mRNA_E-fasciculatus_F_contig1314.2376.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1314.2376.1
Unique NamemRNA_E-fasciculatus_F_contig1314.2376.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1314.2376.1 vs. uniprot
Match: A0A6H5JBN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBN3_9PHAE)

HSP 1 Score: 263 bits (671), Expect = 2.310e-78
Identity = 131/160 (81.88%), Postives = 147/160 (91.88%), Query Frame = 1 
Query:    1 KPEEPEALLHMAQALSQLGHAVRAAELLDRLLGLGQLTPESRSFVLNRRGNYLTSANDLPGARESYERALDRRGHGHMNRHALYNLARLLHFHIFPSEISIPDFSTIERAVELYREALGQGGDGVGGPIDRSVIFRDMASALMLAGRLEEAIAELEYALA 480
            +PEEP+ALLH+AQAL+QLGH VRA ELLDRLLGLGQ+TPES+SFVLNRRG YL +AND  GA +SYERALD RGHGH+NRHALYNLARLLHFH+ PSEI+IPDFS IERA+ELYREALG GGDG+GGP+DRS IFRDMA+ALMLAGR+EEAIAELEYA A
Sbjct:   88 EPEEPKALLHLAQALAQLGHPVRAVELLDRLLGLGQVTPESKSFVLNRRGIYLMAANDFTGACKSYERALDGRGHGHINRHALYNLARLLHFHVLPSEITIPDFSIIERAIELYREALGPGGDGIGGPVDRSAIFRDMAAALMLAGRVEEAIAELEYATA 247
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1314.2376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JBN3_9PHAE2.310e-7881.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1314contigE-fasciculatus_F_contig1314:17863..18342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size480
Cds size450
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927818.8103228-UTR-E-fasciculatus_F_contig1314:17862..178921622927818.8103228-UTR-E-fasciculatus_F_contig1314:17862..17892Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1314 17863..17892 +
1695995707.8956254-UTR-E-fasciculatus_F_contig1314:17862..178921695995707.8956254-UTR-E-fasciculatus_F_contig1314:17862..17892Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1314 17863..17892 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927818.824707-CDS-E-fasciculatus_F_contig1314:17892..183421622927818.824707-CDS-E-fasciculatus_F_contig1314:17892..18342Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1314 17893..18342 +
1695995707.9117327-CDS-E-fasciculatus_F_contig1314:17892..183421695995707.9117327-CDS-E-fasciculatus_F_contig1314:17892..18342Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1314 17893..18342 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1314.2376.1prot_E-fasciculatus_F_contig1314.2376.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1314 17893..18342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1314.2376.1

>prot_E-fasciculatus_F_contig1314.2376.1 ID=prot_E-fasciculatus_F_contig1314.2376.1|Name=mRNA_E-fasciculatus_F_contig1314.2376.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=150bp
MAQALSQLGHAVRAAELLDRLLGLGQLTPESRSFVLNRRGNYLTSANDLP
GARESYERALDRRGHGHMNRHALYNLARLLHFHIFPSEISIPDFSTIERA
VELYREALGQGGDGVGGPIDRSVIFRDMASALMLAGRLEEAIAELEYALA
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mRNA from alignment at E-fasciculatus_F_contig1314:17863..18342+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1314.2376.1 ID=mRNA_E-fasciculatus_F_contig1314.2376.1|Name=mRNA_E-fasciculatus_F_contig1314.2376.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=480bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1314:17863..18342+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAACCCGAAGAGCCGGAGGCACTCCTGCACATGGCCCAGGCTCTCTCCCA
GCTGGGGCACGCTGTGCGAGCAGCGGAGCTACTGGACCGGCTGTTAGGCC
TTGGTCAACTCACTCCTGAGTCAAGGTCCTTTGTGCTTAACCGACGCGGC
AACTATCTGACGTCTGCCAATGACCTACCTGGCGCGCGTGAGAGTTACGA
ACGGGCACTTGACCGTCGAGGACATGGGCACATGAACAGGCATGCTTTGT
ATAACCTCGCCCGCTTACTGCACTTCCATATATTCCCATCCGAGATAAGT
ATACCGGATTTTTCTACCATTGAACGCGCTGTCGAGCTCTATCGAGAGGC
GCTCGGTCAGGGCGGCGACGGTGTAGGAGGCCCAATTGATCGATCTGTCA
TTTTCAGAGACATGGCGTCCGCTCTCATGTTGGCCGGCCGGCTCGAGGAA
GCCATCGCAGAGCTCGAGTACGCCTTGGCA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1314:17863..18342+

>mRNA_E-fasciculatus_F_contig1314.2376.1 ID=mRNA_E-fasciculatus_F_contig1314.2376.1|Name=mRNA_E-fasciculatus_F_contig1314.2376.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=900bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1314:17863..18342+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCCCAGGCTCTCTCCCAGCTGGGGCACGCTGTGCGAGCAGCGGAGCT
ACTGGACCGGCTGTTAGGCCTTGGTCAACTCACTCCTGAGTCAAGGTCCT
TTGTGCTTAACCGACGCGGCAACTATCTGACGTCTGCCAATGACCTACCT
GGCGCGCGTGAGAGTTACGAACGGGCACTTGACCGTCGAGGACATGGGCA
CATGAACAGGCATGCTTTGTATAACCTCGCCCGCTTACTGCACTTCCATA
TATTCCCATCCGAGATAAGTATACCGGATTTTTCTACCATTGAACGCGCT
GTCGAGCTCTATCGAGAGGCGCTCGGTCAGGGCGGCGACGGTGTAGGAGG
CCCAATTGATCGATCTGTCATTTTCAGAGACATGGCGTCCGCTCTCATGT
TGGCCGGCCGGCTCGAGGAAGCCATCGCAGAGCTCGAGTACGCCTTGGCA
ATGGCCCAGGCTCTCTCCCAGCTGGGGCACGCTGTGCGAGCAGCGGAGCT
ACTGGACCGGCTGTTAGGCCTTGGTCAACTCACTCCTGAGTCAAGGTCCT
TTGTGCTTAACCGACGCGGCAACTATCTGACGTCTGCCAATGACCTACCT
GGCGCGCGTGAGAGTTACGAACGGGCACTTGACCGTCGAGGACATGGGCA
CATGAACAGGCATGCTTTGTATAACCTCGCCCGCTTACTGCACTTCCATA
TATTCCCATCCGAGATAAGTATACCGGATTTTTCTACCATTGAACGCGCT
GTCGAGCTCTATCGAGAGGCGCTCGGTCAGGGCGGCGACGGTGTAGGAGG
CCCAATTGATCGATCTGTCATTTTCAGAGACATGGCGTCCGCTCTCATGT
TGGCCGGCCGGCTCGAGGAAGCCATCGCAGAGCTCGAGTACGCCTTGGCA
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