mRNA_E-fasciculatus_F_contig13105.2353.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13105.2353.1
Unique NamemRNA_E-fasciculatus_F_contig13105.2353.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13105.2353.1 vs. uniprot
Match: A0A6G0XXL1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XXL1_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.210e-8
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 1
Query:  127 IPISVGLGAAAGLSAPSVAAMLVPPAMSYFGVIIPGIGTMHAIGGVAATLQ 279
            + IS G+G+A    A   A  LVP AMSYFG ++PG+GT+HA GGVAATLQ
Sbjct:    8 VAISAGVGSAGVALAGVGAGALVPTAMSYFGAVVPGVGTLHAAGGVAATLQ 58          
BLAST of mRNA_E-fasciculatus_F_contig13105.2353.1 vs. uniprot
Match: A0A6G0XXQ9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XXQ9_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.400e-8
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 1
Query:  127 IPISVGLGAAAGLSAPSVAAMLVPPAMSYFGVIIPGIGTMHAIGGVAATLQ 279
            + I  G+GA   + A   A  LVP AMSYFGV++PG+GT+HA GGVAATLQ
Sbjct:    8 LTIFAGVGAVGVVLAGFGAGALVPTAMSYFGVVVPGVGTLHAAGGVAATLQ 58          
BLAST of mRNA_E-fasciculatus_F_contig13105.2353.1 vs. uniprot
Match: T0Q0J3_SAPDV (Uncharacterized protein (Fragment) n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0Q0J3_SAPDV)

HSP 1 Score: 56.2 bits (134), Expect = 8.020e-8
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 1
Query:  121 KRIPISVGLGAAAGLSAP----SVAAMLVPPAMSYFGVIIPGIGTMHAIGGVAATLQ 279
            K + I+  +G A G++AP    S AA  VP AMSYFG ++ G+GT+HA GGVAATLQ
Sbjct:   18 KNLLIAGAVGTAVGVTAPLLASSAAAAAVPTAMSYFGTVVSGVGTIHAAGGVAATLQ 74          
BLAST of mRNA_E-fasciculatus_F_contig13105.2353.1 vs. uniprot
Match: A0A8K1FH21_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FH21_PYTOL)

HSP 1 Score: 54.7 bits (130), Expect = 4.300e-7
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = 1
Query:  106 VVSGAKRIPISVGLGAAAGLSAPSVAAMLVPPAMSYFGVIIPGIGTMHAIGGVAATLQSFATTSAVTSGAVGASVAA 336
            +  G  +I     +GAAA   A   A  LVP AMS FG ++PG+GT+HA GGVAATLQ +A+ +  T+ AVG   AA
Sbjct:   22 IPEGYGKIVAGAAIGAAALPLAGVAAGALVPAAMSTFGTVVPGVGTLHAAGGVAATLQ-WASATLYTASAVGVGGAA 97          
BLAST of mRNA_E-fasciculatus_F_contig13105.2353.1 vs. uniprot
Match: A0A6A4Z5H9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z5H9_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 5.430e-7
Identity = 35/71 (49.30%), Postives = 47/71 (66.20%), Query Frame = 1
Query:  145 LGAAAGLSAPSVAAMLVPPAMSYFGVIIPGIGTMHAIGGVAATLQ----SFATTSAVTSGAVGASVAATSA 345
            +GA A  +A   A  LVP AM+YFG ++ G+GTMHA GGVAATLQ    +  +T+A T+GAV   + A +A
Sbjct:   37 IGAVALPAAGLAAGALVPAAMAYFGTVVAGVGTMHAAGGVAATLQYAVVTLVSTTAATAGAVTGLIGAAAA 107          
BLAST of mRNA_E-fasciculatus_F_contig13105.2353.1 vs. uniprot
Match: A0A1W0A9D6_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9D6_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.360e-6
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 1
Query:  175 SVAAMLVPPAMSYFGVIIPGIGTMHAIGGVAATLQ----SFATTSAVTSGA-VGASVAA 336
            +VA   VP A+SYFG +IPG+G++HA GGVAATLQ    + A++SA  SGA +GA+ AA
Sbjct:   10 AVAGAAVPVAISYFGTVIPGVGSLHAAGGVAATLQWASIALASSSAAWSGAALGAATAA 68          
BLAST of mRNA_E-fasciculatus_F_contig13105.2353.1 vs. uniprot
Match: T0Q4P0_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0Q4P0_SAPDV)

HSP 1 Score: 52.4 bits (124), Expect = 2.410e-6
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 1
Query:  148 GAAAGLSAPSV----AAMLVPPAMSYFGVIIPGIGTMHAIGGVAATLQ 279
            G A GL+AP +    AA  VP AMSYFG ++ G+GT+HA GGVAATLQ
Sbjct:   11 GGALGLAAPLLLSVGAAAAVPTAMSYFGTVVSGVGTIHAAGGVAATLQ 58          
BLAST of mRNA_E-fasciculatus_F_contig13105.2353.1 vs. uniprot
Match: A0A8K1FND2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FND2_PYTOL)

HSP 1 Score: 52.8 bits (125), Expect = 3.240e-6
Identity = 36/68 (52.94%), Postives = 44/68 (64.71%), Query Frame = 1
Query:  133 ISVGLGAAAGLSAPSVAAMLVPPAMSYFGVIIPGIGTMHAIGGVAATLQSFAT-----TSAVTSGAVG 321
            ++VGLGAAA          LVP AMS FGV++ G+GTMHA GGVAATLQ  A+     T+  + GAVG
Sbjct:   15 LAVGLGAAA----------LVPTAMSTFGVVVAGVGTMHAAGGVAATLQVAASALLSGTAIASGGAVG 72          
BLAST of mRNA_E-fasciculatus_F_contig13105.2353.1 vs. uniprot
Match: W4FC84_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FC84_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.500e-6
Identity = 35/71 (49.30%), Postives = 47/71 (66.20%), Query Frame = 1
Query:  145 LGAAAGLSAPSVAAMLVPPAMSYFGVIIPGIGTMHAIGGVAATLQ----SFATTSAVTSGAVGASVAATSA 345
            +GA A  +A   A  LVP AM+YFG ++ G+GTMHA GGVAATLQ    +  +T+A T+GAV   + A +A
Sbjct:   15 IGAVALPAAGLAAGALVPAAMAYFGTVVAGVGTMHAAGGVAATLQYAVVTLVSTTAATAGAVTGLIGAAAA 85          
BLAST of mRNA_E-fasciculatus_F_contig13105.2353.1 vs. uniprot
Match: A0A1W0A0U4_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A0U4_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 8.120e-6
Identity = 28/59 (47.46%), Postives = 39/59 (66.10%), Query Frame = 1
Query:  103 VVVSGAKRIPISVGLGAAAGLSAPSVAAMLVPPAMSYFGVIIPGIGTMHAIGGVAATLQ 279
            +V++  +++ I   +G A  L     A + VP AMSYFG I+PG+GT+HA GGVAAT Q
Sbjct:   82 IVLTTTQKVVIGAAVGTAIHLVIVCGAGVAVPYAMSYFGTIVPGVGTIHAAGGVAATSQ 140          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13105.2353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6G0XXL1_9STRA2.210e-858.82Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6G0XXQ9_9STRA4.400e-858.82Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
T0Q0J3_SAPDV8.020e-854.39Uncharacterized protein (Fragment) n=1 Tax=Saprole... [more]
A0A8K1FH21_PYTOL4.300e-748.05Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6A4Z5H9_9STRA5.430e-749.30Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A1W0A9D6_9STRA1.360e-655.93Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
T0Q4P0_SAPDV2.410e-660.42Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A8K1FND2_PYTOL3.240e-652.94Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W4FC84_9STRA3.500e-649.30Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A1W0A0U4_9STRA8.120e-647.46Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13105contigE-fasciculatus_F_contig13105:922..1299 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size378
Cds size378
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927815.3397756-CDS-E-fasciculatus_F_contig13105:921..12991622927815.3397756-CDS-E-fasciculatus_F_contig13105:921..1299Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13105 922..1299 -
1695995706.5387456-CDS-E-fasciculatus_F_contig13105:921..12991695995706.5387456-CDS-E-fasciculatus_F_contig13105:921..1299Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13105 922..1299 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13105.2353.1prot_E-fasciculatus_F_contig13105.2353.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13105 922..1299 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13105.2353.1

>prot_E-fasciculatus_F_contig13105.2353.1 ID=prot_E-fasciculatus_F_contig13105.2353.1|Name=mRNA_E-fasciculatus_F_contig13105.2353.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=126bp
MFGFEMLTSGVKDMTGSIGAMTAAVAPKAWSSLGVVVSGAKRIPISVGLG
AAAGLSAPSVAAMLVPPAMSYFGVIIPGIGTMHAIGGVAATLQSFATTSA
VTSGAVGASVAATSAIATTRAWFRW*
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mRNA from alignment at E-fasciculatus_F_contig13105:922..1299-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13105.2353.1 ID=mRNA_E-fasciculatus_F_contig13105.2353.1|Name=mRNA_E-fasciculatus_F_contig13105.2353.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=378bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13105:922..1299- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTCGGGTTTGAGATGCTGACATCTGGCGTCAAGGACATGACGGGTTC GATTGGTGCGATGACTGCAGCCGTGGCGCCTAAAGCGTGGTCCTCTCTGG GCGTCGTCGTTTCCGGGGCCAAGAGGATTCCCATTAGCGTGGGTCTGGGG GCGGCGGCTGGTTTGAGTGCACCTTCTGTAGCAGCGATGTTGGTACCGCC GGCCATGTCCTATTTTGGTGTCATTATCCCTGGTATTGGGACGATGCACG CGATCGGTGGAGTTGCGGCGACGCTACAGTCCTTCGCGACCACGTCGGCG GTAACATCGGGAGCGGTCGGTGCAAGTGTGGCAGCCACTAGCGCAATTGC GACTACACGAGCTTGGTTTAGGTGGTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13105:922..1299-

>mRNA_E-fasciculatus_F_contig13105.2353.1 ID=mRNA_E-fasciculatus_F_contig13105.2353.1|Name=mRNA_E-fasciculatus_F_contig13105.2353.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=756bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13105:922..1299- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTCGGGTTTGAGATGCTGACATCTGGCGTCAAGGACATGACGGGTTC
GATTGGTGCGATGACTGCAGCCGTGGCGCCTAAAGCGTGGTCCTCTCTGG
GCGTCGTCGTTTCCGGGGCCAAGAGGATTCCCATTAGCGTGGGTCTGGGG
GCGGCGGCTGGTTTGAGTGCACCTTCTGTAGCAGCGATGTTGGTACCGCC
GGCCATGTCCTATTTTGGTGTCATTATCCCTGGTATTGGGACGATGCACG
CGATCGGTGGAGTTGCGGCGACGCTACAGTCCTTCGCGACCACGTCGGCG
GTAACATCGGGAGCGGTCGGTGCAAGTGTGGCAGCCACTAGCGCAATTGC
GACTACACGAGCTTGGTTTAGGTGGTAAATGTTCGGGTTTGAGATGCTGA
CATCTGGCGTCAAGGACATGACGGGTTCGATTGGTGCGATGACTGCAGCC
GTGGCGCCTAAAGCGTGGTCCTCTCTGGGCGTCGTCGTTTCCGGGGCCAA
GAGGATTCCCATTAGCGTGGGTCTGGGGGCGGCGGCTGGTTTGAGTGCAC
CTTCTGTAGCAGCGATGTTGGTACCGCCGGCCATGTCCTATTTTGGTGTC
ATTATCCCTGGTATTGGGACGATGCACGCGATCGGTGGAGTTGCGGCGAC
GCTACAGTCCTTCGCGACCACGTCGGCGGTAACATCGGGAGCGGTCGGTG
CAAGTGTGGCAGCCACTAGCGCAATTGCGACTACACGAGCTTGGTTTAGG
TGGTAA
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