mRNA_E-fasciculatus_F_contig13118.2362.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13118.2362.1
Unique NamemRNA_E-fasciculatus_F_contig13118.2362.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13118.2362.1 vs. uniprot
Match: A0A6H5L1Y3_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Y3_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 4.180e-36
Identity = 86/119 (72.27%), Postives = 90/119 (75.63%), Query Frame = 1 
Query:    1 DGFRAKAAGLMAMLAVRSEGFYGRDMAHFFSAVQAAVFGSEDCELTEELWAGAERQKLKEFSEKLVLTATAAANTASKRTSAATKSSPSLLEQCTTPTT-TSSDATKLGIGKSVSSEGT 354
            DGFRAKAAGLMAMLAVRSEGFYGRDMAHFFSAVQAAVFGSED ELTE LWA  ERQKLKEFSEKL+LTATAAAN ASK T                    T  DATKLGIG++VS+ GT
Sbjct:  408 DGFRAKAAGLMAMLAVRSEGFYGRDMAHFFSAVQAAVFGSEDYELTEALWASTERQKLKEFSEKLILTATAAANAASKGTXXXXXXXXXXXXXXXXXXXXTLGDATKLGIGRNVSNAGT 526
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BLAST of mRNA_E-fasciculatus_F_contig13118.2362.1 vs. uniprot
Match: D7FS39_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS39_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 3.310e-35
Identity = 85/119 (71.43%), Postives = 89/119 (74.79%), Query Frame = 1 
Query:    1 DGFRAKAAGLMAMLAVRSEGFYGRDMAHFFSAVQAAVFGSEDCELTEELWAGAERQKLKEFSEKLVLTATAAANTASKRTSAATKSSPSLLEQ-CTTPTTTSSDATKLGIGKSVSSEGT 354
            DGFRAKAAGLMAMLAVRSEGFYGRDM HFFSAVQAAVFGSEDCELTE LWA  ERQKLKEFSEKLVLTATAAA                L  +      TT SDATKLGIG++VS+ GT
Sbjct:  801 DGFRAKAAGLMAMLAVRSEGFYGRDMEHFFSAVQAAVFGSEDCELTEALWASTERQKLKEFSEKLVLTATAAAKXXXXXXXXXXXXXXLLQXRGACXXXTTLSDATKLGIGRNVSNAGT 919
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13118.2362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L1Y3_9PHAE4.180e-3672.27AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FS39_ECTSI3.310e-3571.43AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13118contigE-fasciculatus_F_contig13118:2114..3089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.9
Seed ortholog evalue9.4e-26
Seed eggNOG ortholog2880.D7FS39
KEGG koko:K17681
EggNOG free text desc.mitochondrion organization
EggNOG OGsCOG1223@1,KOG0742@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Hectar predicted targeting categoryother localisation
Exons2
Model size355
Cds size324
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13118.2362.1prot_E-fasciculatus_F_contig13118.2362.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13118 2114..3059 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927816.3171968-CDS-E-fasciculatus_F_contig13118:2113..23651622927816.3171968-CDS-E-fasciculatus_F_contig13118:2113..2365Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13118 2114..2365 -
1695995706.8589454-CDS-E-fasciculatus_F_contig13118:2113..23651695995706.8589454-CDS-E-fasciculatus_F_contig13118:2113..2365Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13118 2114..2365 -
1622927816.3291538-CDS-E-fasciculatus_F_contig13118:2987..30591622927816.3291538-CDS-E-fasciculatus_F_contig13118:2987..3059Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13118 2988..3059 -
1695995706.8716156-CDS-E-fasciculatus_F_contig13118:2987..30591695995706.8716156-CDS-E-fasciculatus_F_contig13118:2987..3059Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13118 2988..3059 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927816.3388138-UTR-E-fasciculatus_F_contig13118:3059..30891622927816.3388138-UTR-E-fasciculatus_F_contig13118:3059..3089Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13118 3060..3089 -
1695995706.885879-UTR-E-fasciculatus_F_contig13118:3059..30891695995706.885879-UTR-E-fasciculatus_F_contig13118:3059..3089Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13118 3060..3089 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13118.2362.1

>prot_E-fasciculatus_F_contig13118.2362.1 ID=prot_E-fasciculatus_F_contig13118.2362.1|Name=mRNA_E-fasciculatus_F_contig13118.2362.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=108bp
MAMLAVRSEGFYGRDMAHFFSAVQAAVFGSEDCELTEELWAGAERQKLKE
FSEKLVLTATAAANTASKRTSAATKSSPSLLEQCTTPTTTSSDATKLGIG
KSVSSEGT
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mRNA from alignment at E-fasciculatus_F_contig13118:2114..3089-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13118.2362.1 ID=mRNA_E-fasciculatus_F_contig13118.2362.1|Name=mRNA_E-fasciculatus_F_contig13118.2362.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=976bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13118:2114..3089- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACGGTTTCAGGGCTAAGGCGGCGGGGCTGATGGCGATGCTCGCGGTTCG
GAGTGAGGGGTTTTACGGCAGGGACATGGCGCACTTTTTCTCGGCCGTTC
AGGTGTGAGACGCTTTGACTAAAATGGCGAAGAGCAGGCAAATGTGTACT
CGGCATGCTTTTGCGTCTTCCGAAATGCCGAAGGAGAATAGATGCAAGCG
TCCATCCCCTGGAGACACACGATGCCGTAGGTTAGTCAAACACCCTTTGA
GTGGGAGGGGGCAGCAAACTCGGAGTATATATATTTATGAACCCGGCTAC
TCTCCTCTTCGTTTACCGGCAACGACTTATTTTTTCTCCACACCTCACGT
GGCAACGTAGAAGTACTGCGAACGATCTTTCTCGCGTCTTCGATTACTTC
CACGAGTACCGAGCGTGATCCCCATGGCCAGCGGCCGGTTAGACAAGCAA
ATTCTTTGTTCCGTCGATCCTTCTCGTCATCCGTCACGGAAGCAACGATC
GAAGGGAAATGAATCGGGGTGAAACTCTTGTCCTCGCGATAATTATTAAC
GGGAGATTCACGTGGGACGCCACCATAGGACGACAAAACTTCCCACCAAG
CATGCTCACGATGACTGTCCATGCTCATTCGCCTCTTGCAAGTAAAGCGT
CGTGGATGTCCCCCACGCGGTTCGCCCGTTGTTTTCCGGCCTTGGGTTCG
ATTTCGCAAAAACACAAAAAACAGGCAGCAGTGTTCGGATCAGAGGATTG
CGAGTTAACGGAAGAACTGTGGGCCGGCGCGGAGCGCCAGAAGCTCAAAG
AGTTCTCCGAGAAGCTGGTACTGACGGCCACCGCCGCGGCCAACACCGCC
TCAAAACGAACCTCGGCAGCAACCAAGTCGTCTCCATCACTACTTGAGCA
ATGCACGACACCCACGACGACGTCAAGTGATGCCACCAAGCTCGGGATCG
GGAAGAGCGTCAGCAGCGAGGGTACA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13118:2114..3089-

>mRNA_E-fasciculatus_F_contig13118.2362.1 ID=mRNA_E-fasciculatus_F_contig13118.2362.1|Name=mRNA_E-fasciculatus_F_contig13118.2362.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=648bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13118:2114..3089- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGATGCTCGCGGTTCGGAGTGAGGGGTTTTACGGCAGGGACATGGC
GCACTTTTTCTCGGCCGTTCAGATGGCGATGCTCGCGGTTCGGAGTGAGG
GGTTTTACGGCAGGGACATGGCGCACTTTTTCTCGGCCGTTCAGGCAGCA
GTGTTCGGATCAGAGGATTGCGAGTTAACGGAAGAACTGTGGGCCGGCGC
GGAGCGCCAGAAGCTCAAAGAGTTCTCCGAGAAGCTGGTACTGACGGCCA
CCGCCGCGGCCAACACCGCCTCAAAACGAACCTCGGCAGCAACCAAGTCG
TCTCCATCACTACTTGAGCAATGCACGACACCCACGACGACGTCAAGTGA
TGCCACCAAGCTCGGGATCGGGAAGAGCGTCAGCAGCGAGGGTACAGCAG
CAGTGTTCGGATCAGAGGATTGCGAGTTAACGGAAGAACTGTGGGCCGGC
GCGGAGCGCCAGAAGCTCAAAGAGTTCTCCGAGAAGCTGGTACTGACGGC
CACCGCCGCGGCCAACACCGCCTCAAAACGAACCTCGGCAGCAACCAAGT
CGTCTCCATCACTACTTGAGCAATGCACGACACCCACGACGACGTCAAGT
GATGCCACCAAGCTCGGGATCGGGAAGAGCGTCAGCAGCGAGGGTACA
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