mRNA_E-fasciculatus_F_contig13095.2342.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13095.2342.1
Unique NamemRNA_E-fasciculatus_F_contig13095.2342.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13095.2342.1 vs. uniprot
Match: D7FHT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT6_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 6.640e-18
Identity = 41/43 (95.35%), Postives = 43/43 (100.00%), Query Frame = 1
Query:  178 DDPWGVVRSRALEAGRLLAAVLLSRPVGSRPVTLLGYSMGAKV 306
            DDPWGVVR+RALEAGRLLAAVLLSRPVGSRPVTLLGYSMGAK+
Sbjct:  188 DDPWGVVRTRALEAGRLLAAVLLSRPVGSRPVTLLGYSMGAKL 230          
BLAST of mRNA_E-fasciculatus_F_contig13095.2342.1 vs. uniprot
Match: A0A6H5JHC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC2_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 4.000e-17
Identity = 40/43 (93.02%), Postives = 43/43 (100.00%), Query Frame = 1
Query:  178 DDPWGVVRSRALEAGRLLAAVLLSRPVGSRPVTLLGYSMGAKV 306
            DDPWG+VR+RALEAGRLLAAVLLSRPVGSRPVTLLGYSMGAK+
Sbjct: 1032 DDPWGMVRTRALEAGRLLAAVLLSRPVGSRPVTLLGYSMGAKL 1074          
BLAST of mRNA_E-fasciculatus_F_contig13095.2342.1 vs. uniprot
Match: A0A3N4HZK4_ASCIM (DUF726-domain-containing protein n=1 Tax=Ascobolus immersus RN42 TaxID=1160509 RepID=A0A3N4HZK4_ASCIM)

HSP 1 Score: 65.9 bits (159), Expect = 2.330e-10
Identity = 29/56 (51.79%), Postives = 43/56 (76.79%), Query Frame = 1
Query:  139 ETPLLTNELLWLQDDPWGVVRSRALEAGRLLAAVLLSRPVGSRPVTLLGYSMGAKV 306
            + P+L  +L +L D+PW V   RA++AGR+LA  LL R +G+RPVTL+G+S+GA+V
Sbjct: 1172 QVPMLLTKLSYLIDNPWNVSMDRAMDAGRILADSLLHRNLGARPVTLVGFSLGARV 1227          
BLAST of mRNA_E-fasciculatus_F_contig13095.2342.1 vs. uniprot
Match: A0A4P9X2I1_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Caulochytrium protostelioides TaxID=1555241 RepID=A0A4P9X2I1_9FUNG)

HSP 1 Score: 65.1 bits (157), Expect = 3.080e-10
Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:    7 IQYLNDALQEGVDRTNSGLWSIGHPKCATPIKTSGLFHYITVLKETPLLTNELLWLQDDPWGVVRSRALEAGRLLAAVLLSRPVGSRPVTLLGYSMGAKV 306
            +Q L  AL+  V      ++  G      P+  +GL   + +LK        L +L D+PWG+  S+A +AGRLLA  L+    GSRPVTL+G+S+GA+V
Sbjct:  127 LQDLGSALRLLVSEIAGFIFQQGLHATLLPVLMAGLTGPLWMLK--------LTYLMDNPWGIGLSKAKKAGRLLADTLMQNVQGSRPVTLIGFSLGARV 218          
BLAST of mRNA_E-fasciculatus_F_contig13095.2342.1 vs. uniprot
Match: A0A1E3BSD5_9EURO (RTC4 domain-containing protein n=1 Tax=Aspergillus cristatus TaxID=573508 RepID=A0A1E3BSD5_9EURO)

HSP 1 Score: 63.2 bits (152), Expect = 2.060e-9
Identity = 37/81 (45.68%), Postives = 50/81 (61.73%), Query Frame = 1
Query:   88 ATPIKTSGLFHYI--TVLK------ETPLLTNELLWLQDDPWGVVRSRALEAGRLLAAVLLSRPVGSRPVTLLGYSMGAKV 306
            AT   T GL H +  TVL       + PL+  +L +L D+PW V  +RA  AG ++A  L+ R +G RPVTLLGYS+GA+V
Sbjct:  737 ATEALTQGLQHVLGSTVLVALMASLQLPLVLTKLSYLIDNPWNVSLARANAAGLIMADSLMDRNLGKRPVTLLGYSLGARV 817          
BLAST of mRNA_E-fasciculatus_F_contig13095.2342.1 vs. uniprot
Match: A0A0M8MYG9_9HYPO (Putative membrane protein n=1 Tax=Escovopsis weberi TaxID=150374 RepID=A0A0M8MYG9_9HYPO)

HSP 1 Score: 62.8 bits (151), Expect = 2.770e-9
Identity = 27/56 (48.21%), Postives = 42/56 (75.00%), Query Frame = 1
Query:  139 ETPLLTNELLWLQDDPWGVVRSRALEAGRLLAAVLLSRPVGSRPVTLLGYSMGAKV 306
            + P++  +L +L D+PW V   RA+ AG++LA  LL R +G+RP+TL+GYS+GA+V
Sbjct:  693 QLPVVLTKLAYLIDNPWAVSLDRAVAAGQILADSLLERSLGTRPITLVGYSLGARV 748          
BLAST of mRNA_E-fasciculatus_F_contig13095.2342.1 vs. uniprot
Match: A0A1U8QJM5_EMENI (Uncharacterized protein n=2 Tax=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) TaxID=227321 RepID=A0A1U8QJM5_EMENI)

HSP 1 Score: 62.4 bits (150), Expect = 3.780e-9
Identity = 29/56 (51.79%), Postives = 40/56 (71.43%), Query Frame = 1
Query:  139 ETPLLTNELLWLQDDPWGVVRSRALEAGRLLAAVLLSRPVGSRPVTLLGYSMGAKV 306
            + PL+  +L +L D+PW V  +RA  AG +LA  L+ R +G RPVTLLGYS+GA+V
Sbjct:  735 QLPLILTKLSYLIDNPWNVSLARATAAGLILADSLMDRNLGKRPVTLLGYSLGARV 790          
BLAST of mRNA_E-fasciculatus_F_contig13095.2342.1 vs. uniprot
Match: A0A2S4KP74_9HYPO (Membrane protein n=1 Tax=Tolypocladium paradoxum TaxID=94208 RepID=A0A2S4KP74_9HYPO)

HSP 1 Score: 62.4 bits (150), Expect = 3.780e-9
Identity = 27/56 (48.21%), Postives = 41/56 (73.21%), Query Frame = 1
Query:  139 ETPLLTNELLWLQDDPWGVVRSRALEAGRLLAAVLLSRPVGSRPVTLLGYSMGAKV 306
            + P++  +L +L D+PW V   RA+ AG +LA  LL R +G+RP+TL+GYS+GA+V
Sbjct:  745 QLPIVLTKLSYLIDNPWAVSLDRAMSAGLILADSLLERSLGTRPITLVGYSLGARV 800          
BLAST of mRNA_E-fasciculatus_F_contig13095.2342.1 vs. uniprot
Match: A0A0L0NMP3_TOLOC (Putative membrane protein n=1 Tax=Tolypocladium ophioglossoides (strain CBS 100239) TaxID=1163406 RepID=A0A0L0NMP3_TOLOC)

HSP 1 Score: 62.4 bits (150), Expect = 3.780e-9
Identity = 27/56 (48.21%), Postives = 41/56 (73.21%), Query Frame = 1
Query:  139 ETPLLTNELLWLQDDPWGVVRSRALEAGRLLAAVLLSRPVGSRPVTLLGYSMGAKV 306
            + P++  +L +L D+PW V   RA+ AG +LA  LL R +G+RP+TL+GYS+GA+V
Sbjct:  747 QLPIVLTKLSYLIDNPWAVSLDRAMSAGLILADSLLERSLGTRPITLVGYSLGARV 802          
BLAST of mRNA_E-fasciculatus_F_contig13095.2342.1 vs. uniprot
Match: A0A136IWG3_9PEZI (Uncharacterized protein n=1 Tax=Microdochium bolleyi TaxID=196109 RepID=A0A136IWG3_9PEZI)

HSP 1 Score: 62.4 bits (150), Expect = 3.790e-9
Identity = 27/56 (48.21%), Postives = 43/56 (76.79%), Query Frame = 1
Query:  139 ETPLLTNELLWLQDDPWGVVRSRALEAGRLLAAVLLSRPVGSRPVTLLGYSMGAKV 306
            + P+L  ++ +L D+PW V + RA  AG++LA  L++R +G+RPVTL+GYS+GA+V
Sbjct:  766 QIPILMAKITYLIDNPWAVSQDRAWAAGQILADSLIARNLGTRPVTLVGYSLGARV 821          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13095.2342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHT6_ECTSI6.640e-1895.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHC2_9PHAE4.000e-1793.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3N4HZK4_ASCIM2.330e-1051.79DUF726-domain-containing protein n=1 Tax=Ascobolus... [more]
A0A4P9X2I1_9FUNG3.080e-1038.00Uncharacterized protein (Fragment) n=1 Tax=Cauloch... [more]
A0A1E3BSD5_9EURO2.060e-945.68RTC4 domain-containing protein n=1 Tax=Aspergillus... [more]
A0A0M8MYG9_9HYPO2.770e-948.21Putative membrane protein n=1 Tax=Escovopsis weber... [more]
A0A1U8QJM5_EMENI3.780e-951.79Uncharacterized protein n=2 Tax=Emericella nidulan... [more]
A0A2S4KP74_9HYPO3.780e-948.21Membrane protein n=1 Tax=Tolypocladium paradoxum T... [more]
A0A0L0NMP3_TOLOC3.780e-948.21Putative membrane protein n=1 Tax=Tolypocladium op... [more]
A0A136IWG3_9PEZI3.790e-948.21Uncharacterized protein n=1 Tax=Microdochium bolle... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13095contigE-fasciculatus_F_contig13095:237..542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue2e-14
Seed eggNOG ortholog2880.D7FHT6
Preferred nameTMCO4
KEGG koko:K14773
GOsGO:0003674,GO:0003824,GO:0005575,GO:0006810,GO:0008150,GO:0016020,GO:0016021,GO:0016192,GO:0016298,GO:0016787,GO:0016788,GO:0031224,GO:0044425,GO:0051179,GO:0051234
EggNOG free text desc.Protein of unknown function (DUF726)
EggNOG OGsKOG2385@1,KOG2385@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Exons1
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927813.8447506-CDS-E-fasciculatus_F_contig13095:236..5421622927813.8447506-CDS-E-fasciculatus_F_contig13095:236..542Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13095 237..542 +
1695995705.6509187-CDS-E-fasciculatus_F_contig13095:236..5421695995705.6509187-CDS-E-fasciculatus_F_contig13095:236..542Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13095 237..542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13095.2342.1prot_E-fasciculatus_F_contig13095.2342.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13095 237..542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13095.2342.1

>prot_E-fasciculatus_F_contig13095.2342.1 ID=prot_E-fasciculatus_F_contig13095.2342.1|Name=mRNA_E-fasciculatus_F_contig13095.2342.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=102bp
FGIQYLNDALQEGVDRTNSGLWSIGHPKCATPIKTSGLFHYITVLKETPL
LTNELLWLQDDPWGVVRSRALEAGRLLAAVLLSRPVGSRPVTLLGYSMGA
KV
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mRNA from alignment at E-fasciculatus_F_contig13095:237..542+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13095.2342.1 ID=mRNA_E-fasciculatus_F_contig13095.2342.1|Name=mRNA_E-fasciculatus_F_contig13095.2342.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=306bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13095:237..542+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTTGGTATACAGTACTTGAACGACGCACTTCAAGAGGGCGTTGACAGGAC GAACTCTGGACTGTGGTCTATTGGACACCCAAAATGTGCCACACCCATAA AAACAAGCGGCTTGTTCCATTACATTACAGTATTAAAAGAAACACCACTC TTGACGAATGAACTGCTTTGGTTGCAGGATGACCCCTGGGGGGTGGTGAG GAGCCGCGCTCTAGAGGCTGGTCGATTGCTGGCGGCGGTGCTGCTGTCGA GGCCCGTGGGGTCTAGGCCTGTCACTCTCCTGGGATACTCGATGGGGGCT AAGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13095:237..542+

>mRNA_E-fasciculatus_F_contig13095.2342.1 ID=mRNA_E-fasciculatus_F_contig13095.2342.1|Name=mRNA_E-fasciculatus_F_contig13095.2342.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=612bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13095:237..542+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTTGGTATACAGTACTTGAACGACGCACTTCAAGAGGGCGTTGACAGGAC
GAACTCTGGACTGTGGTCTATTGGACACCCAAAATGTGCCACACCCATAA
AAACAAGCGGCTTGTTCCATTACATTACAGTATTAAAAGAAACACCACTC
TTGACGAATGAACTGCTTTGGTTGCAGGATGACCCCTGGGGGGTGGTGAG
GAGCCGCGCTCTAGAGGCTGGTCGATTGCTGGCGGCGGTGCTGCTGTCGA
GGCCCGTGGGGTCTAGGCCTGTCACTCTCCTGGGATACTCGATGGGGGCT
AAGGTGTTTGGTATACAGTACTTGAACGACGCACTTCAAGAGGGCGTTGA
CAGGACGAACTCTGGACTGTGGTCTATTGGACACCCAAAATGTGCCACAC
CCATAAAAACAAGCGGCTTGTTCCATTACATTACAGTATTAAAAGAAACA
CCACTCTTGACGAATGAACTGCTTTGGTTGCAGGATGACCCCTGGGGGGT
GGTGAGGAGCCGCGCTCTAGAGGCTGGTCGATTGCTGGCGGCGGTGCTGC
TGTCGAGGCCCGTGGGGTCTAGGCCTGTCACTCTCCTGGGATACTCGATG
GGGGCTAAGGTG
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