCCCCCTCTCAAGGAGCAGGACGAGGCCTACTTCGCCGAGCTCG
TACGGAGCCGCCAACCTCCCGGAGGTAGAGCGTGAGACGTCCGAGACTAG
CGGGAGGCGATCCGAGGGCGTCACCGAAGCGCGCATGTCCGTGTACCGGT
CGGCGAGACAGATCCCGCGGTACCGCTTCTTCGGCGACCCCCCTCTCAAG
GAGCAGGACGAGGCCTACTTCGCCGAGCGGGAAGACCCGATGCGGCGGAT
CAAGTTCGAGGATGCGGCGGAACTCGACCGTCTTGCCGTCGTGTCCGGAG
AGAACTCCCAGGACAAGAACCTCTTCGTCTACCGCGACTCTAGGACGGGA
CGGGTCGCGCCGCCGCACAGGGCGGGCTCCCCGGGCACCGTACGCGCGGA
GATGAGGGAGAAGCAGGGGAAGACCCGATGCGGCGGATCAAGTTCGAGGA
TGCGGCGGAACTCGACCGTCTTGCCGTCGTGTCCGGAGAGAACTCCCAGG
ACAAGAACCTCTTCGTCTACCGCGACTCTAGGACGGGACGGGTCGCGCCG
CCGCACAGGGCGGGCTCCCCGGGCACCGTACGCGCGGAGATGAGGGAGAA
GCAGCTCCCGGTGTGTGGCTCGTGCGAAGGCTCCGGGCTACAGGTCTGTC
AGCTGTGCCACGGCACCGGCATCAACCCCGCTGCCACTGGCCTCGAAGAT
CTCGTGTGCCCGAGGTGACTCCCGGTGTGTGGCTCGTGCGAAGGCTCCGG
GCTACAGGTCTGTCAGCTGTGCCACGGCACCGGCATCAACCCCGCTGCCA
CTGGCCTCGAAGATCTCGTGTGCCCGAGGTGA back to top
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