mRNA_E-fasciculatus_F_contig1316.2384.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1316.2384.1 vs. uniprot
Match: A0A6H5KI81_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI81_9PHAE) HSP 1 Score: 204 bits (518), Expect = 6.180e-59 Identity = 93/96 (96.88%), Postives = 95/96 (98.96%), Query Frame = 3
Query: 3 VDCAGHYGHIKLELPVFHIGYFKHTLTMLQCICKTCSRVLLHDASRVKFLKRMRNPRGMGALERGNLHKKIVTECKKATGCFHESCYAVNGTVKKV 290
VDCAGHYGHIKLELPVFHIGYFKHTLTMLQCICKTCSRVLLHDASRVK+LKRMRNPRGMGALERGNLHKKIVTECKK+T CFHESCYAVNGTVKKV
Sbjct: 121 VDCAGHYGHIKLELPVFHIGYFKHTLTMLQCICKTCSRVLLHDASRVKYLKRMRNPRGMGALERGNLHKKIVTECKKSTSCFHESCYAVNGTVKKV 216
BLAST of mRNA_E-fasciculatus_F_contig1316.2384.1 vs. uniprot
Match: D7FU80_ECTSI (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU80_ECTSI) HSP 1 Score: 204 bits (518), Expect = 7.150e-59 Identity = 93/96 (96.88%), Postives = 95/96 (98.96%), Query Frame = 3
Query: 3 VDCAGHYGHIKLELPVFHIGYFKHTLTMLQCICKTCSRVLLHDASRVKFLKRMRNPRGMGALERGNLHKKIVTECKKATGCFHESCYAVNGTVKKV 290
VDCAGHYGHIKLELPVFHIGYFKHTLTMLQCICKTCSRVLLHDASRVK+LKRMRNPRGMGALERGNLHKKIVTECKK+T CFHESCYAVNGTVKKV
Sbjct: 123 VDCAGHYGHIKLELPVFHIGYFKHTLTMLQCICKTCSRVLLHDASRVKYLKRMRNPRGMGALERGNLHKKIVTECKKSTSCFHESCYAVNGTVKKV 218
BLAST of mRNA_E-fasciculatus_F_contig1316.2384.1 vs. uniprot
Match: A0A836CEF0_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEF0_9STRA) HSP 1 Score: 129 bits (325), Expect = 7.470e-33 Identity = 60/96 (62.50%), Postives = 75/96 (78.12%), Query Frame = 3
Query: 3 VDCAGHYGHIKLELPVFHIGYFKHTLTMLQCICKTCSRVLLHDASRVKFLKRMRNPRGMGALERGNLHKKIVTECKKATGCFHESCYAVNGTVKKV 290
VDCAGH+G IKLELP FHIGYFKHTLT+LQCICKTC VLL +++ L+++R+PR + AL R + KK+VT+CKKA C + +C A NGTVKKV
Sbjct: 93 VDCAGHFGFIKLELPCFHIGYFKHTLTILQCICKTCGNVLLDQKTKLDMLRKIRSPR-LDALGRAAVFKKVVTKCKKAVKCTNPACGAYNGTVKKV 187
BLAST of mRNA_E-fasciculatus_F_contig1316.2384.1 vs. uniprot
Match: A0A7S2UKU7_9STRA (DNA-directed RNA polymerase subunit (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UKU7_9STRA) HSP 1 Score: 128 bits (322), Expect = 1.490e-32 Identity = 62/96 (64.58%), Postives = 71/96 (73.96%), Query Frame = 3
Query: 3 VDCAGHYGHIKLELPVFHIGYFKHTLTMLQCICKTCSRVLLHDASRVKFLKRMRNPRGMGALERGNLHKKIVTECKKATGCFHESCYAVNGTVKKV 290
VDCAGHYG+I+L LPVFHIG+ KHTLT+LQCICKTCSRVLL D R L+RMRNPR L + L KK+ CKKA C H C+A NGTVKK+
Sbjct: 99 VDCAGHYGYIRLALPVFHIGFIKHTLTLLQCICKTCSRVLLGDVDRQNHLRRMRNPR-TDVLAKQALQKKVAETCKKARACPH--CHAANGTVKKL 191
BLAST of mRNA_E-fasciculatus_F_contig1316.2384.1 vs. uniprot
Match: A0A7S3PXX2_9STRA (DNA-directed RNA polymerase subunit n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PXX2_9STRA) HSP 1 Score: 124 bits (312), Expect = 4.240e-31 Identity = 54/95 (56.84%), Postives = 73/95 (76.84%), Query Frame = 3
Query: 6 DCAGHYGHIKLELPVFHIGYFKHTLTMLQCICKTCSRVLLHDASRVKFLKRMRNPRGMGALERGNLHKKIVTECKKATGCFHESCYAVNGTVKKV 290
DCAGH+G+I+L LPV+HIG+ KHTL +LQCICKTCSR+LL D+ R+ FLKRMR +GAL + + KK++ +CKK+ C + C+ NGTVKK+
Sbjct: 94 DCAGHFGYIRLALPVYHIGFMKHTLNLLQCICKTCSRILLPDSERLAFLKRMRKAAAVGALAKAAIFKKVIDKCKKSKHCPY--CHNANGTVKKI 186
BLAST of mRNA_E-fasciculatus_F_contig1316.2384.1 vs. uniprot
Match: A0A7S2BSJ8_9STRA (DNA-directed RNA polymerase subunit (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSJ8_9STRA) HSP 1 Score: 124 bits (310), Expect = 6.570e-31 Identity = 57/96 (59.38%), Postives = 71/96 (73.96%), Query Frame = 3
Query: 3 VDCAGHYGHIKLELPVFHIGYFKHTLTMLQCICKTCSRVLLHDASRVKFLKRMRNPRGMGALERGNLHKKIVTECKKATGCFHESCYAVNGTVKKV 290
+DCAGH+GH++LELP+FHIG+FKHTLT+ QCICK CS +LL A R KFL RMR P + AL + + KKI+ +CKKA C C A NGTVKK+
Sbjct: 83 IDCAGHFGHVQLELPLFHIGFFKHTLTVCQCICKRCSSILLSAADRTKFLNRMRRPM-LDALTKAAIWKKIIIQCKKAHSC--PRCLAFNGTVKKI 175
BLAST of mRNA_E-fasciculatus_F_contig1316.2384.1 vs. uniprot
Match: A0A7S4NGV3_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NGV3_9STRA) HSP 1 Score: 124 bits (310), Expect = 7.890e-31 Identity = 59/95 (62.11%), Postives = 70/95 (73.68%), Query Frame = 3
Query: 6 DCAGHYGHIKLELPVFHIGYFKHTLTMLQCICKTCSRVLLHDASRVKFLKRMRNPRGMGALERGNLHKKIVTECKKATGCFHESCYAVNGTVKKV 290
DCAGHYG+I+L LPVFHIG+ KHT +LQCICKTCSRVLL DA R L+RMRNPR L + KK++ +CKKA C H C+A NGTVKK+
Sbjct: 101 DCAGHYGYIRLALPVFHIGFIKHTTNILQCICKTCSRVLLPDADRHSVLRRMRNPR-TDVLAKAASFKKVIDKCKKARACPH--CHASNGTVKKI 192
BLAST of mRNA_E-fasciculatus_F_contig1316.2384.1 vs. uniprot
Match: A0A7S1ZKV2_9STRA (DNA-directed RNA polymerase subunit n=5 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZKV2_9STRA) HSP 1 Score: 123 bits (309), Expect = 1.080e-30 Identity = 57/95 (60.00%), Postives = 69/95 (72.63%), Query Frame = 3
Query: 6 DCAGHYGHIKLELPVFHIGYFKHTLTMLQCICKTCSRVLLHDASRVKFLKRMRNPRGMGALERGNLHKKIVTECKKATGCFHESCYAVNGTVKKV 290
DCAGHYG+I+L LP FHIGY KHTL +LQCICKTCSRVLL D R +LKRMR+PR L + KK++ +CKK+ C H C+ NGTVKK+
Sbjct: 93 DCAGHYGYIRLALPCFHIGYIKHTLNILQCICKTCSRVLLSDVDRFTYLKRMRSPR-TDVLAKAATFKKVIDKCKKSKACPH--CHEANGTVKKI 184
BLAST of mRNA_E-fasciculatus_F_contig1316.2384.1 vs. uniprot
Match: W7TBK8_9STRA (DNA-directed RNA polymerase subunit n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBK8_9STRA) HSP 1 Score: 121 bits (304), Expect = 5.100e-30 Identity = 55/95 (57.89%), Postives = 71/95 (74.74%), Query Frame = 3
Query: 6 DCAGHYGHIKLELPVFHIGYFKHTLTMLQCICKTCSRVLLHDASRVKFLKRMRNPRGMGALERGNLHKKIVTECKKATGCFHESCYAVNGTVKKV 290
DCAGH+GH+KL LPVFHIG+FKH T+L CICKTC RVLL +A R FL++MR+P AL + + K++V +CKKA+ CF C AVNG +KK+
Sbjct: 76 DCAGHFGHVKLALPVFHIGFFKHCQTLLACICKTCGRVLLPEAERRSFLRQMRSP-SADALRKAGIFKRVVEKCKKASYCFE--CKAVNGKIKKI 167
BLAST of mRNA_E-fasciculatus_F_contig1316.2384.1 vs. uniprot
Match: B8C4M1_THAPS (DNA-directed RNA polymerase subunit n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4M1_THAPS) HSP 1 Score: 121 bits (303), Expect = 6.940e-30 Identity = 58/95 (61.05%), Postives = 72/95 (75.79%), Query Frame = 3
Query: 6 DCAGHYGHIKLELPVFHIGYFKHTLTMLQCICKTCSRVLLHDASRVKFLKRMRNPRGMGALERGNLHKKIVTECKKATGCFHESCYAVNGTVKKV 290
DCAGH+G+I+L LPVFHIGY KHTL +LQCICK+CSRVLL DA R LK+MRNPR L + ++ KK++ +CKKA C + C+ NGTVKKV
Sbjct: 100 DCAGHFGYIRLALPVFHIGYLKHTLNLLQCICKSCSRVLLTDAERKMLLKKMRNPR-TDVLGKASVFKKVLDKCKKAHQCPY--CHKPNGTVKKV 191 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1316.2384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1316.2384.1 >prot_E-fasciculatus_F_contig1316.2384.1 ID=prot_E-fasciculatus_F_contig1316.2384.1|Name=mRNA_E-fasciculatus_F_contig1316.2384.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=94bp WLTAPAITATSSSSCPCSTSGTSSTPSPCFSASARRAAECCCTTRLGSSSback to top mRNA from alignment at E-fasciculatus_F_contig1316:5303..6089- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1316.2384.1 ID=mRNA_E-fasciculatus_F_contig1316.2384.1|Name=mRNA_E-fasciculatus_F_contig1316.2384.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=787bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1316:5303..6089- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1316:5303..6089- >mRNA_E-fasciculatus_F_contig1316.2384.1 ID=mRNA_E-fasciculatus_F_contig1316.2384.1|Name=mRNA_E-fasciculatus_F_contig1316.2384.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=564bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1316:5303..6089- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |