mRNA_E-fasciculatus_F_contig13124.2368.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13124.2368.1
Unique NamemRNA_E-fasciculatus_F_contig13124.2368.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13124.2368.1 vs. uniprot
Match: D7FPN5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPN5_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 5.300e-47
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 1 
Query:   31 MLFGFSLLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSPSASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAMLP 270
            MLFGF+LLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSPSASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAMLP
Sbjct:    1 MLFGFNLLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSPSASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAMLP 80
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BLAST of mRNA_E-fasciculatus_F_contig13124.2368.1 vs. uniprot
Match: A0A835YX81_9STRA (Yos1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX81_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.240e-20
Identity = 45/72 (62.50%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:   52 LWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSPSASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAML 267
            LW LFK GLL TNAV ILHK+RFLR     E D +  +S +KNQ +GLI AVAYLRGPLI +N LTC   ML
Sbjct:    4 LWSLFKTGLLVTNAVAILHKERFLRPLGWAEPDPALGSSNLKNQAIGLINAVAYLRGPLIAINLLTCTFEML 75
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BLAST of mRNA_E-fasciculatus_F_contig13124.2368.1 vs. uniprot
Match: K8ZAA6_NANGC (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8ZAA6_NANGC)

HSP 1 Score: 75.9 bits (185), Expect = 5.640e-16
Identity = 39/72 (54.17%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:   52 LWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSPSASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAML 267
            +W L+K+GLL TN V +LH++RFLRKY LD  + + + S ++NQVVGL+ AV YL+ PLI LN +T VI +L
Sbjct:    5 IWSLYKSGLLFTNGVAVLHRKRFLRKYGLDVAEVADTTS-IRNQVVGLLNAVQYLKVPLIALNIVTVVIELL 75
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BLAST of mRNA_E-fasciculatus_F_contig13124.2368.1 vs. uniprot
Match: A0A2D4BY06_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BY06_PYTIN)

HSP 1 Score: 71.2 bits (173), Expect = 3.520e-14
Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 1 
Query:   49 LLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSPSASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAML 267
            +LW  F + LL TNAV ILH++RFLRKY  D+VD S   + ++NQ+VG + AV YLR PLIV+N+L  ++ ++
Sbjct:    3 VLWGFFLSSLLLTNAVCILHEKRFLRKYGWDKVDPSQGMT-IRNQIVGFLVAVQYLRVPLIVVNALMILLQLV 74
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BLAST of mRNA_E-fasciculatus_F_contig13124.2368.1 vs. uniprot
Match: A0A067C849_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C849_SAPPC)

HSP 1 Score: 70.9 bits (172), Expect = 5.250e-14
Identity = 35/73 (47.95%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:   52 LWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSPSAS-AMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAML 267
            +WKL  + LL+ NA+ ILH++RFLR+Y  D+++ S   S +MKNQVVG + AV YLR PL+V+N +   + +L
Sbjct:    4 IWKLIMSSLLSVNALAILHEKRFLRRYGYDQLEASSGGSPSMKNQVVGFLVAVQYLRMPLVVINIVAIFLELL 76
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BLAST of mRNA_E-fasciculatus_F_contig13124.2368.1 vs. uniprot
Match: A0A8K1FQA8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FQA8_PYTOL)

HSP 1 Score: 68.9 bits (167), Expect = 2.850e-13
Identity = 35/73 (47.95%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:   49 LLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSPSASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAML 267
            +LW  F + LL TNAV ILH++RFLR Y  D++D S   + +KNQVVG + AV YLR PLI++N+   ++ ++
Sbjct:    3 VLWDFFLSSLLLTNAVCILHEKRFLRPYGWDKIDSSQGMT-IKNQVVGFLVAVQYLRVPLIIVNAFMILLELV 74
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BLAST of mRNA_E-fasciculatus_F_contig13124.2368.1 vs. uniprot
Match: A0A3F2RI45_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RI45_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 5.720e-13
Identity = 35/73 (47.95%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:   49 LLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSPSASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAML 267
            +LW  F   LL TNAV ILH++RFLR +  D+VD S   + +KNQ+VG + AV YLR PL+V+N+L  ++ ++
Sbjct:    3 VLWNFFLTSLLLTNAVCILHEKRFLRSHGWDKVDSSQGMT-IKNQIVGFLIAVQYLRFPLMVINTLMILLELV 74
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BLAST of mRNA_E-fasciculatus_F_contig13124.2368.1 vs. uniprot
Match: K3WSH3_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WSH3_GLOUD)

HSP 1 Score: 62.8 bits (151), Expect = 7.490e-11
Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   49 LLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSPSASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAML 267
            +LW      LL TNAV ILH++RFL+ Y   +V+ S   + +KNQVVG + AV YLR PLIV+N+   V+ ++
Sbjct:    3 VLWNFVLTSLLLTNAVCILHEKRFLKPYGWHKVEASEGMT-IKNQVVGFLVAVQYLRVPLIVINAFMIVLELV 74
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BLAST of mRNA_E-fasciculatus_F_contig13124.2368.1 vs. uniprot
Match: A0A0P1A8P8_PLAHL (Immediate early response 3-interacting protein 1-like n=12 Tax=Peronosporaceae TaxID=4777 RepID=A0A0P1A8P8_PLAHL)

HSP 1 Score: 62.4 bits (150), Expect = 1.060e-10
Identity = 32/73 (43.84%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:   49 LLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSPSASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAML 267
            +LW      LL TNAV ILH++RFLR +   +VD S   + +KNQ+VG + AV YLR PL+++N+L  ++ ++
Sbjct:    3 VLWNFVLTSLLLTNAVCILHEKRFLRSHGWHKVDSSQGMT-IKNQIVGFLIAVQYLRFPLMIINTLMILLELV 74
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13124.2368.1 vs. uniprot
Match: G4ZTT8_PHYSP (AP-3 complex subunit delta n=21 Tax=Phytophthora TaxID=4783 RepID=G4ZTT8_PHYSP)

HSP 1 Score: 63.2 bits (152), Expect = 2.610e-9
Identity = 33/73 (45.21%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:   49 LLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSPSASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAML 267
            +LW      LL TNAV ILH++RFLR +   +VD S   + +KNQ+VG + AV YLR PL+++N+L  ++ +L
Sbjct:    3 VLWNFVLTSLLLTNAVCILHEKRFLRPHGWHKVDSSQGMT-IKNQIVGFLIAVQYLRFPLMIINTLMILLELL 74
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13124.2368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FPN5_ECTSI5.300e-4798.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YX81_9STRA2.240e-2062.50Yos1-like protein n=1 Tax=Tribonema minus TaxID=30... [more]
K8ZAA6_NANGC5.640e-1654.17Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A2D4BY06_PYTIN3.520e-1450.68Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A067C849_SAPPC5.250e-1447.95Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
A0A8K1FQA8_PYTOL2.850e-1347.95Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3F2RI45_9STRA5.720e-1347.95Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
K3WSH3_GLOUD7.490e-1146.58Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
A0A0P1A8P8_PLAHL1.060e-1043.84Immediate early response 3-interacting protein 1-l... [more]
G4ZTT8_PHYSP2.610e-945.21AP-3 complex subunit delta n=21 Tax=Phytophthora T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13124contigE-fasciculatus_F_contig13124:2347..3695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue1.6e-09
Seed eggNOG ortholog112098.XP_008608353.1
EggNOG free text desc.Yos1-like
EggNOG OGs2E2PC@1,2S9WB@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionYos1-like
Ec32 orthologEc-16_001310.1
Exons2
Model size327
Cds size243
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13124.2368.1prot_E-fasciculatus_F_contig13124.2368.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13124 2377..3641 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927817.67894-UTR-E-fasciculatus_F_contig13124:2346..23761622927817.67894-UTR-E-fasciculatus_F_contig13124:2346..2376Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13124 2347..2376 +
1695995707.2637715-UTR-E-fasciculatus_F_contig13124:2346..23761695995707.2637715-UTR-E-fasciculatus_F_contig13124:2346..2376Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13124 2347..2376 +
1622927817.720754-UTR-E-fasciculatus_F_contig13124:3641..36951622927817.720754-UTR-E-fasciculatus_F_contig13124:3641..3695Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13124 3642..3695 +
1695995707.2957497-UTR-E-fasciculatus_F_contig13124:3641..36951695995707.2957497-UTR-E-fasciculatus_F_contig13124:3641..3695Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13124 3642..3695 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927817.6889257-CDS-E-fasciculatus_F_contig13124:2376..24761622927817.6889257-CDS-E-fasciculatus_F_contig13124:2376..2476Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13124 2377..2476 +
1695995707.2759528-CDS-E-fasciculatus_F_contig13124:2376..24761695995707.2759528-CDS-E-fasciculatus_F_contig13124:2376..2476Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13124 2377..2476 +
1622927817.7039855-CDS-E-fasciculatus_F_contig13124:3498..36411622927817.7039855-CDS-E-fasciculatus_F_contig13124:3498..3641Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13124 3499..3641 +
1695995707.2857654-CDS-E-fasciculatus_F_contig13124:3498..36411695995707.2857654-CDS-E-fasciculatus_F_contig13124:3498..3641Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13124 3499..3641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13124.2368.1

>prot_E-fasciculatus_F_contig13124.2368.1 ID=prot_E-fasciculatus_F_contig13124.2368.1|Name=mRNA_E-fasciculatus_F_contig13124.2368.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=81bp
MLFGFSLLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSPSASAMKN
QVVGLIAAVAYLRGPLIVLNSLTCVIAMLP*
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mRNA from alignment at E-fasciculatus_F_contig13124:2347..3695+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13124.2368.1 ID=mRNA_E-fasciculatus_F_contig13124.2368.1|Name=mRNA_E-fasciculatus_F_contig13124.2368.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1349bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13124:2347..3695+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGAGGAAGTGGAGAGGGTGGTTCGTGCTCAATGTTGTTTGGCTTTAGCCT
GCTGTGGAAGCTCTTCAAGGCTGGGCTGCTGGCCACCAATGCCGTAACAA
TTCTCCACAAGCAGCGCTTCTTGAGAAAATGTGAGCAGGCTCTGGTTATT
ACTCCGCGTCTCTCTCCCGCTGCTGTGTTCACTGCGTATGGGACGATGGC
ATCAGTGGGGTATGTGGAGCCCGCACAGAGCTGAAACAAAGCGCAACTTT
GCCATAAATAGAGAAAGAGAGGAGCCCACCTACCCAATAGGAAGCAGGCA
ACCTCATCCCAAAATGGCGTGGTTGGTACGGAAGGCCAATGGACGTCGAA
CACCGCCGTGGATGCAACCAACTGCTCTCTCACCGCCGCCGTACAGCGAC
GGATACTGCTGCTGCTGATACTGTATTGTTGTAGAGGTCGACGACACACG
ATGTCTCTTTTACTTCGAACACCGTGCTGAGCGCTCTGACCTGCACCTTC
TTAGGGTGTATCCTGTTGATGTGCGTCACCACTTTCGATTTGGACCATTT
AGACGTTGGTTTCTGCTTGCGAAACTTGACATAACTGCAGCACAGCAGGG
AACGTGAGGTTTTGACCCCCCGGCGTCCTCGTGTACGATCAATCCGGTAC
AATAGCAGTACGAGAATTGTGTACGTTGAAACCCGCGCTGGTGAGAACAC
AGAGCAGGCTTGCGTGTATGGCGAGCAGTCCTCCCAACCACGCCACCAGT
GACTCTCGTGGGATAAAAACACAGCTTTCACCCAGTATGCCTAGCTTTGT
TCCTCTATCCTTCGGCTCCCTCGCGGGCGCCCCTAAGTGTTTGCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGGGCACTTTCTCTCGTCCTC
TGTGTTTTGCCGCGTTTGCATGGCCTTAACAAGCAGCATGAGACACATTT
CTCTTCCACATTGCATTACGCCCATGTGCGTACCGTTGCACCGCGCCAAT
AGTTGCAGTCTAACCCCACACCAGCGCAGTAGCCTGCGCGAGGGTATTTC
ACTTGGTTTTAGTAGGGGTTACGGGGGTTGGGCTAGGGCTAGGTAGGTCG
GTCCTTCGCGCGAGAGACACGAACCCTCCGCGCTCAACGTGTGACTTCGC
AGATCGGCTTGACGAGGTGGACCACTCGCCGTCGGCTTCGGCGATGAAGA
ACCAGGTGGTGGGCTTGATCGCGGCGGTGGCGTATCTCCGCGGCCCGCTG
ATCGTCCTCAACTCCCTCACCTGTGTCATCGCGATGCTTCCATGACGTAC
ATCATCGTCGCAAGCCGAAAGGGGGTTCCGTAGTGTCTTTTCGACACGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13124:2347..3695+

>mRNA_E-fasciculatus_F_contig13124.2368.1 ID=mRNA_E-fasciculatus_F_contig13124.2368.1|Name=mRNA_E-fasciculatus_F_contig13124.2368.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=486bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13124:2347..3695+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTGTTTGGCTTTAGCCTGCTGTGGAAGCTCTTCAAGGCTGGGCTGCT
GGCCACCAATGCCGTAACAATTCTCCACAAGCAGCGCTTCTTGAGAAAAT
ATGTTGTTTGGCTTTAGCCTGCTGTGGAAGCTCTTCAAGGCTGGGCTGCT
GGCCACCAATGCCGTAACAATTCTCCACAAGCAGCGCTTCTTGAGAAAAT
ATCGGCTTGACGAGGTGGACCACTCGCCGTCGGCTTCGGCGATGAAGAAC
CAGGTGGTGGGCTTGATCGCGGCGGTGGCGTATCTCCGCGGCCCGCTGAT
CGTCCTCAACTCCCTCACCTGTGTCATCGCGATGCTTCCATGAATCGGCT
TGACGAGGTGGACCACTCGCCGTCGGCTTCGGCGATGAAGAACCAGGTGG
TGGGCTTGATCGCGGCGGTGGCGTATCTCCGCGGCCCGCTGATCGTCCTC
AACTCCCTCACCTGTGTCATCGCGATGCTTCCATGA
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