mRNA_E-fasciculatus_F_contig1310.2350.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1310.2350.1
Unique NamemRNA_E-fasciculatus_F_contig1310.2350.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1310.2350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1310contigE-fasciculatus_F_contig1310:8397..9199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size434
Cds size255
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1310.2350.1prot_E-fasciculatus_F_contig1310.2350.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1310 8397..9021 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927815.0252945-CDS-E-fasciculatus_F_contig1310:8396..84831622927815.0252945-CDS-E-fasciculatus_F_contig1310:8396..8483Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1310 8397..8483 +
1695995706.2954874-CDS-E-fasciculatus_F_contig1310:8396..84831695995706.2954874-CDS-E-fasciculatus_F_contig1310:8396..8483Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1310 8397..8483 +
1622927815.0369956-CDS-E-fasciculatus_F_contig1310:8853..90211622927815.0369956-CDS-E-fasciculatus_F_contig1310:8853..9021Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1310 8854..9021 +
1695995706.3054378-CDS-E-fasciculatus_F_contig1310:8853..90211695995706.3054378-CDS-E-fasciculatus_F_contig1310:8853..9021Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1310 8854..9021 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927815.0524585-UTR-E-fasciculatus_F_contig1310:9021..91991622927815.0524585-UTR-E-fasciculatus_F_contig1310:9021..9199Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1310 9022..9199 +
1695995706.317291-UTR-E-fasciculatus_F_contig1310:9021..91991695995706.317291-UTR-E-fasciculatus_F_contig1310:9021..9199Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1310 9022..9199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1310.2350.1

>prot_E-fasciculatus_F_contig1310.2350.1 ID=prot_E-fasciculatus_F_contig1310.2350.1|Name=mRNA_E-fasciculatus_F_contig1310.2350.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=85bp
TATPTGCGPLGVDGYPAADSGLFAAFYTWLQVRWARFSSQQLAVLLWSII
RVRVHEMTRERTLDRFLDSGKKRKINCAGTHFFF*
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mRNA from alignment at E-fasciculatus_F_contig1310:8397..9199+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1310.2350.1 ID=mRNA_E-fasciculatus_F_contig1310.2350.1|Name=mRNA_E-fasciculatus_F_contig1310.2350.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=803bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1310:8397..9199+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACAGCGACGCCAACCGGATGCGGACCTCTGGGCGTGGATGGATACCCTGC
CGCCGATTCTGGGCTCTTTGCTGCTTTTTACACATGGGTGAGCCGGTTCA
TCCGCTTTTTTCACAGAAAAATGGTAAATTCATCTCCGCAGATGCACTGC
CTTTGTAGACGCAGACAGGCCTCGACACACAGGGCACTGGCTTTAGTTAG
CGCGCTATGTTTCGCCGCATGCATACGGCCGCAGCAGTGGTGTGCTGAAT
GTGGCCACCCCACACCAAACTCTCAGCGCTGGTGGGTTCGGTGTTGGGTT
CGGTCGACGGACGTCCAAGCAAATAATAGTTCGTGCAACAAATAATGTGG
TGTGCAGTCTACAGGTTTGTCCTTTGTACAGTAGGCAGAAAGAAAAACCA
AAAAGTTCCTAAGACGAAGTCATCGTTACTCCTCACAAATCCTCTACTGC
TCCGTAGTTGCAGGTTCGGTGGGCTCGGTTCTCTAGTCAACAGCTTGCAG
TCCTGCTGTGGAGCATCATTCGTGTGAGGGTACACGAGATGACGAGGGAA
CGGACTTTGGATAGATTCCTAGATTCCGGGAAGAAAAGAAAAATAAACTG
TGCGGGCACGCATTTTTTTTTCTAAGTCTCAGATAGATTAGCAATGAATC
CATAGCATCAGAGGAAGGCTACTTGTTGCGTGTCCGCGATGTGCGGCACG
CATTTGCCGTTGAGAGAGATGAATATTCCTCTGCTTTACCGTGCCGCCGG
ATACGTGGTCGCAAGAAAATGATTACTCTAGCCTGGAGCCAGAAGACTTG
ACG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1310:8397..9199+

>mRNA_E-fasciculatus_F_contig1310.2350.1 ID=mRNA_E-fasciculatus_F_contig1310.2350.1|Name=mRNA_E-fasciculatus_F_contig1310.2350.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=510bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1310:8397..9199+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACAGCGACGCCAACCGGATGCGGACCTCTGGGCGTGGATGGATACCCTGC
CGCCGATTCTGGGCTCTTTGCTGCTTTTTACACATGGACAGCGACGCCAA
CCGGATGCGGACCTCTGGGCGTGGATGGATACCCTGCCGCCGATTCTGGG
CTCTTTGCTGCTTTTTACACATGGTTGCAGGTTCGGTGGGCTCGGTTCTC
TAGTCAACAGCTTGCAGTCCTGCTGTGGAGCATCATTCGTGTGAGGGTAC
ACGAGATGACGAGGGAACGGACTTTGGATAGATTCCTAGATTCCGGGAAG
AAAAGAAAAATAAACTGTGCGGGCACGCATTTTTTTTTCTAATTGCAGGT
TCGGTGGGCTCGGTTCTCTAGTCAACAGCTTGCAGTCCTGCTGTGGAGCA
TCATTCGTGTGAGGGTACACGAGATGACGAGGGAACGGACTTTGGATAGA
TTCCTAGATTCCGGGAAGAAAAGAAAAATAAACTGTGCGGGCACGCATTT
TTTTTTCTAA
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