mRNA_E-fasciculatus_F_contig13135.2372.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13135.2372.1
Unique NamemRNA_E-fasciculatus_F_contig13135.2372.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13135.2372.1 vs. uniprot
Match: D7FKG1_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG1_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 2.770e-20
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:    1 LEQEREKLGSELSEAQNIYMQSLEDVKLRQMRINELGNKISDWEVKLKQQ 150
            LEQEREKLGSELSEAQNIYMQSLEDVKLRQMRINELGNKISDWEVKLKQQ
Sbjct:  452 LEQEREKLGSELSEAQNIYMQSLEDVKLRQMRINELGNKISDWEVKLKQQ 501
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BLAST of mRNA_E-fasciculatus_F_contig13135.2372.1 vs. uniprot
Match: A0A6H5KSY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY2_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 6.180e-17
Identity = 47/50 (94.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 LEQEREKLGSELSEAQNIYMQSLEDVKLRQMRINELGNKISDWEVKLKQQ 150
            LEQEREKLGSELSEAQNIYMQSLEDVK   MRINELGNKISDWEVKLKQQ
Sbjct:  197 LEQEREKLGSELSEAQNIYMQSLEDVK---MRINELGNKISDWEVKLKQQ 243
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BLAST of mRNA_E-fasciculatus_F_contig13135.2372.1 vs. uniprot
Match: A0A836CGY9_9STRA (Flagellar associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGY9_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.390e-12
Identity = 35/50 (70.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 LEQEREKLGSELSEAQNIYMQSLEDVKLRQMRINELGNKISDWEVKLKQQ 150
            LE+EREK G ELS+A+ +YMQ+LEDVKLR+MRINELG ++ +WE KLKQQ
Sbjct:  429 LEREREKFGEELSDARQMYMQALEDVKLREMRINELGKRVGEWEGKLKQQ 478
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BLAST of mRNA_E-fasciculatus_F_contig13135.2372.1 vs. uniprot
Match: A0A7S3XSB1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSB1_HETAK)

HSP 1 Score: 59.7 bits (143), Expect = 1.100e-7
Identity = 27/50 (54.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 LEQEREKLGSELSEAQNIYMQSLEDVKLRQMRINELGNKISDWEVKLKQQ 150
            LE+ERE+ G E +E +N+  ++LE+VKL++MR+NEL  K+++WE KLKQQ
Sbjct:   50 LEKERERHGREAAEQRNLCKEALEEVKLKEMRVNELAKKVAEWEAKLKQQ 99
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BLAST of mRNA_E-fasciculatus_F_contig13135.2372.1 vs. uniprot
Match: A0A388KMS5_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KMS5_CHABU)

HSP 1 Score: 56.2 bits (134), Expect = 2.000e-6
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 LEQEREKLGSELSEAQNIYMQSLEDVKLRQMRINELGNKISDWEVKLKQQ 150
            LE+EREK G+E SEA N YMQ+LE+VK+R+M I EL  KI + E K+KQQ
Sbjct:  446 LEKEREKYGTEASEATNKYMQALEEVKMREMTIIELQKKIVEAESKMKQQ 495
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BLAST of mRNA_E-fasciculatus_F_contig13135.2372.1 vs. uniprot
Match: A0A061SN17_9CHLO (Flagellar associated protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SN17_9CHLO)

HSP 1 Score: 53.9 bits (128), Expect = 1.220e-5
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 LEQEREKLGSELSEAQNIYMQSLEDVKLRQMRINELGNKISDWEVKLKQQ 150
            LE+EREK G+E SEA + Y Q+LE+VKLR+M I +L  KIS+ E +LKQQ
Sbjct:  440 LEKEREKYGTEASEANSKYTQALEEVKLREMAIIDLQKKISEGENRLKQQ 489
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BLAST of mRNA_E-fasciculatus_F_contig13135.2372.1 vs. uniprot
Match: A0A7S1TS05_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TS05_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.220e-5
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 LEQEREKLGSELSEAQNIYMQSLEDVKLRQMRINELGNKISDWEVKL 141
            LE+EREK G+E SE +N+Y  +LE+VKLR MRI E   K+++WE KL
Sbjct:  437 LEKEREKYGTEASEQRNLYQNTLEEVKLRNMRIAEQQKKLTEWEGKL 483
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13135.2372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FKG1_ECTSI2.770e-20100.00Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KSY2_9PHAE6.180e-1794.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CGY9_9STRA2.390e-1270.00Flagellar associated protein n=1 Tax=Tribonema min... [more]
A0A7S3XSB1_HETAK1.100e-754.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A388KMS5_CHABU2.000e-662.00Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A061SN17_9CHLO1.220e-560.00Flagellar associated protein n=1 Tax=Tetraselmis s... [more]
A0A7S1TS05_9STRA1.220e-557.45Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13135contigE-fasciculatus_F_contig13135:180..1909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.7
Seed ortholog evalue9.4e-18
Seed eggNOG ortholog2880.D7FKG1
Preferred nameFAP189
GOsGO:0001539,GO:0006928,GO:0008150,GO:0009987,GO:0040011,GO:0048870,GO:0051179,GO:0051674,GO:0060285
EggNOG OGs28HHA@1,2QPV7@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size423
Cds size423
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13135.2372.1prot_E-fasciculatus_F_contig13135.2372.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13135 180..1909 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927818.1756485-CDS-E-fasciculatus_F_contig13135:179..2601622927818.1756485-CDS-E-fasciculatus_F_contig13135:179..260Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13135 180..260 +
1695995707.5812843-CDS-E-fasciculatus_F_contig13135:179..2601695995707.5812843-CDS-E-fasciculatus_F_contig13135:179..260Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13135 180..260 +
1622927818.1925504-CDS-E-fasciculatus_F_contig13135:1181..13971622927818.1925504-CDS-E-fasciculatus_F_contig13135:1181..1397Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13135 1182..1397 +
1695995707.5995255-CDS-E-fasciculatus_F_contig13135:1181..13971695995707.5995255-CDS-E-fasciculatus_F_contig13135:1181..1397Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13135 1182..1397 +
1622927818.208658-CDS-E-fasciculatus_F_contig13135:1783..19091622927818.208658-CDS-E-fasciculatus_F_contig13135:1783..1909Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13135 1784..1909 +
1695995707.608252-CDS-E-fasciculatus_F_contig13135:1783..19091695995707.608252-CDS-E-fasciculatus_F_contig13135:1783..1909Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13135 1784..1909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13135.2372.1

>prot_E-fasciculatus_F_contig13135.2372.1 ID=prot_E-fasciculatus_F_contig13135.2372.1|Name=mRNA_E-fasciculatus_F_contig13135.2372.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=141bp
LEQEREKLGSELSEAQNIYMQSLEDVKLRQMRINELGNKISDWEVKLKQQ
QQLYESVRSDRNLYSKNLIEAQDEIAEMKRKLKIMNHQIEQLKEDITAKD
HALVKEHFDHQKAETQREQMRNEIDRMKRLLENNDTVVHKQ
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mRNA from alignment at E-fasciculatus_F_contig13135:180..1909+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13135.2372.1 ID=mRNA_E-fasciculatus_F_contig13135.2372.1|Name=mRNA_E-fasciculatus_F_contig13135.2372.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1730bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13135:180..1909+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGGAGCAAGAGAGGGAGAAGCTGGGAAGCGAGCTCAGCGAGGCGCAGAA
CATCTACATGCAATCTCTCGAGGACGTCAAGGTTAGCTGGTTGCTACTGC
TGTTGTTGGTCCTCTTGTTCTTGTTCTTGTTGCTGCCTGCCGTGGTTATC
GTTTGTTTTGTTCCCGAATCACTTTCGCCAACATCTCACGTAGTATTGCC
ATGCGTTGATTCCGACACGCAGCGTCTTTCGCCGGCAAGGACATAGTGGA
CATGGCAAACACGCCGCACTTGGAGGGAGTCAAGATTGCGAACAATAATA
TATTCTTAGCAATACGGAAACATCCGTGAACTCTCGAGGACTTTTCAGAA
CTAGTTGTAGTCGCTCTCCATTCGTAGCCGTCCACCAGGTTAGATTCTGA
CTGTTAAGGAAGATAGCCAACCCGCCTTCGACGAGAATCCAAAAATTCAA
GATGTTCGTAAAATTTCTGTCTCCACGATGTTCTTGCCGTCGTTGCTGTT
GTCTTCACATTCAATAACGCTCGGAACTCCATCCAGAGCACCACCCGACT
CGTCGAACAGACGAAAAGAAGATAGTATTTCCTACCCGTTTTGTGCGACA
CACCATTCAGTGCGACGACGATCAACACCCCCCTCCCCCCTCCTCTTGAC
CCCTCCTCGGCATTGCAAGAGCACTTGAAACGAAATGGGTCGGAGCTCGC
GCGACGGATAACCACAAAACGACGATCGCAACGAAAATGCGAACAAAAAT
ACCTGGCACATATGGACACCACCGGTTTCATCGCACCGTACGGTTTCAAG
AGATACCTTGCCGTAAGAAGTATCAGTTTTCGAGCGGCCCCGATAGTCGA
AGCAGCTTCACACGCGCACGAAGGCACTGTACAGAACCGACAGAGGTTAG
CCCGCTAGGATATTCTATTGCGCGAACGACTGGCTGTCCTCGCTGCTTGC
ATCAAACACTTTACGTGTCTTCCTCCGTAAACACAAACACACACGTCAAC
AGCTCCGTCAAATGCGCATCAACGAGCTCGGCAACAAGATCAGCGACTGG
GAGGTGAAGCTCAAGCAACAGCAGCAGCTCTATGAGAGCGTGCGGAGCGA
CCGCAACCTGTACAGCAAGAACCTCATCGAGGCGCAGGATGAGATAGCGG
AGATGAAGCGCAAGCTCAAGATCATGAACCACCAGATAGAGCAGCTCAAG
GAAGACATCACCGCCAAGGTGAATGTCTCTCTCTTTTGCGAGCTTAATTA
GGTGCGGTAAGACATGGGGGCAAGTCAGCAAGTCCGGCCGCAGCTGTAAT
CCACGTCGTTTGGAGTTAGTTGCGCTTCGCCCCAAGTGGGAAAAGCAAGA
TATCCCCGTCGGAAAACAAAACATGGTTTTCGGGCGTCCCATTCTTGAAT
CGTCGTTCGCGGTATCTACCCGCTCGGTGGTCTTGCCCTTCACGTGACAT
GTCTTTTTGCGACTGGCAGTAACACAGCGGGACAACAACCGTCCACAGCT
TACAGTACACCGCGCCCTCCTTCACTTTTGACCCGGAAGGGGGGCCGACG
CCAAATGACACGTCACGTGAACACTACTTATGCATACGTATCTGTATACT
GCAGGACCACGCCTTGGTGAAAGAGCATTTCGACCACCAGAAGGCCGAGA
CGCAGAGGGAGCAGATGCGCAACGAGATCGACCGCATGAAGCGCCTTCTG
GAGAACAACGATACCGTCGTGCACAAGCAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13135:180..1909+

>mRNA_E-fasciculatus_F_contig13135.2372.1 ID=mRNA_E-fasciculatus_F_contig13135.2372.1|Name=mRNA_E-fasciculatus_F_contig13135.2372.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=846bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13135:180..1909+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGGAGCAAGAGAGGGAGAAGCTGGGAAGCGAGCTCAGCGAGGCGCAGAA
CATCTACATGCAATCTCTCGAGGACGTCAAGCTGGAGCAAGAGAGGGAGA
AGCTGGGAAGCGAGCTCAGCGAGGCGCAGAACATCTACATGCAATCTCTC
GAGGACGTCAAGCTCCGTCAAATGCGCATCAACGAGCTCGGCAACAAGAT
CAGCGACTGGGAGGTGAAGCTCAAGCAACAGCAGCAGCTCTATGAGAGCG
TGCGGAGCGACCGCAACCTGTACAGCAAGAACCTCATCGAGGCGCAGGAT
GAGATAGCGGAGATGAAGCGCAAGCTCAAGATCATGAACCACCAGATAGA
GCAGCTCAAGGAAGACATCACCGCCAAGCTCCGTCAAATGCGCATCAACG
AGCTCGGCAACAAGATCAGCGACTGGGAGGTGAAGCTCAAGCAACAGCAG
CAGCTCTATGAGAGCGTGCGGAGCGACCGCAACCTGTACAGCAAGAACCT
CATCGAGGCGCAGGATGAGATAGCGGAGATGAAGCGCAAGCTCAAGATCA
TGAACCACCAGATAGAGCAGCTCAAGGAAGACATCACCGCCAAGGACCAC
GCCTTGGTGAAAGAGCATTTCGACCACCAGAAGGCCGAGACGCAGAGGGA
GCAGATGCGCAACGAGATCGACCGCATGAAGCGCCTTCTGGAGAACAACG
ATACCGTCGTGCACAAGCAGGACCACGCCTTGGTGAAAGAGCATTTCGAC
CACCAGAAGGCCGAGACGCAGAGGGAGCAGATGCGCAACGAGATCGACCG
CATGAAGCGCCTTCTGGAGAACAACGATACCGTCGTGCACAAGCAG
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