mRNA_E-fasciculatus_F_contig13120.2365.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13120.2365.1
Unique NamemRNA_E-fasciculatus_F_contig13120.2365.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13120.2365.1 vs. uniprot
Match: A0A6H5KWG5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWG5_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 7.080e-13
Identity = 35/37 (94.59%), Postives = 37/37 (100.00%), Query Frame = 3 
Query:  237 MPEPKLLPSLGITFLLCYVALSRARGGGANRLSSRAH 347
            MPEPKLLPSLGITFLLCYVALSRARGGGA+RLSSR+H
Sbjct:    1 MPEPKLLPSLGITFLLCYVALSRARGGGASRLSSRSH 37
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13120.2365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KWG5_9PHAE7.080e-1394.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13120contigE-fasciculatus_F_contig13120:1703..2049 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size348
Cds size111
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927817.4702752-UTR-E-fasciculatus_F_contig13120:1702..19381622927817.4702752-UTR-E-fasciculatus_F_contig13120:1702..1938Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13120 1703..1938 +
1695995707.1809142-UTR-E-fasciculatus_F_contig13120:1702..19381695995707.1809142-UTR-E-fasciculatus_F_contig13120:1702..1938Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13120 1703..1938 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927817.4802966-CDS-E-fasciculatus_F_contig13120:1938..20491622927817.4802966-CDS-E-fasciculatus_F_contig13120:1938..2049Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13120 1939..2049 +
1695995707.1898777-CDS-E-fasciculatus_F_contig13120:1938..20491695995707.1898777-CDS-E-fasciculatus_F_contig13120:1938..2049Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13120 1939..2049 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13120.2365.1prot_E-fasciculatus_F_contig13120.2365.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13120 1939..2049 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13120.2365.1

>prot_E-fasciculatus_F_contig13120.2365.1 ID=prot_E-fasciculatus_F_contig13120.2365.1|Name=mRNA_E-fasciculatus_F_contig13120.2365.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=37bp
MPEPKLLPSLGITFLLCYVALSRARGGGANRLSSRAH
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mRNA from alignment at E-fasciculatus_F_contig13120:1703..2049+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13120.2365.1 ID=mRNA_E-fasciculatus_F_contig13120.2365.1|Name=mRNA_E-fasciculatus_F_contig13120.2365.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=347bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13120:1703..2049+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGACCAAGATCTATGCGTGGGCCTATTGAAGGCGCATAAAGTGGGCTCGT
GGTACGCGCGAGTGCAGCGCGAAATTCTCTCCGCTGGCTTAAGCTCAAAA
GCAGGAGGAGCCCAATTCTGTTGGCCACTCTGTTGAACGTGGAACGAACA
AGCTGCGCAAACCTTCACCTTTGATCTTCACCGCTCTCACGCTCTCACCT
CTCTCTCACCGCCTCGACGTTCTTTCGGGTCTGCTGATGCCCGAGCCGAA
GCTGCTACCGTCGCTCGGCATCACATTTCTCCTGTGCTATGTGGCGCTCA
GTAGAGCGCGAGGTGGGGGCGCGAACAGACTTTCATCGCGTGCGCAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13120:1703..2049+

>mRNA_E-fasciculatus_F_contig13120.2365.1 ID=mRNA_E-fasciculatus_F_contig13120.2365.1|Name=mRNA_E-fasciculatus_F_contig13120.2365.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=222bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13120:1703..2049+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCCGAGCCGAAGCTGCTACCGTCGCTCGGCATCACATTTCTCCTGTG
CTATGTGGCGCTCAGTAGAGCGCGAGGTGGGGGCGCGAACAGACTTTCAT
CGCGTGCGCACATGCCCGAGCCGAAGCTGCTACCGTCGCTCGGCATCACA
TTTCTCCTGTGCTATGTGGCGCTCAGTAGAGCGCGAGGTGGGGGCGCGAA
CAGACTTTCATCGCGTGCGCAC
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