mRNA_E-fasciculatus_F_contig131.2347.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig131.2347.1
Unique NamemRNA_E-fasciculatus_F_contig131.2347.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig131.2347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig131contigE-fasciculatus_F_contig131:19003..19411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size410
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927814.1077244-CDS-E-fasciculatus_F_contig131:19002..193291622927814.1077244-CDS-E-fasciculatus_F_contig131:19002..19329Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig131 19003..19329 +
1695995705.7413652-CDS-E-fasciculatus_F_contig131:19002..193291695995705.7413652-CDS-E-fasciculatus_F_contig131:19002..19329Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig131 19003..19329 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927814.120865-UTR-E-fasciculatus_F_contig131:19329..194111622927814.120865-UTR-E-fasciculatus_F_contig131:19329..19411Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig131 19330..19411 +
1695995705.7576888-UTR-E-fasciculatus_F_contig131:19329..194111695995705.7576888-UTR-E-fasciculatus_F_contig131:19329..19411Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig131 19330..19411 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig131.2347.1prot_E-fasciculatus_F_contig131.2347.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig131 19003..19329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig131.2347.1

>prot_E-fasciculatus_F_contig131.2347.1 ID=prot_E-fasciculatus_F_contig131.2347.1|Name=mRNA_E-fasciculatus_F_contig131.2347.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=109bp
KCLVYDGTWTRNPALLNYDGLVVNLDKGAPAWEAALLIWAVVRLRWLDQW
SKYGHWSECGGTLSVLVLASVEVTQDANTIVAVRGSGVIPETQAIRTCRR
PKIPPGRA*
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mRNA from alignment at E-fasciculatus_F_contig131:19003..19411+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig131.2347.1 ID=mRNA_E-fasciculatus_F_contig131.2347.1|Name=mRNA_E-fasciculatus_F_contig131.2347.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=409bp|location=Sequence derived from alignment at E-fasciculatus_F_contig131:19003..19411+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAATGTCTTGTTTACGATGGAACCTGGACGAGAAACCCAGCTTTATTGAA
CTACGACGGTTTGGTAGTCAACCTTGACAAGGGCGCTCCAGCGTGGGAAG
CTGCTCTTTTAATATGGGCGGTGGTCCGTCTTCGTTGGCTTGATCAATGG
TCGAAGTACGGACATTGGTCTGAATGCGGAGGGACGCTGTCAGTGTTGGT
ATTGGCCAGCGTCGAAGTTACACAGGATGCCAATACAATTGTAGCTGTCC
GCGGTAGTGGTGTGATACCGGAAACTCAAGCCATTCGAACATGCCGTCGA
CCTAAAATCCCGCCCGGCCGTGCCTAAACGTGATCTAGCAAGCGGTTTGG
GGCCGGGAGCGGACGAGATGGCTCTGTTATGGCTGTACTCTTTGTTGACG
CGTCCATCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig131:19003..19411+

>mRNA_E-fasciculatus_F_contig131.2347.1 ID=mRNA_E-fasciculatus_F_contig131.2347.1|Name=mRNA_E-fasciculatus_F_contig131.2347.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=654bp|location=Sequence derived from alignment at E-fasciculatus_F_contig131:19003..19411+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAATGTCTTGTTTACGATGGAACCTGGACGAGAAACCCAGCTTTATTGAA
CTACGACGGTTTGGTAGTCAACCTTGACAAGGGCGCTCCAGCGTGGGAAG
CTGCTCTTTTAATATGGGCGGTGGTCCGTCTTCGTTGGCTTGATCAATGG
TCGAAGTACGGACATTGGTCTGAATGCGGAGGGACGCTGTCAGTGTTGGT
ATTGGCCAGCGTCGAAGTTACACAGGATGCCAATACAATTGTAGCTGTCC
GCGGTAGTGGTGTGATACCGGAAACTCAAGCCATTCGAACATGCCGTCGA
CCTAAAATCCCGCCCGGCCGTGCCTAAAAATGTCTTGTTTACGATGGAAC
CTGGACGAGAAACCCAGCTTTATTGAACTACGACGGTTTGGTAGTCAACC
TTGACAAGGGCGCTCCAGCGTGGGAAGCTGCTCTTTTAATATGGGCGGTG
GTCCGTCTTCGTTGGCTTGATCAATGGTCGAAGTACGGACATTGGTCTGA
ATGCGGAGGGACGCTGTCAGTGTTGGTATTGGCCAGCGTCGAAGTTACAC
AGGATGCCAATACAATTGTAGCTGTCCGCGGTAGTGGTGTGATACCGGAA
ACTCAAGCCATTCGAACATGCCGTCGACCTAAAATCCCGCCCGGCCGTGC
CTAA
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