mRNA_E-fasciculatus_F_contig1316.2384.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1316.2384.1
Unique NamemRNA_E-fasciculatus_F_contig1316.2384.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1316.2384.1 vs. uniprot
Match: A0A6H5KI81_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI81_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 6.180e-59
Identity = 93/96 (96.88%), Postives = 95/96 (98.96%), Query Frame = 3
Query:    3 VDCAGHYGHIKLELPVFHIGYFKHTLTMLQCICKTCSRVLLHDASRVKFLKRMRNPRGMGALERGNLHKKIVTECKKATGCFHESCYAVNGTVKKV 290
            VDCAGHYGHIKLELPVFHIGYFKHTLTMLQCICKTCSRVLLHDASRVK+LKRMRNPRGMGALERGNLHKKIVTECKK+T CFHESCYAVNGTVKKV
Sbjct:  121 VDCAGHYGHIKLELPVFHIGYFKHTLTMLQCICKTCSRVLLHDASRVKYLKRMRNPRGMGALERGNLHKKIVTECKKSTSCFHESCYAVNGTVKKV 216          
BLAST of mRNA_E-fasciculatus_F_contig1316.2384.1 vs. uniprot
Match: D7FU80_ECTSI (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU80_ECTSI)

HSP 1 Score: 204 bits (518), Expect = 7.150e-59
Identity = 93/96 (96.88%), Postives = 95/96 (98.96%), Query Frame = 3
Query:    3 VDCAGHYGHIKLELPVFHIGYFKHTLTMLQCICKTCSRVLLHDASRVKFLKRMRNPRGMGALERGNLHKKIVTECKKATGCFHESCYAVNGTVKKV 290
            VDCAGHYGHIKLELPVFHIGYFKHTLTMLQCICKTCSRVLLHDASRVK+LKRMRNPRGMGALERGNLHKKIVTECKK+T CFHESCYAVNGTVKKV
Sbjct:  123 VDCAGHYGHIKLELPVFHIGYFKHTLTMLQCICKTCSRVLLHDASRVKYLKRMRNPRGMGALERGNLHKKIVTECKKSTSCFHESCYAVNGTVKKV 218          
BLAST of mRNA_E-fasciculatus_F_contig1316.2384.1 vs. uniprot
Match: A0A836CEF0_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEF0_9STRA)

HSP 1 Score: 129 bits (325), Expect = 7.470e-33
Identity = 60/96 (62.50%), Postives = 75/96 (78.12%), Query Frame = 3
Query:    3 VDCAGHYGHIKLELPVFHIGYFKHTLTMLQCICKTCSRVLLHDASRVKFLKRMRNPRGMGALERGNLHKKIVTECKKATGCFHESCYAVNGTVKKV 290
            VDCAGH+G IKLELP FHIGYFKHTLT+LQCICKTC  VLL   +++  L+++R+PR + AL R  + KK+VT+CKKA  C + +C A NGTVKKV
Sbjct:   93 VDCAGHFGFIKLELPCFHIGYFKHTLTILQCICKTCGNVLLDQKTKLDMLRKIRSPR-LDALGRAAVFKKVVTKCKKAVKCTNPACGAYNGTVKKV 187          
BLAST of mRNA_E-fasciculatus_F_contig1316.2384.1 vs. uniprot
Match: A0A7S2UKU7_9STRA (DNA-directed RNA polymerase subunit (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UKU7_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.490e-32
Identity = 62/96 (64.58%), Postives = 71/96 (73.96%), Query Frame = 3
Query:    3 VDCAGHYGHIKLELPVFHIGYFKHTLTMLQCICKTCSRVLLHDASRVKFLKRMRNPRGMGALERGNLHKKIVTECKKATGCFHESCYAVNGTVKKV 290
            VDCAGHYG+I+L LPVFHIG+ KHTLT+LQCICKTCSRVLL D  R   L+RMRNPR    L +  L KK+   CKKA  C H  C+A NGTVKK+
Sbjct:   99 VDCAGHYGYIRLALPVFHIGFIKHTLTLLQCICKTCSRVLLGDVDRQNHLRRMRNPR-TDVLAKQALQKKVAETCKKARACPH--CHAANGTVKKL 191          
BLAST of mRNA_E-fasciculatus_F_contig1316.2384.1 vs. uniprot
Match: A0A7S3PXX2_9STRA (DNA-directed RNA polymerase subunit n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PXX2_9STRA)

HSP 1 Score: 124 bits (312), Expect = 4.240e-31
Identity = 54/95 (56.84%), Postives = 73/95 (76.84%), Query Frame = 3
Query:    6 DCAGHYGHIKLELPVFHIGYFKHTLTMLQCICKTCSRVLLHDASRVKFLKRMRNPRGMGALERGNLHKKIVTECKKATGCFHESCYAVNGTVKKV 290
            DCAGH+G+I+L LPV+HIG+ KHTL +LQCICKTCSR+LL D+ R+ FLKRMR    +GAL +  + KK++ +CKK+  C +  C+  NGTVKK+
Sbjct:   94 DCAGHFGYIRLALPVYHIGFMKHTLNLLQCICKTCSRILLPDSERLAFLKRMRKAAAVGALAKAAIFKKVIDKCKKSKHCPY--CHNANGTVKKI 186          
BLAST of mRNA_E-fasciculatus_F_contig1316.2384.1 vs. uniprot
Match: A0A7S2BSJ8_9STRA (DNA-directed RNA polymerase subunit (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSJ8_9STRA)

HSP 1 Score: 124 bits (310), Expect = 6.570e-31
Identity = 57/96 (59.38%), Postives = 71/96 (73.96%), Query Frame = 3
Query:    3 VDCAGHYGHIKLELPVFHIGYFKHTLTMLQCICKTCSRVLLHDASRVKFLKRMRNPRGMGALERGNLHKKIVTECKKATGCFHESCYAVNGTVKKV 290
            +DCAGH+GH++LELP+FHIG+FKHTLT+ QCICK CS +LL  A R KFL RMR P  + AL +  + KKI+ +CKKA  C    C A NGTVKK+
Sbjct:   83 IDCAGHFGHVQLELPLFHIGFFKHTLTVCQCICKRCSSILLSAADRTKFLNRMRRPM-LDALTKAAIWKKIIIQCKKAHSC--PRCLAFNGTVKKI 175          
BLAST of mRNA_E-fasciculatus_F_contig1316.2384.1 vs. uniprot
Match: A0A7S4NGV3_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NGV3_9STRA)

HSP 1 Score: 124 bits (310), Expect = 7.890e-31
Identity = 59/95 (62.11%), Postives = 70/95 (73.68%), Query Frame = 3
Query:    6 DCAGHYGHIKLELPVFHIGYFKHTLTMLQCICKTCSRVLLHDASRVKFLKRMRNPRGMGALERGNLHKKIVTECKKATGCFHESCYAVNGTVKKV 290
            DCAGHYG+I+L LPVFHIG+ KHT  +LQCICKTCSRVLL DA R   L+RMRNPR    L +    KK++ +CKKA  C H  C+A NGTVKK+
Sbjct:  101 DCAGHYGYIRLALPVFHIGFIKHTTNILQCICKTCSRVLLPDADRHSVLRRMRNPR-TDVLAKAASFKKVIDKCKKARACPH--CHASNGTVKKI 192          
BLAST of mRNA_E-fasciculatus_F_contig1316.2384.1 vs. uniprot
Match: A0A7S1ZKV2_9STRA (DNA-directed RNA polymerase subunit n=5 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZKV2_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.080e-30
Identity = 57/95 (60.00%), Postives = 69/95 (72.63%), Query Frame = 3
Query:    6 DCAGHYGHIKLELPVFHIGYFKHTLTMLQCICKTCSRVLLHDASRVKFLKRMRNPRGMGALERGNLHKKIVTECKKATGCFHESCYAVNGTVKKV 290
            DCAGHYG+I+L LP FHIGY KHTL +LQCICKTCSRVLL D  R  +LKRMR+PR    L +    KK++ +CKK+  C H  C+  NGTVKK+
Sbjct:   93 DCAGHYGYIRLALPCFHIGYIKHTLNILQCICKTCSRVLLSDVDRFTYLKRMRSPR-TDVLAKAATFKKVIDKCKKSKACPH--CHEANGTVKKI 184          
BLAST of mRNA_E-fasciculatus_F_contig1316.2384.1 vs. uniprot
Match: W7TBK8_9STRA (DNA-directed RNA polymerase subunit n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBK8_9STRA)

HSP 1 Score: 121 bits (304), Expect = 5.100e-30
Identity = 55/95 (57.89%), Postives = 71/95 (74.74%), Query Frame = 3
Query:    6 DCAGHYGHIKLELPVFHIGYFKHTLTMLQCICKTCSRVLLHDASRVKFLKRMRNPRGMGALERGNLHKKIVTECKKATGCFHESCYAVNGTVKKV 290
            DCAGH+GH+KL LPVFHIG+FKH  T+L CICKTC RVLL +A R  FL++MR+P    AL +  + K++V +CKKA+ CF   C AVNG +KK+
Sbjct:   76 DCAGHFGHVKLALPVFHIGFFKHCQTLLACICKTCGRVLLPEAERRSFLRQMRSP-SADALRKAGIFKRVVEKCKKASYCFE--CKAVNGKIKKI 167          
BLAST of mRNA_E-fasciculatus_F_contig1316.2384.1 vs. uniprot
Match: B8C4M1_THAPS (DNA-directed RNA polymerase subunit n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4M1_THAPS)

HSP 1 Score: 121 bits (303), Expect = 6.940e-30
Identity = 58/95 (61.05%), Postives = 72/95 (75.79%), Query Frame = 3
Query:    6 DCAGHYGHIKLELPVFHIGYFKHTLTMLQCICKTCSRVLLHDASRVKFLKRMRNPRGMGALERGNLHKKIVTECKKATGCFHESCYAVNGTVKKV 290
            DCAGH+G+I+L LPVFHIGY KHTL +LQCICK+CSRVLL DA R   LK+MRNPR    L + ++ KK++ +CKKA  C +  C+  NGTVKKV
Sbjct:  100 DCAGHFGYIRLALPVFHIGYLKHTLNLLQCICKSCSRVLLTDAERKMLLKKMRNPR-TDVLGKASVFKKVLDKCKKAHQCPY--CHKPNGTVKKV 191          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1316.2384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KI81_9PHAE6.180e-5996.88DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
D7FU80_ECTSI7.150e-5996.88DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A836CEF0_9STRA7.470e-3362.50DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A7S2UKU7_9STRA1.490e-3264.58DNA-directed RNA polymerase subunit (Fragment) n=1... [more]
A0A7S3PXX2_9STRA4.240e-3156.84DNA-directed RNA polymerase subunit n=2 Tax=Chaeto... [more]
A0A7S2BSJ8_9STRA6.570e-3159.38DNA-directed RNA polymerase subunit (Fragment) n=1... [more]
A0A7S4NGV3_9STRA7.890e-3162.11DNA-directed RNA polymerase subunit n=1 Tax=Odonte... [more]
A0A7S1ZKV2_9STRA1.080e-3060.00DNA-directed RNA polymerase subunit n=5 Tax=Ditylu... [more]
W7TBK8_9STRA5.100e-3057.89DNA-directed RNA polymerase subunit n=3 Tax=Monodo... [more]
B8C4M1_THAPS6.940e-3061.05DNA-directed RNA polymerase subunit n=1 Tax=Thalas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1316contigE-fasciculatus_F_contig1316:5303..6089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size282
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1316.2384.1prot_E-fasciculatus_F_contig1316.2384.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1316 5317..6089 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927819.4621322-UTR-E-fasciculatus_F_contig1316:5302..53161622927819.4621322-UTR-E-fasciculatus_F_contig1316:5302..5316Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1316 5303..5316 -
1695995708.2685976-UTR-E-fasciculatus_F_contig1316:5302..53161695995708.2685976-UTR-E-fasciculatus_F_contig1316:5302..5316Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1316 5303..5316 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927819.47524-CDS-E-fasciculatus_F_contig1316:5316..55061622927819.47524-CDS-E-fasciculatus_F_contig1316:5316..5506Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1316 5317..5506 -
1695995708.282928-CDS-E-fasciculatus_F_contig1316:5316..55061695995708.282928-CDS-E-fasciculatus_F_contig1316:5316..5506Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1316 5317..5506 -
1622927819.4947996-CDS-E-fasciculatus_F_contig1316:5997..60891622927819.4947996-CDS-E-fasciculatus_F_contig1316:5997..6089Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1316 5998..6089 -
1695995708.307345-CDS-E-fasciculatus_F_contig1316:5997..60891695995708.307345-CDS-E-fasciculatus_F_contig1316:5997..6089Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1316 5998..6089 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1316.2384.1

>prot_E-fasciculatus_F_contig1316.2384.1 ID=prot_E-fasciculatus_F_contig1316.2384.1|Name=mRNA_E-fasciculatus_F_contig1316.2384.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=94bp
WLTAPAITATSSSSCPCSTSGTSSTPSPCFSASARRAAECCCTTRLGSSS
SSACGTRGEWVRWRGGTFTRRSSPSARRRPVASTSLATPSTEP*
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mRNA from alignment at E-fasciculatus_F_contig1316:5303..6089-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1316.2384.1 ID=mRNA_E-fasciculatus_F_contig1316.2384.1|Name=mRNA_E-fasciculatus_F_contig1316.2384.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=787bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1316:5303..6089- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGGTTGACTGCGCCGGCCATTACGGCCACATCAAGCTCGAGTTGCCCGTG TTCCACATCGGGTACTTCAAGCACACCCTCACCATGCTTCAGGTTTGCGC GGATATAGTCGAAAAGTTGCTTTTTACTTGGCCTCTTGTAGTTGCTAAAT AATCTTGTTACGCTTTTTTAAGGAGTTGCGCATTCTCTAGCCCATGCGCT TGAAAAGCGATTCGTGGATAATTCGGAGTATTTAAGGAGTTTGCGCACTC TTTCGTGCATGCGCTGCTTGTGTAGGTCTCCTGCCCAGTTGGTTCCTTCG GGTAGATATATCCCGGTCTGTTTGGTGGTGTTGTCGTCTTTCCGTCCCGC CCTTGGTGTATCTGCATGACGTGGATGAACCCGGCCGCTACAGTACTGCT GCTGCGCGACACTCCGTCAAATCGACGTTTCATCAAAAGATGCAAATGCT TGACACGTGTTTTGCGAGGAAGCCTTGGGGACTGCCACTGATGAATGTTC AAGCTTCGCAGGAGATATGGTCTGCTTCACCTCCGCCACGTTCCCGTGCC ATCTCGCCCTCCGCTCCCCGCCCCCTCCCGTAGTGCATCTGCAAGACGTG CAGCCGAGTGTTGCTGCACGACGCGTCTCGGGTCAAGTTCCTCAAGCGCA TGCGGAACCCGCGGGGAATGGGTGCGTTGGAGAGGGGGAACCTTCACAAG AAGATCGTCACCGAGTGCAAGAAGGCGACCGGTTGCTTCCACGAGTCTTG CTACGCCGTCAACGGAACCGTAAAAAAGGTACAGGCA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1316:5303..6089-

>mRNA_E-fasciculatus_F_contig1316.2384.1 ID=mRNA_E-fasciculatus_F_contig1316.2384.1|Name=mRNA_E-fasciculatus_F_contig1316.2384.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=564bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1316:5303..6089- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGGTTGACTGCGCCGGCCATTACGGCCACATCAAGCTCGAGTTGCCCGTG
TTCCACATCGGGTACTTCAAGCACACCCTCACCATGCTTCAGTGGTTGAC
TGCGCCGGCCATTACGGCCACATCAAGCTCGAGTTGCCCGTGTTCCACAT
CGGGTACTTCAAGCACACCCTCACCATGCTTCAGTGCATCTGCAAGACGT
GCAGCCGAGTGTTGCTGCACGACGCGTCTCGGGTCAAGTTCCTCAAGCGC
ATGCGGAACCCGCGGGGAATGGGTGCGTTGGAGAGGGGGAACCTTCACAA
GAAGATCGTCACCGAGTGCAAGAAGGCGACCGGTTGCTTCCACGAGTCTT
GCTACGCCGTCAACGGAACCGTAATGCATCTGCAAGACGTGCAGCCGAGT
GTTGCTGCACGACGCGTCTCGGGTCAAGTTCCTCAAGCGCATGCGGAACC
CGCGGGGAATGGGTGCGTTGGAGAGGGGGAACCTTCACAAGAAGATCGTC
ACCGAGTGCAAGAAGGCGACCGGTTGCTTCCACGAGTCTTGCTACGCCGT
CAACGGAACCGTAA
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