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Homology
BLAST of mRNA_E-fasciculatus_F_contig1309.2337.1 vs. uniprot
Match: D7FVT8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT8_ECTSI) HSP 1 Score: 489 bits (1260), Expect = 1.850e-168 Identity = 247/258 (95.74%), Postives = 252/258 (97.67%), Query Frame = 1
Query: 154 MGERRVVLEVQARDGRRLNIETALPGGECTPTTTLKLTLPGLDPSEAASPAASFLRLNRDPANFLLGYLLPDTWLEVEQACRAGRVAVASSGCWTDKGVGDGQGKAVYVRRRRALNRVSRAFQDLRRFARSPASVFNPGATLADTMNAEQRTGVLFPDEARASFLLFDGQARSGWLRSEGVIGGFELLSLAESVDLMLEEACFRGESGPPPEFVPLANRRNSNEWLAAEVGGGRVCVIKPLSRPKVVASSWSHYLRVQ 927
MGERRVVLEVQARDGRRLNIETALPGGECTPTTTLKLTLP L SEAASPAASFLRLNRDPAN LLGYL P++WLEVEQACRAGRVAVASSGCWTDKGVGDGQGKAVYVR+RRAL+RVS AFQDLRRFARSP+SVFNPGATLADTMNAEQRTGVLFPDEARASFLLFDGQARSGWLRSEGVIGGFELLSLAESVDLMLEEACFRGESGPPPEFVPLANRRNSNEWLAAEVGGGRVCVIKPLSRPKVVASSWSHYLRVQ
Sbjct: 1 MGERRVVLEVQARDGRRLNIETALPGGECTPTTTLKLTLPALARSEAASPAASFLRLNRDPANLLLGYLAPESWLEVEQACRAGRVAVASSGCWTDKGVGDGQGKAVYVRQRRALHRVSGAFQDLRRFARSPSSVFNPGATLADTMNAEQRTGVLFPDEARASFLLFDGQARSGWLRSEGVIGGFELLSLAESVDLMLEEACFRGESGPPPEFVPLANRRNSNEWLAAEVGGGRVCVIKPLSRPKVVASSWSHYLRVQ 258
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-01_002100.1 |
| Exons | 3 |
| Model size | 1912 |
| Cds size | 777 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1309.2337.1 >prot_E-fasciculatus_F_contig1309.2337.1 ID=prot_E-fasciculatus_F_contig1309.2337.1|Name=mRNA_E-fasciculatus_F_contig1309.2337.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=259bp
MGERRVVLEVQARDGRRLNIETALPGGECTPTTTLKLTLPGLDPSEAASP
AASFLRLNRDPANFLLGYLLPDTWLEVEQACRAGRVAVASSGCWTDKGVG
DGQGKAVYVRRRRALNRVSRAFQDLRRFARSPASVFNPGATLADTMNAEQ
RTGVLFPDEARASFLLFDGQARSGWLRSEGVIGGFELLSLAESVDLMLEE
ACFRGESGPPPEFVPLANRRNSNEWLAAEVGGGRVCVIKPLSRPKVVASS
WSHYLRVQ* back to topmRNA from alignment at E-fasciculatus_F_contig1309:4325..7284+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1309.2337.1 ID=mRNA_E-fasciculatus_F_contig1309.2337.1|Name=mRNA_E-fasciculatus_F_contig1309.2337.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2960bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1309:4325..7284+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGTTTGCGCACCGCCGTGTTCCTGCTGTCGCTGCGAGTCGGCTGTGTGGC
TTGTCTCTCGAACGCGCGGGAGGTACATCCTCGAGGAGGAGACCATCCGC
ACCCTCTGTCACCGAGCTTACCACCCTTTACGTCAAGCAAGTGCTGCGCT
GCGATGGGAGAAAGACGCGTCGTCCTGGAGGTGCAAGCTCGGGACGGCAG
GAGGTTGAACATCGAGACGGCTCTGCCGGGGGGAGAGTGCACACCGACAA
CAACGCTCAAGCTCACCCTTCCCGGGCTGGACCCTTCCGAGGCCGCCTCT
CCGGCCGCCTCCTTCCTCAGACTTAACAGAGATCCCGCCAATTTCCTCTT
GGGCTATCTTCTCCCAGACACTTGGCTGGAGGTGGAACAGGCCTGCAGAG
CGGGACGAGTCGCGGTTGCGTCCTCCGGGTGCTGGACGGACAAAGGGGTG
GGAGACGGGCAAGGGAAGGCGGTCTACGTGCGCCGGCGGCGGGCGTTGAA
CCGCGTCTCCAGAGCGTTCCAGGTGCGGCAGCGAATACACCTCCTTCTTG
CGTTCATGTTTAAACGCGGAATTTGCTGCGGAAGAACTCTGTCGTTTGGT
CTCTTCGCGCACTCTTGTATGTGCAAAGGTCCAAGTACAAGTAGTCAGCG
CCTCGCGACTACATACATCTGTAGGCCAGCACATCGTCCGCACGCAGGGT
CCCGTAAGGCCAAGACTTGGTGCCATCGTGGCGCAAGCCTGGTGCTGCCG
GGGTACGGTGATGATTCGTCTTGGCAATCACACGCAAGCGAAAATGGTAC
ATAGTCTTTGTTGCTAACCTTAACCATGAATATATTGTATCGGTTGGGAG
CACATCGCAGTCGCCGCTCTCCGCAACTCGGCGGGTCAAGCATCACACCG
GCAAGTGTCCATCACTGGCGTGTCCTCGCCCAACAGGTGGTGAACTCCGA
CTTTCTCTCCTCCCCAATGTCTCCCTCTCGCTATTTCTCTCTTCCTCCCC
GTGAGAAGGACCTCCGCCGTTTTGCGCGTTCCCCGGCCAGCGTGTTCAAC
CCCGGCGCGACGCTGGCGGACACGATGAACGCCGAGCAGCGGACGGGGGT
ATTGTTCCCGGACGAAGCCAGGGCGTCTTTCCTCCTGTTCGACGGCCAGG
CTCGCTCTGGATGGCTGCGCTCGGAGGTGCGCAGTTACGCGGAAGGTCTT
GTCTAGTGTGTCGCCGGCAGCAATGCTTCTTCGCTGTTGATTTTTCGGCG
AATCAATACTATTTCTCGTTAATATTGCGTGTCAAGACGAGATCTGATCT
CAAATGTTTCGAAGACGTGTACTCTTCTTCAACTCGTTGCTCGGCCTGCC
ATGCAGATCACCTCGATTTCTCCGTCAACCACCACAGAAGGTGCACCGTA
CCCACAGCTCTACGGAGGGAGTAACCTTGTCGAGGCTGCGGCTGCAGCCT
TTCGAGAGCTGCCGGCCGAGAAAGCTAAACCGCCACGGGCAAGACAGCTA
TCCCCTGTAGCGACAAGCCCTTCTCCGGAAAGGCGGCGTGTCCATGCCGT
CGCTGGCAGTTGCTCATGCTACCCTTGCTGCCCCGCCCTCTTGTTTGTGC
CGCTCGTGACATCCGTACATCCCTCCTCTTCCTCTTCCCCACCGCTTCTC
GGTCTATGGTCTAACGACTACGGCATGCATGATACTGAAATCACCCCCCC
CCCACCGCTTCTCCTCCGGGTGTTAACTTCCGGTGCAGGGCGTTATCGGC
GGATTCGAGCTCCTCTCGCTCGCGGAATCCGTGGACCTCATGCTGGAGGA
GGCGTGCTTCCGTGGCGAGTCGGGACCTCCGCCGGAGTTCGTGCCGCTGG
CGAACCGCAGAAATAGCAACGAGTGGCTTGCGGCAGAGGTGGGCGGGGGG
AGAGTGTGCGTGATCAAGCCGCTCAGCAGACCCAAGGTGGTCGCGAGCTC
CTGGTCCCACTACCTCCGCGTGCAGTAGAAGTGCGCGATGCGATGTGATT
TTCCACACAAAGAGATTGTAGCTTGCCCCGCGATAGGTGATGGGCGCTTT
TTGTATATGTACAAAATTTTATGTAGATGGCTGCTGTAGTCTTGAGGATG
CTGTCGGCTTGTAGATAGCGCGGCAGACGGAAACGGCCAGACCACGCTCT
CCCCCATGTGTTTCGAAGGTCGGCCAGCCCATGTATCTGCGGAGTTGCAT
TGGGCAGTTTTGTAGAAAATGTATAGGAGTAGTTTGACTTGGCGGAATTA
CCTAGCACCTGGTTGGTTTTTGATTATTTCGTTTTGTTTTCCCGCTGCCG
GCAAGACGGCTAGCGCTTGTCCTCTGCGCCGTGCACGTTTTTGGTTGAAG
ATTGTAAGGGTGAACAATGGGGTTTTGTGTTTGTAAATATGCATGTGGCG
ACAATCCGTGGCGGTCTCGCCTCTACCTGTGGTTTCTAAACTGCATCACC
CTCAAAGAATATGATGAGGAAGGGTATATACATGTTTTGATAGGCTGCTG
CCGTCGACTCTCCCCGGATTCTGGCTTTATGTTTTTCGTGGACTTCGACA
CACGGGCGTTGTCGTTGGAGTAGGAGGCCGCGACGTACTTCGAACATCTC
GTTTCGACGCGTGGTCACGGTTGCCATGTGCAAGTTGATGCCCAGTGCAC
GTGTTCCGTACGATCCGCTTTGTACGCATTCTCTGACGACGTACCGTACC
AATCTCCAACCTCGGTTTGTACCCGAAATGTCGATGATCTTAGTGGAACT
ACATGTAAAGGCGGAGCTAGCAACGCAGGAGTGTTCGCTAGGACTCAACA
GGCGTGTACCTATATTGCGGTAGAACACGTCTGGTCGAAAGAGGCAATGC
CATGTTCCGCTCTGCAACGTTTCTAGTGTGTCCCGGTTTGTTCGAATGGT
GACCGGACACACTCTCAACCGCAAAACGGTGCGGGGAGAGCGGGGAGAGG
AAAATTGTGG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1309:4325..7284+ >mRNA_E-fasciculatus_F_contig1309.2337.1 ID=mRNA_E-fasciculatus_F_contig1309.2337.1|Name=mRNA_E-fasciculatus_F_contig1309.2337.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1554bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1309:4325..7284+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGAGAAAGACGCGTCGTCCTGGAGGTGCAAGCTCGGGACGGCAGGAG
GTTGAACATCGAGACGGCTCTGCCGGGGGGAGAGTGCACACCGACAACAA
CGCTCAAGCTCACCCTTCCCGGGCTGGACCCTTCCGAGGCCGCCTCTCCG
GCCGCCTCCTTCCTCAGACTTAACAGAGATCCCGCCAATTTCCTCTTGGG
CTATCTTCTCCCAGACACTTGGCTGGAGGTGGAACAGGCCTGCAGAGCGG
GACGAGTCGCGGTTGCGTCCTCCGGGTGCTGGACGGACAAAGGGGTGGGA
GACGGGCAAGGGAAGGCGGTCTACGTGCGCCGGCGGCGGGCGTTGAACCG
CGTCTCCAGAGCGTTCCAGATGGGAGAAAGACGCGTCGTCCTGGAGGTGC
AAGCTCGGGACGGCAGGAGGTTGAACATCGAGACGGCTCTGCCGGGGGGA
GAGTGCACACCGACAACAACGCTCAAGCTCACCCTTCCCGGGCTGGACCC
TTCCGAGGCCGCCTCTCCGGCCGCCTCCTTCCTCAGACTTAACAGAGATC
CCGCCAATTTCCTCTTGGGCTATCTTCTCCCAGACACTTGGCTGGAGGTG
GAACAGGCCTGCAGAGCGGGACGAGTCGCGGTTGCGTCCTCCGGGTGCTG
GACGGACAAAGGGGTGGGAGACGGGCAAGGGAAGGCGGTCTACGTGCGCC
GGCGGCGGGCGTTGAACCGCGTCTCCAGAGCGTTCCAGGACCTCCGCCGT
TTTGCGCGTTCCCCGGCCAGCGTGTTCAACCCCGGCGCGACGCTGGCGGA
CACGATGAACGCCGAGCAGCGGACGGGGGTATTGTTCCCGGACGAAGCCA
GGGCGTCTTTCCTCCTGTTCGACGGCCAGGCTCGCTCTGGATGGCTGCGC
TCGGAGGACCTCCGCCGTTTTGCGCGTTCCCCGGCCAGCGTGTTCAACCC
CGGCGCGACGCTGGCGGACACGATGAACGCCGAGCAGCGGACGGGGGTAT
TGTTCCCGGACGAAGCCAGGGCGTCTTTCCTCCTGTTCGACGGCCAGGCT
CGCTCTGGATGGCTGCGCTCGGAGGGCGTTATCGGCGGATTCGAGCTCCT
CTCGCTCGCGGAATCCGTGGACCTCATGCTGGAGGAGGCGTGCTTCCGTG
GCGAGTCGGGACCTCCGCCGGAGTTCGTGCCGCTGGCGAACCGCAGAAAT
AGCAACGAGTGGCTTGCGGCAGAGGTGGGCGGGGGGAGAGTGTGCGTGAT
CAAGCCGCTCAGCAGACCCAAGGTGGTCGCGAGCTCCTGGTCCCACTACC
TCCGCGTGCAGTAGGGCGTTATCGGCGGATTCGAGCTCCTCTCGCTCGCG
GAATCCGTGGACCTCATGCTGGAGGAGGCGTGCTTCCGTGGCGAGTCGGG
ACCTCCGCCGGAGTTCGTGCCGCTGGCGAACCGCAGAAATAGCAACGAGT
GGCTTGCGGCAGAGGTGGGCGGGGGGAGAGTGTGCGTGATCAAGCCGCTC
AGCAGACCCAAGGTGGTCGCGAGCTCCTGGTCCCACTACCTCCGCGTGCA
GTAG back to top
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