mRNA_E-fasciculatus_F_contig13144.2378.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13144.2378.1
Unique NamemRNA_E-fasciculatus_F_contig13144.2378.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13144.2378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13144contigE-fasciculatus_F_contig13144:1437..1915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size479
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13144.2378.1prot_E-fasciculatus_F_contig13144.2378.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13144 1492..1806 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927818.9894564-UTR-E-fasciculatus_F_contig13144:1436..14911622927818.9894564-UTR-E-fasciculatus_F_contig13144:1436..1491Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13144 1437..1491 +
1695995707.9734473-UTR-E-fasciculatus_F_contig13144:1436..14911695995707.9734473-UTR-E-fasciculatus_F_contig13144:1436..1491Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13144 1437..1491 +
1622927819.0144422-UTR-E-fasciculatus_F_contig13144:1806..19151622927819.0144422-UTR-E-fasciculatus_F_contig13144:1806..1915Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13144 1807..1915 +
1695995707.992963-UTR-E-fasciculatus_F_contig13144:1806..19151695995707.992963-UTR-E-fasciculatus_F_contig13144:1806..1915Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13144 1807..1915 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927819.0033255-CDS-E-fasciculatus_F_contig13144:1491..18061622927819.0033255-CDS-E-fasciculatus_F_contig13144:1491..1806Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13144 1492..1806 +
1695995707.9828491-CDS-E-fasciculatus_F_contig13144:1491..18061695995707.9828491-CDS-E-fasciculatus_F_contig13144:1491..1806Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13144 1492..1806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13144.2378.1

>prot_E-fasciculatus_F_contig13144.2378.1 ID=prot_E-fasciculatus_F_contig13144.2378.1|Name=mRNA_E-fasciculatus_F_contig13144.2378.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=105bp
MKLIYTFFLSRQTHFYNVVHTSELFRVRVFLGGKRVTAVRRSHGTRHRCR
SRYSLALVWICTTCELVNRLRQAVVFLACAGVILRGVHFCRGRYDWMIDP
PPSS*
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mRNA from alignment at E-fasciculatus_F_contig13144:1437..1915+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13144.2378.1 ID=mRNA_E-fasciculatus_F_contig13144.2378.1|Name=mRNA_E-fasciculatus_F_contig13144.2378.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=479bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13144:1437..1915+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCGAAATAATGAAATAATAGAGGGGCGGGGGGGGGTTACTCAAAGGTTC
GTGAGATGAAGCTAATATATACCTTTTTTTTGTCTCGACAGACCCATTTC
TACAACGTCGTGCACACCTCGGAGTTGTTCCGAGTCAGAGTTTTTTTGGG
GGGGAAGCGGGTCACAGCAGTCCGGAGGTCCCATGGAACGCGGCATCGTT
GTCGGTCGAGATATTCGCTAGCACTAGTGTGGATCTGCACGACATGCGAG
CTAGTAAACCGGCTCCGACAAGCAGTAGTTTTTTTGGCTTGTGCTGGGGT
TATTTTGCGCGGTGTCCACTTCTGTCGCGGACGGTACGACTGGATGATAG
ATCCCCCCCCCTCCTCGTAAACGTACTCGCTGCCGGCCCTCTTTTTTTTC
CCGAATGAACGAAATCGCTGGTGGATTTAAATGTCCGTATATCATGATTC
GACGCTCTTTGGTTGTGCGCGCGGCATAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13144:1437..1915+

>mRNA_E-fasciculatus_F_contig13144.2378.1 ID=mRNA_E-fasciculatus_F_contig13144.2378.1|Name=mRNA_E-fasciculatus_F_contig13144.2378.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=630bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13144:1437..1915+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAGCTAATATATACCTTTTTTTTGTCTCGACAGACCCATTTCTACAA
CGTCGTGCACACCTCGGAGTTGTTCCGAGTCAGAGTTTTTTTGGGGGGGA
AGCGGGTCACAGCAGTCCGGAGGTCCCATGGAACGCGGCATCGTTGTCGG
TCGAGATATTCGCTAGCACTAGTGTGGATCTGCACGACATGCGAGCTAGT
AAACCGGCTCCGACAAGCAGTAGTTTTTTTGGCTTGTGCTGGGGTTATTT
TGCGCGGTGTCCACTTCTGTCGCGGACGGTACGACTGGATGATAGATCCC
CCCCCCTCCTCGTAAATGAAGCTAATATATACCTTTTTTTTGTCTCGACA
GACCCATTTCTACAACGTCGTGCACACCTCGGAGTTGTTCCGAGTCAGAG
TTTTTTTGGGGGGGAAGCGGGTCACAGCAGTCCGGAGGTCCCATGGAACG
CGGCATCGTTGTCGGTCGAGATATTCGCTAGCACTAGTGTGGATCTGCAC
GACATGCGAGCTAGTAAACCGGCTCCGACAAGCAGTAGTTTTTTTGGCTT
GTGCTGGGGTTATTTTGCGCGGTGTCCACTTCTGTCGCGGACGGTACGAC
TGGATGATAGATCCCCCCCCCTCCTCGTAA
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