mRNA_E-fasciculatus_F_contig13150.2383.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13150.2383.1
Unique NamemRNA_E-fasciculatus_F_contig13150.2383.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13150.2383.1 vs. uniprot
Match: D8LL94_ECTSI (Kinesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL94_ECTSI)

HSP 1 Score: 285 bits (730), Expect = 1.930e-85
Identity = 210/307 (68.40%), Postives = 221/307 (71.99%), Query Frame = 1 
Query:  310 QDGGEIAQSRRKAEAKIQQREGEGNDEQVPKSVGSDSDLEEIRTAAEGAGKSPARAEASPSSWVSSSCEVENGGG-EGTREQQPELRAVLARLQGLENTWVARVKQFEKLLKLKDLRIESLTLLHKHGPLSSGRPAGLGSGS--GSRHRRGFDTHHQVAEEEGEEAAPAKSNGAATPSGKQGGTPXXXXXXXXXXRSSPREXXXXXXXXXXXXRTPRGGEAEPEEKAENRGGG-----ERAEEGAAKRSGTCGKGLALPPSERKHGGALASAAAAVAFPTAPPPSPMIPREAHRSFALDGADTDNEY 1206
            Q+GGE AQ+ +KA+AK QQR GEGND Q  +SVGSDSDLEEIRTAAEG GKSPARA AS SSW+  SCE ENGG  EGTREQQPELRAVLARLQGLEN+WVARVKQFEKLL LKDLRIESLTLLHKHGPLSSGRPAG GSGS  G RHRRGFD H QVAE                         XXXXXXXXXX      XXXXXXXXXXXX                         ERAEEGA KR  T GKG A PPSERKHGGALA+AAA VAFPTAPPPSPMIP+EA RSFALDGAD+DN+Y
Sbjct:  489 QEGGEFAQANKKAQAKTQQRGGEGNDGQGSRSVGSDSDLEEIRTAAEGGGKSPARAGASSSSWMPPSCEGENGGEREGTREQQPELRAVLARLQGLENSWVARVKQFEKLLALKDLRIESLTLLHKHGPLSSGRPAGAGSGSVSGGRHRRGFDNHRQVAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERAEEGARKRGSTRGKGPAFPPSERKHGGALATAAA-VAFPTAPPPSPMIPQEARRSFALDGADSDNDY 794
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BLAST of mRNA_E-fasciculatus_F_contig13150.2383.1 vs. uniprot
Match: A0A6H5KQA5_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQA5_9PHAE)

HSP 1 Score: 282 bits (722), Expect = 1.080e-81
Identity = 280/416 (67.31%), Postives = 296/416 (71.15%), Query Frame = 1 
Query:    1 GVRSCWTRRRSRSGGRXXXXXXXXXXXXXGTLPRRRPVVSSGGSGQDGEGGTENTKPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRQDGGEIAQSRRKAEAKIQQREGEGNDEQVPKSVGSDSDLEEIRTAAEGAGKSPARAEASPSSWVSSSCEVENGGG-EGTREQQPELRAVLARLQGLENTWVARVKQFEKLLKLKDLRIESLTLLHKHGPLSSGRPAGLGSGSGSRHRRGFDTHHQVAEEEGEEAAPAKSNGAATPSGKQGGTPXXXXXXXXXXRSSPREXXXXXXXXXXXXRTPRGGEAEPEEKAENR-------------GGGERAEEGAAKRSGTCGKGLALPPSERKHGGALASAAAAVAFPTAPPPSPMIPREAHRSFALDGADTDNEY 1206
            GVRSCW RRRSRSGG XXXXXXXXXXXX   LPRRRP VSSGGSG DGEGGTE+TKP   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX X RQ+GGE AQ+ RKA+AK QQR GEGND QV KS+GSDSDLEEIR AAEG GKSPAR +AS SSW+SSSC+VENGG  EGTR+QQPEL AVLARLQGLENTWVARVKQFE+LL LKDLRIESLTLLHKHGPLSSGRPAG  S SG                                        XXXXXXXXXX      XXXXXXXXXXXX                              G GE A       S T G+G A PPS+RKHGGALA+AAA VAFPTAPPPSPMIP+EA RSFALDGAD+DN+Y
Sbjct:  899 GVRSCWARRRSRSGGXXXXXXXXXXXXXP--LPRRRPAVSSGGSGHDGEGGTESTKP--LXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQXGRQEGGEFAQANRKAQAKAQQRGGEGNDGQVSKSIGSDSDLEEIRMAAEGGGKSPARVKASSSSWMSSSCKVENGGEKEGTRKQQPELLAVLARLQGLENTWVARVKQFEQLLALKDLRIESLTLLHKHGPLSSGRPAGADSASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGXGEGAXXXXXXXSSTRGEGPASPPSQRKHGGALATAAA-VAFPTAPPPSPMIPQEARRSFALDGADSDNDY 1309
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13150.2383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LL94_ECTSI1.930e-8568.40Kinesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5KQA5_9PHAE1.080e-8167.31Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13150contigE-fasciculatus_F_contig13150:1886..3094 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score292.0
Seed ortholog evalue4.4e-76
Seed eggNOG ortholog2880.D8LL94
KEGG koko:K10396
KEGG Pathwayko04144,ko04728,map04144,map04728
GOsGO:0003674,GO:0003774,GO:0003777,GO:0003779,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005871,GO:0005875,GO:0006810,GO:0006928,GO:0006996,GO:0007010,GO:0007015,GO:0007017,GO:0007018,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0008574,GO:0009987,GO:0015630,GO:0015631,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0030029,GO:0030036,GO:0030705,GO:0032991,GO:0033036,GO:0042623,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0046907,GO:0048471,GO:0051015,GO:0051017,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061572,GO:0071840,GO:0097435,GO:1990939
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0240@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Exons1
Model size1209
Cds size1209
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927819.420008-CDS-E-fasciculatus_F_contig13150:1885..30941622927819.420008-CDS-E-fasciculatus_F_contig13150:1885..3094Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13150 1886..3094 -
1695995708.2488942-CDS-E-fasciculatus_F_contig13150:1885..30941695995708.2488942-CDS-E-fasciculatus_F_contig13150:1885..3094Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13150 1886..3094 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13150.2383.1prot_E-fasciculatus_F_contig13150.2383.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13150 1886..3094 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13150.2383.1

>prot_E-fasciculatus_F_contig13150.2383.1 ID=prot_E-fasciculatus_F_contig13150.2383.1|Name=mRNA_E-fasciculatus_F_contig13150.2383.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=403bp
GVRSCWTRRRSRSGGRSSWSRERDEDGDGGTLPRRRPVVSSGGSGQDGEG
GTENTKPPPPPPPSSNSPSSCSATDISAASAAAVAAAAAAAAASRGRGRE
RVRQDGGEIAQSRRKAEAKIQQREGEGNDEQVPKSVGSDSDLEEIRTAAE
GAGKSPARAEASPSSWVSSSCEVENGGGEGTREQQPELRAVLARLQGLEN
TWVARVKQFEKLLKLKDLRIESLTLLHKHGPLSSGRPAGLGSGSGSRHRR
GFDTHHQVAEEEGEEAAPAKSNGAATPSGKQGGTPGSAGGRRKKRRSSPR
ERRSPRRDRISPRRTPRGGEAEPEEKAENRGGGERAEEGAAKRSGTCGKG
LALPPSERKHGGALASAAAAVAFPTAPPPSPMIPREAHRSFALDGADTDN
EY*
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mRNA from alignment at E-fasciculatus_F_contig13150:1886..3094-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13150.2383.1 ID=mRNA_E-fasciculatus_F_contig13150.2383.1|Name=mRNA_E-fasciculatus_F_contig13150.2383.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1209bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13150:1886..3094- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCGTGCGCAGCTGCTGGACGCGCCGCAGGTCGCGGTCCGGAGGCCGCAG
CAGCTGGAGCCGGGAGAGGGACGAGGACGGCGACGGTGGTACTCTGCCGC
GCCGACGCCCGGTGGTCTCTTCCGGAGGCTCGGGGCAAGACGGAGAAGGA
GGGACGGAAAACACCAAGCCGCCGCCGCCGCCGCCGCCGTCGTCCAATTC
GCCGTCTTCTTGTAGTGCTACCGATATTTCGGCGGCGAGTGCGGCGGCGG
TAGCGGCGGCGGCGGCGGCGGCTGCTGCTTCTCGGGGACGGGGGCGGGAG
CGAGTGCGGCAGGACGGTGGTGAGATAGCCCAGTCGAGAAGGAAGGCTGA
GGCGAAAATACAGCAGCGGGAGGGAGAGGGAAACGACGAACAGGTGCCAA
AATCGGTCGGCTCCGACTCTGATCTGGAAGAGATCAGGACGGCGGCGGAG
GGGGCAGGGAAGTCGCCGGCACGGGCGGAGGCGTCGCCGTCGTCTTGGGT
GTCGTCGTCTTGCGAGGTGGAGAACGGAGGAGGAGAGGGCACGCGGGAGC
AACAACCGGAGCTGCGGGCGGTGCTGGCCAGGCTGCAGGGGCTGGAGAAC
ACGTGGGTCGCGAGGGTGAAGCAGTTCGAGAAGCTGCTGAAGCTCAAAGA
CCTCCGCATCGAGTCCCTGACGCTGCTCCACAAGCACGGGCCGCTGTCCT
CCGGCCGGCCAGCAGGCCTTGGTAGCGGTAGCGGTAGCCGCCACCGCCGC
GGTTTCGACACCCACCACCAGGTGGCAGAGGAGGAGGGGGAGGAAGCCGC
CCCCGCCAAGAGTAACGGCGCCGCCACCCCGTCGGGGAAGCAGGGCGGGA
CGCCCGGCAGCGCGGGCGGGAGGCGCAAGAAGAGACGGAGCTCCCCACGG
GAGAGGCGTTCGCCTAGGCGAGACCGGATCTCTCCGAGGCGGACACCGAG
AGGAGGGGAAGCGGAGCCAGAGGAAAAGGCTGAGAACCGCGGCGGCGGGG
AGAGGGCCGAAGAAGGCGCCGCGAAGCGCAGCGGCACGTGCGGGAAGGGT
CTCGCCCTCCCGCCGAGCGAGCGCAAGCACGGGGGCGCCTTGGCGTCAGC
GGCGGCGGCGGTGGCCTTCCCCACGGCGCCTCCGCCGTCGCCCATGATCC
CGCGCGAAGCCCACAGGTCGTTCGCGCTCGACGGCGCCGACACTGACAAC
GAATACTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13150:1886..3094-

>mRNA_E-fasciculatus_F_contig13150.2383.1 ID=mRNA_E-fasciculatus_F_contig13150.2383.1|Name=mRNA_E-fasciculatus_F_contig13150.2383.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2418bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13150:1886..3094- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCGTGCGCAGCTGCTGGACGCGCCGCAGGTCGCGGTCCGGAGGCCGCAG
CAGCTGGAGCCGGGAGAGGGACGAGGACGGCGACGGTGGTACTCTGCCGC
GCCGACGCCCGGTGGTCTCTTCCGGAGGCTCGGGGCAAGACGGAGAAGGA
GGGACGGAAAACACCAAGCCGCCGCCGCCGCCGCCGCCGTCGTCCAATTC
GCCGTCTTCTTGTAGTGCTACCGATATTTCGGCGGCGAGTGCGGCGGCGG
TAGCGGCGGCGGCGGCGGCGGCTGCTGCTTCTCGGGGACGGGGGCGGGAG
CGAGTGCGGCAGGACGGTGGTGAGATAGCCCAGTCGAGAAGGAAGGCTGA
GGCGAAAATACAGCAGCGGGAGGGAGAGGGAAACGACGAACAGGTGCCAA
AATCGGTCGGCTCCGACTCTGATCTGGAAGAGATCAGGACGGCGGCGGAG
GGGGCAGGGAAGTCGCCGGCACGGGCGGAGGCGTCGCCGTCGTCTTGGGT
GTCGTCGTCTTGCGAGGTGGAGAACGGAGGAGGAGAGGGCACGCGGGAGC
AACAACCGGAGCTGCGGGCGGTGCTGGCCAGGCTGCAGGGGCTGGAGAAC
ACGTGGGTCGCGAGGGTGAAGCAGTTCGAGAAGCTGCTGAAGCTCAAAGA
CCTCCGCATCGAGTCCCTGACGCTGCTCCACAAGCACGGGCCGCTGTCCT
CCGGCCGGCCAGCAGGCCTTGGTAGCGGTAGCGGTAGCCGCCACCGCCGC
GGTTTCGACACCCACCACCAGGTGGCAGAGGAGGAGGGGGAGGAAGCCGC
CCCCGCCAAGAGTAACGGCGCCGCCACCCCGTCGGGGAAGCAGGGCGGGA
CGCCCGGCAGCGCGGGCGGGAGGCGCAAGAAGAGACGGAGCTCCCCACGG
GAGAGGCGTTCGCCTAGGCGAGACCGGATCTCTCCGAGGCGGACACCGAG
AGGAGGGGAAGCGGAGCCAGAGGAAAAGGCTGAGAACCGCGGCGGCGGGG
AGAGGGCCGAAGAAGGCGCCGCGAAGCGCAGCGGCACGTGCGGGAAGGGT
CTCGCCCTCCCGCCGAGCGAGCGCAAGCACGGGGGCGCCTTGGCGTCAGC
GGCGGCGGCGGTGGCCTTCCCCACGGCGCCTCCGCCGTCGCCCATGATCC
CGCGCGAAGCCCACAGGTCGTTCGCGCTCGACGGCGCCGACACTGACAAC
GAATACTGAGGCGTGCGCAGCTGCTGGACGCGCCGCAGGTCGCGGTCCGG
AGGCCGCAGCAGCTGGAGCCGGGAGAGGGACGAGGACGGCGACGGTGGTA
CTCTGCCGCGCCGACGCCCGGTGGTCTCTTCCGGAGGCTCGGGGCAAGAC
GGAGAAGGAGGGACGGAAAACACCAAGCCGCCGCCGCCGCCGCCGCCGTC
GTCCAATTCGCCGTCTTCTTGTAGTGCTACCGATATTTCGGCGGCGAGTG
CGGCGGCGGTAGCGGCGGCGGCGGCGGCGGCTGCTGCTTCTCGGGGACGG
GGGCGGGAGCGAGTGCGGCAGGACGGTGGTGAGATAGCCCAGTCGAGAAG
GAAGGCTGAGGCGAAAATACAGCAGCGGGAGGGAGAGGGAAACGACGAAC
AGGTGCCAAAATCGGTCGGCTCCGACTCTGATCTGGAAGAGATCAGGACG
GCGGCGGAGGGGGCAGGGAAGTCGCCGGCACGGGCGGAGGCGTCGCCGTC
GTCTTGGGTGTCGTCGTCTTGCGAGGTGGAGAACGGAGGAGGAGAGGGCA
CGCGGGAGCAACAACCGGAGCTGCGGGCGGTGCTGGCCAGGCTGCAGGGG
CTGGAGAACACGTGGGTCGCGAGGGTGAAGCAGTTCGAGAAGCTGCTGAA
GCTCAAAGACCTCCGCATCGAGTCCCTGACGCTGCTCCACAAGCACGGGC
CGCTGTCCTCCGGCCGGCCAGCAGGCCTTGGTAGCGGTAGCGGTAGCCGC
CACCGCCGCGGTTTCGACACCCACCACCAGGTGGCAGAGGAGGAGGGGGA
GGAAGCCGCCCCCGCCAAGAGTAACGGCGCCGCCACCCCGTCGGGGAAGC
AGGGCGGGACGCCCGGCAGCGCGGGCGGGAGGCGCAAGAAGAGACGGAGC
TCCCCACGGGAGAGGCGTTCGCCTAGGCGAGACCGGATCTCTCCGAGGCG
GACACCGAGAGGAGGGGAAGCGGAGCCAGAGGAAAAGGCTGAGAACCGCG
GCGGCGGGGAGAGGGCCGAAGAAGGCGCCGCGAAGCGCAGCGGCACGTGC
GGGAAGGGTCTCGCCCTCCCGCCGAGCGAGCGCAAGCACGGGGGCGCCTT
GGCGTCAGCGGCGGCGGCGGTGGCCTTCCCCACGGCGCCTCCGCCGTCGC
CCATGATCCCGCGCGAAGCCCACAGGTCGTTCGCGCTCGACGGCGCCGAC
ACTGACAACGAATACTGA
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