mRNA_E-fasciculatus_F_contig13080.2331.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13080.2331.1
Unique NamemRNA_E-fasciculatus_F_contig13080.2331.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13080.2331.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI)

HSP 1 Score: 499 bits (1286), Expect = 1.560e-176
Identity = 232/264 (87.88%), Postives = 241/264 (91.29%), Query Frame = 1
Query:    1 MLDSSGNKLTAPTSVTKRWLLEAELYVTDGAIFYCIGSDEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGRAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCRDLSNPDVFETTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNLMHDNFQYGFDPHDDSDYLTIANNKVYNNHNHGIIASKRCNNXXXXXXEVYDGGPDAVGIFLHRSSDNAEVYG 792
            MLD SGNK+T+PTSVTK+WLLE+ELYVTDGAIFYCIGS+EGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDG+AKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFC+DLSNPDVFETTNVYGDIKNS+IHHMYYGMYSYGHQGGVWTNN MHDN QYGFDPHDDSDYLTIA             ASKRCNN      EV DGGP+AVGIFLHRSSDNAEVYG
Sbjct:    1 MLDDSGNKITSPTSVTKKWLLESELYVTDGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKDLSNPDVFETTNVYGDIKNSNIHHMYYGMYSYGHQGGVWTNNEMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXASKRCNNVQIYNNEVSDGGPEAVGIFLHRSSDNAEVYG 264          
BLAST of mRNA_E-fasciculatus_F_contig13080.2331.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE)

HSP 1 Score: 481 bits (1239), Expect = 6.580e-168
Identity = 229/275 (83.27%), Postives = 240/275 (87.27%), Query Frame = 1
Query:    1 MLDSSGNKLTAPTSVTKRWLLEAELYVTDGAIFYCIGSDEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGRAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVR---------GFCRDLSNPDVFETTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNLMHDNFQYGFDPHDDSDYLTIANNKVYNNHNHGIIASKRCNNXXXXXXEVYDGGPDAVGIFLHRSSDNAEVYGKK 798
            MLD SG+K+TAPTSVTK+WLLEAELYVT+GAIFYCIGS+EGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNK+PQETYEGGRSFLNCVSEKLTGETCDG AKND GECRMDIINSEMGYMGFFD+ESYGLTWKVR         GFC+DLSNPDVFETTNVYGDIKNSDIHHMYYG YSYGHQGGVWTNN MHDN QY            +ANNKVYNN+NHGIIASKRCNN      +V DGGPDAVGIFLHRSSDNAEVYG K
Sbjct:   46 MLDGSGSKITAPTSVTKKWLLEAELYVTNGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKDLSNPDVFETTNVYGDIKNSDIHHMYYGHYSYGHQGGVWTNNEMHDNHQY------------VANNKVYNNYNHGIIASKRCNNVKIYDNQVSDGGPDAVGIFLHRSSDNAEVYGNK 308          
BLAST of mRNA_E-fasciculatus_F_contig13080.2331.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 434 bits (1117), Expect = 5.540e-144
Identity = 195/263 (74.14%), Postives = 222/263 (84.41%), Query Frame = 1
Query:    1 MLDSSGNKLTAPTSVTKRWLLEAELYVTDGAIFYCIGSDEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGRAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCRDLSNPDVFETTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNLMHDNFQYGFDPHDDSDYLTIANNKVYNNHNHGIIASKRCNNXXXXXXEVYDGGPDAVGIFLHRSSDNAEVY 789
            MLD  G KL  P+ +T  WLL AELY+T G +FYC G+  GGDC++LRIQSTG DD++EVRGHGGS+YF  T+VTSWDTPNK+PQETYE GRSFLNCVSEKLTG+ C+G AKN+ GECRMDIINSE+ Y+G+FD+ESYG+TWKVRGFC+DLSNP+VFE TNVYGD+  SDIHH+YYG YSYGHQGGVWTNN MHDN+QYGFDPHDDSDYLTIA N+VYNN NHGIIASKRCNN      EV DGG  A GIFLHRSSD A V+
Sbjct:  473 MLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKDLSNPEVFELTNVYGDLTGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTIAYNEVYNNVNHGIIASKRCNNVKIFENEVRDGGAAAAGIFLHRSSDGAAVF 735          
BLAST of mRNA_E-fasciculatus_F_contig13080.2331.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE)

HSP 1 Score: 401 bits (1030), Expect = 8.990e-138
Identity = 186/271 (68.63%), Postives = 214/271 (78.97%), Query Frame = 1
Query:    1 MLDSSGNKLTAPTSVTKRWLLEAELYVTDGAIFYCIGSDEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGRAKNDEGECRMDIINSEMGYMGFFDAESYGLTWK--------VRGFCRDLSNPDVFETTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNLMHDNFQYGFDPHDDSDYLTIANNKVYNNHNHGIIASKRCNNXXXXXXEVYDGGPDAVGIFLHRSSDNAEVY 789
            MLD  G KL  P+ +T  WLL AELY+T G +FYC G+  GGDC++LRIQSTG DD++EVRGHGGS+YF  T+VTSWDTPNK+PQETYEGGRSFLNCVSEKLTG+ C+G AKN+ GECRMDIINSE+ Y+G+FD+ESYG+TWK        VRGFC+DLSNP+VF+ TNVYGD+  SDIHH+YYG YSYGHQGGVWTNN MHDN+QYGFDPHDDSDYLT             IIASKRCNN      EV DGG  AVGIFLHRSSD+A V+
Sbjct:   22 MLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKDLSNPEVFDLTNVYGDLIGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTR------------IIASKRCNNVKIFENEVRDGGAAAVGIFLHRSSDDAAVF 280          
BLAST of mRNA_E-fasciculatus_F_contig13080.2331.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 399 bits (1024), Expect = 1.810e-134
Identity = 187/262 (71.37%), Postives = 209/262 (79.77%), Query Frame = 1
Query:    4 LDSSGNKLTAPTSVTKRWLLEAELYVTDGAIFYCIGSDEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGRAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCRDLSNPDVFETTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNLMHDNFQYGFDPHDDSDYLTIANNKVYNNHNHGIIASKRCNNXXXXXXEVYDGGPDAVGIFLHRSSDNAEVY 789
            LD S N +  P  ++ +WLL AEL++T GA+FYC GS  GGDCDELRIQSTGP D++EVR HGGSMYF  T+VTSWDTPNK PQ TY GGRSFLNCVSEKLTGE C G+A+N+ GECRMDIINSE+GY+G+FD+ESYGLTWKVRGFC+DLSNPDVF+TTNVYG++  SDIHH YYG YSYGHQGGVW NN MHDN QYGFDPHDDSDYLT             IIASKRCNN      EVYDGGP A GIFLHRSSD A V+
Sbjct:  111 LDDSYNTVLNPKVLSNKWLLTAELHITGGAVFYCRGSSIGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKDLSNPDVFDTTNVYGNLIGSDIHHNYYGQYSYGHQGGVWHNNQMHDNHQYGFDPHDDSDYLT------------SIIASKRCNNVQIYNNEVYDGGPFAAGIFLHRSSDYAIVH 360          
BLAST of mRNA_E-fasciculatus_F_contig13080.2331.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 390 bits (1001), Expect = 4.830e-132
Identity = 182/265 (68.68%), Postives = 211/265 (79.62%), Query Frame = 1
Query:    1 MLDSSGNKLTAPTSVTKRWLLEAELYVTDGAIFYCIGSDEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGE-TCDGRAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCRDLSNPDVFETTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNLMHDNFQYGFDPHDDSDYLTIANNKVYNNHNHGIIASKRCNNXXXXXXEVYDGGPDAVGIFLHRSSDNAEVYG 792
            +LDS+       T+ T +WLL A+L+VT GA  YC G   GG+C ELRI+ST   D++E+RGHGG++YF  T+VTSWD   +KPQETY+ GRSF+ CVSE LTGE TC   A N+ GECRMDII+SEMGY+G+  +E+YG+TWKVRGFC DLSNPDVF+  NVYGD+K SDIHHMYYGMYS+GHQGGVWTNNLMHDN QYGFDPHDDSDYL IA NKVYNN NHGIIASKRCNN      EVYDGG DA GIFLHRS D++EVYG
Sbjct:   35 VLDSNDRVDETATTTTGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDTC---AINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPDVFDDVNVYGDMKGSDIHHMYYGMYSFGHQGGVWTNNLMHDNHQYGFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYG 296          
BLAST of mRNA_E-fasciculatus_F_contig13080.2331.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 321 bits (823), Expect = 1.110e-100
Identity = 160/266 (60.15%), Postives = 189/266 (71.05%), Query Frame = 1
Query:    1 MLDSSGNKLTAPTSVTKRWLLEAELYVTDGAIFYCIGSDEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTG--ETCDGRAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCRDLSNPDVFETTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNLMHDNFQYGFDPHDDSDYLTIANNKVYNNHNHGIIASKRCNNXXXXXXEVYDGGPDAVGIFLHRSSDNAEVYG 792
            +LDS+ N +    S T  WLL  +++V +G++    G D GGD   LRIQSTG  D+YE+RGHGGS+ F  T VTSWDT  KK    Y+  RSF+ CVSE+L    +TCDG A N  GECRMDII SEMG MG+  AESYG++WKVRG+C +  NP+VFE T V GDI +SDI+ MYYG YS+GH GG+WT N MHDN QYGFDPHDDSD L IA N V+ N NHGIIASKRCNN       VYDGG  AVGIFLHRSSD+ EV+G
Sbjct:  428 VLDSNDNVVGG--SPTGYWLLMRDIHVEEGSLLQVHGPDAGGDARVLRIQSTGSRDYYEIRGHGGSLSFMDTKVTSWDTDEKKVNTNYKKERSFIRCVSEELADKPDTCDGHAVNHMGECRMDIIRSEMGEMGYDAAESYGISWKVRGYCSEDPNPEVFERTRVRGDIIDSDIYGMYYGHYSFGHDGGIWTGNKMHDNAQYGFDPHDDSDNLEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHRSSDDCEVWG 691          
BLAST of mRNA_E-fasciculatus_F_contig13080.2331.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI)

HSP 1 Score: 304 bits (779), Expect = 4.830e-99
Identity = 151/262 (57.63%), Postives = 182/262 (69.47%), Query Frame = 1
Query:   13 SGNKLTAPTSVTKRWLLEAELYVTDGAIFYCIGSDEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGE--TCDGRAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCRDLSNPDVFETTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNLMHDNFQYGFDPHDDSDYLTIANNKVYNNHNHGIIASKRCNNXXXXXXEVYDGGPDAVGIFLHRSSDNAEVYG 792
            SGN     TS T  WLL  ELYV DG      GS+ GGD DELR+ ST  + +  +R HGGS+ F  T V SWDT    P E    GRS+++ +SE +T E  TC+G AKN  GE RMDI +SE+GY+G++D+ESYGLTWKVRGFC D SNP+VF+  NVYG++ +SDIHHM +G+Y+YGHQ G W  N MHDN  YGFDPHDDSD+LTI +N+VYNN  HGIIASKRCN       EVY G   + GIFLHRSSD+A V G
Sbjct:   92 SGN---VSTSATGTWLLTEELYVEDGITLEVYGSEAGGDADELRLLSTN-ETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKG 349          
BLAST of mRNA_E-fasciculatus_F_contig13080.2331.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 304 bits (779), Expect = 1.090e-97
Identity = 151/262 (57.63%), Postives = 182/262 (69.47%), Query Frame = 1
Query:   13 SGNKLTAPTSVTKRWLLEAELYVTDGAIFYCIGSDEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGE--TCDGRAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCRDLSNPDVFETTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNLMHDNFQYGFDPHDDSDYLTIANNKVYNNHNHGIIASKRCNNXXXXXXEVYDGGPDAVGIFLHRSSDNAEVYG 792
            SGN     TS T  WLL  ELYV DG      GS+ GGD DELR+ ST  + +  +R HGGS+ F  T V SWDT    P E    GRS+++ +SE +T E  TC+G AKN  GE RMDI +SE+GY+G++D+ESYGLTWKVRGFC D SNP+VF+  NVYG++ +SDIHHM +G+Y+YGHQ G W  N MHDN  YGFDPHDDSD+LTI +N+VYNN  HGIIASKRCN       EVY G   + GIFLHRSSD+A V G
Sbjct:   92 SGN---VSTSATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTN-ETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKG 349          
BLAST of mRNA_E-fasciculatus_F_contig13080.2331.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 303 bits (776), Expect = 3.450e-97
Identity = 148/251 (58.96%), Postives = 178/251 (70.92%), Query Frame = 1
Query:   46 TKRWLLEAELYVTDGAIFYCIGSDEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGE--TCDGRAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCRDLSNPDVFETTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNLMHDNFQYGFDPHDDSDYLTIANNKVYNNHNHGIIASKRCNNXXXXXXEVYDGGPDAVGIFLHRSSDNAEVYG 792
            T  WLL  ELYV DG      G+DEGGD DELR+ ST  + +  +R HGGS+ F  T V SWDT    P E    GRS+++ VSE +T E  TC+G AKN  GE RMDI NSE+GY+GF D+ESYGLTWKVRGFC+D SNP++F+  NVYG++ +SDIHH+ +G+Y+YGHQ G W  N MHDN  YGFDPHDDSD+LTI +N+VYNN  HGIIASKRCN       EVY G   + GIFLHRSSD+A V G
Sbjct:  104 TGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTS-ETYINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKG 353          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13080.2331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIU4_ECTSI1.560e-17687.88Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JGU8_9PHAE6.580e-16883.27MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LC73_ECTSI5.540e-14474.14Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
A0A6H5KWQ2_9PHAE8.990e-13868.63MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LRM4_ECTSI1.810e-13471.37Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
D7FRR8_ECTSI4.830e-13268.68Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JNF5_9PHAE1.110e-10060.15MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FXE5_ECTSI4.830e-9957.63Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G339_ECTSI1.090e-9757.63Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]
D7FXE4_ECTSI3.450e-9758.96Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13080contigE-fasciculatus_F_contig13080:247..3619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score439.9
Seed ortholog evalue8.7e-121
Seed eggNOG ortholog2880.D8LC73
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMannuronan C-5-epimerase C-terminal fragment
Ec32 orthologEc-20_002860.1
Exons6
Model size813
Cds size813
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13080.2331.1prot_E-fasciculatus_F_contig13080.2331.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13080 247..3619 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927812.4792628-CDS-E-fasciculatus_F_contig13080:246..3891622927812.4792628-CDS-E-fasciculatus_F_contig13080:246..389Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13080 247..389 -
1695995705.1350257-CDS-E-fasciculatus_F_contig13080:246..3891695995705.1350257-CDS-E-fasciculatus_F_contig13080:246..389Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13080 247..389 -
1622927812.495093-CDS-E-fasciculatus_F_contig13080:846..8821622927812.495093-CDS-E-fasciculatus_F_contig13080:846..882Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13080 847..882 -
1695995705.1491416-CDS-E-fasciculatus_F_contig13080:846..8821695995705.1491416-CDS-E-fasciculatus_F_contig13080:846..882Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13080 847..882 -
1622927812.5130193-CDS-E-fasciculatus_F_contig13080:1226..12621622927812.5130193-CDS-E-fasciculatus_F_contig13080:1226..1262Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13080 1227..1262 -
1695995705.1580977-CDS-E-fasciculatus_F_contig13080:1226..12621695995705.1580977-CDS-E-fasciculatus_F_contig13080:1226..1262Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13080 1227..1262 -
1622927812.5294802-CDS-E-fasciculatus_F_contig13080:1765..19341622927812.5294802-CDS-E-fasciculatus_F_contig13080:1765..1934Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13080 1766..1934 -
1695995705.169532-CDS-E-fasciculatus_F_contig13080:1765..19341695995705.169532-CDS-E-fasciculatus_F_contig13080:1765..1934Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13080 1766..1934 -
1622927812.5453112-CDS-E-fasciculatus_F_contig13080:2834..30861622927812.5453112-CDS-E-fasciculatus_F_contig13080:2834..3086Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13080 2835..3086 -
1695995705.1796823-CDS-E-fasciculatus_F_contig13080:2834..30861695995705.1796823-CDS-E-fasciculatus_F_contig13080:2834..3086Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13080 2835..3086 -
1622927812.5665655-CDS-E-fasciculatus_F_contig13080:3442..36191622927812.5665655-CDS-E-fasciculatus_F_contig13080:3442..3619Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13080 3443..3619 -
1695995705.1893282-CDS-E-fasciculatus_F_contig13080:3442..36191695995705.1893282-CDS-E-fasciculatus_F_contig13080:3442..3619Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13080 3443..3619 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13080.2331.1

>prot_E-fasciculatus_F_contig13080.2331.1 ID=prot_E-fasciculatus_F_contig13080.2331.1|Name=mRNA_E-fasciculatus_F_contig13080.2331.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=271bp
MLDSSGNKLTAPTSVTKRWLLEAELYVTDGAIFYCIGSDEGGDCDELRIQ
STGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSE
KLTGETCDGRAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCRD
LSNPDVFETTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNLMHDNFQYG
FDPHDDSDYLTIANNKVYNNHNHGIIASKRCNNVKIYNNEVYDGGPDAVG
IFLHRSSDNAEVYGKKKEKK*
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mRNA from alignment at E-fasciculatus_F_contig13080:247..3619-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13080.2331.1 ID=mRNA_E-fasciculatus_F_contig13080.2331.1|Name=mRNA_E-fasciculatus_F_contig13080.2331.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3373bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13080:247..3619- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTGGACAGCTCCGGCAACAAGCTGACGGCCCCGACGTCCGTGACCAA GCGGTGGCTCTTGGAGGCCGAGCTCTACGTTACTGACGGGGCGATCTTCT ACTGCATCGGGAGCGACGAGGGGGGGGACTGCGACGAGCTCCGCATCCAG TCGACCGGTCCGGACGACTGGTATGAGGTAAGAGCACGCTTCGCGGACGC GCATGACGGCACAGCGGAAGCTGACCCACACACGCACGCCGCAGCAGTGA AGCCGCATAAAAATAGAGGTGTAGTGTTAGTGACGAGCGCGGTAGTAATC CCAAGCAAAGCGATGAAAGCACTGCGAAACGAACGAGTGTGCAAATTAGC AGCCACAGGAGACACGTGCAGTTTTCTTTTGTTGCTACCGCTTCTGTCAT TAACCTAGAGAGTGCCTTAGCCGCCCCCCATGACGGTCGGAGGGTAAGCG CTGTCGATGCCAAATGACAAGGACACCACACTACGTGTGTTTGTTTTCCA CGCCGCCGGTCCGGCGTTTTCCTTCCCCGAAAGGTGCGCGGGCACGGCGG CAGCATGTACTTCAGCCACACCGTGGTGACCTCTTGGGACACCCCGAACA AGAAGCCGCAGGAGACCTACGAGGGCGGCCGCTCCTTCCTCAACTGCGTG TCCGAGAAGCTCACCGGGGAGACGTGCGACGGCAGGGCCAAGAACGACGA GGGGGAGTGCCGCATGGACATCATCAACTCCGAGATGGGCTACATGGGCT TCTTCGACGCGGAGTCGTACGGCCTCACCTGGAAGGTGCGGCGGCAGGCG GTGTATGCAGCACAGCAGTGGTCATGGCTCCGATATAAGAGGATCGAAAT CGGTTGTCACGGACTCGACCCACGATAGTAAAGTTGGGTACCGTCTCTCT CCGGTATAATAAGAGGGGGCTCCGACACAATGAGGGTCGAGGTGTGTTTG TCACACCACCCCCTTTAACGGAGCCACGGCTGTATGTGTATTTGTCGAAC GACCACCACCCCCCTCGTGGCGTTGTACACCCCGCCACTTGAGAAAATCC GGGAGCTATGTAAGAAAATTAGAAACTTCGCTCTCAAGGAGGAACCAACG TTATACTGTACACACACCCCTAAAGGCATCCGCGTCAGTTGGACCAGTAG TAGTAGTAGTAGTAGTAGTAGTAGCATGGATGTTGGAAGGTACTGGGTGG AGGGAGACCTGAACGGTTGCTATTGTGAAGACAACAACAACTAGGATAAC AGGCGCTCGGCAAAAGACATGCTATACTTCAGACCTGTGTTGAAGCCGAG ATATCGGTTTCCTCCCACAGAGAGACCAGGAAACACGCCTGGGGCCAAAG TAAGAGGTTGTGGAAGTGGTGGCGCCCTCTGCTCATGTGCGTACGACATC GGCTCGACAAAACGATCAAAGGGAAAGAAGCCAGACTTGCCCTTCGTATA AAGTCCACGGCCGCCCGACCCAATCGCATCGTAGTCGTCAATACCAAAGA GCGTACCCGCCCGCCCTTCCCAGCACGGACGGCTGGTTGGTCCTTCCGCC CACAAGAACGCGTATCGGTAGCTTGCTGTACTGTGCCGGGGCTGGTGCTC GGCAGTAGAGGCTACAACGCGTCTGACCCTTCCTTTGTCTTGACACCAAA ACATGGCGCTTCGCTTCTCCTTCGTCTTGTCACAGGTCCGCGGTTTCTGC AGGGACCTGTCCAACCCCGACGTGTTCGAGACCACGAACGTCTACGGGGA CATCAAGAACTCCGACATCCACCACATGTACTACGGCATGTACAGCTACG GCCACCAGGGGGGCGTGTGGACCAACAACCTGATGCACGACAACTTCCAG TACGGTGAGACGGCAAGCTCTGCGAACGACGACAGCGCAGGCTTCGAATA TCGAGGGGGCGTACGTTGTTGTTGTTGTTGTTGTTGTTTCCATGGAAAAT AACGTGTCTGGCCAGCCCAGAAGCAGGCGTACGCTGTGTTGTTCTCTTCA TCCACATGGAAAAATATCGTCTCTGACTTGCCTAGTTGGCTGCAATGGCC AGCCCTTGTGGGTTTTTCGGTCACACGGCTCGTGGAACGCTTGCCTTACG ACCCTTGGGGCTGGGCTTTACCTTCCACGTGTGCACCGCAATCCCGAGAA ACGATTCGTATCACGATAACGCCGACGGCGGTTGATTCCGACCCGTTGCG ACCGCCATGGTTGCAGTTTTCGAACCCCTTTCGCCGCGGTGCCCGTACTA GTCTAAATATAAGGCCTCCCATTTTCCTCGTCGTTGCTCTTCTCCGTCCG TCTGCCCTGTTCGTCATCGCCCTCGTCGCATGGGATTCGGATATCATATC ATGTCAGGATTCGACCCCCACGACGACTCCGACTACCTCACGAGTGAGTC GTCGTCGTCGTTGTTGCTGTTGCTGTTGTTGATGTCTTCACCTAAAAAAC CGTTCCGGTCTACGCTCAGTACCTGGTATCATTACCCGTCTGGTCTAGAT TTTATGCATGGACAAAAAAAAAACTGACTGCTACGACGAGCCTAGAATAC TCTTCGCGAAAACCTCACGACTCCTGTGCGAAGGCTGTCAAATAAAAGGT CGCTTTCATGAGAAGAACGTTGCCCCCGCTCATCTGCGTCGCCAGTCTAC TTTTTTCTGATCACGCGGTACTCCACCCGTTGCTTGTCCTTGCCTGTTTC CCTCGATTCCTTTGTCGTCTATTCTTCGCCACCGCAGTCGCCAACAACAA GGTGTACAACAACCATAACCACGGTAAGCCCGCACGCGTCGCTGTCGTCG TTGTGGTCCTATTTCTTCACCTGGTGGCATGAAAAGCCACTCGAGTCGTC TTCTCGCTGATTGGCTGATGATGCGGGAGGAAGCATAGTGTGGCATTACA ACGAACGAAGCGAAGATATACTGCTCCTCCTCCTCCTGCTGTTGCGTCCG AATCGCACGCTTGCCATCGTTTTTCATGCCTTCGAGGGCGTTCAGTGTTC GCAAATCTACCCTCCGCGCTTCGCCCTAAAACCAGTCAGTGACTGGTTGT GCTAACAGTCCTTGGTACAAAACGCGGTCCTTGTTTGTCGCAGCCCGTAA CGATCGCGATCGTCGATCCCAAGCAGGCCGATTCCTCTTTTTTTCGGCGC TACACCAGTACATAACATGTGACTTGACTCTTCTTCCCCCGTGGACTCAC AAATATTTCAATGACTGACGCCTTTCGCAGGTATCATCGCCTCCAAGCGC TGCAACAACGTTAAGATCTACAACAACGAGGTCTACGATGGCGGGCCTGA CGCCGTCGGCATTTTCCTCCACCGCAGCTCCGACAACGCGGAGGTCTACG GTAAGAAAAAAGAAAAAAAATGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13080:247..3619-

>mRNA_E-fasciculatus_F_contig13080.2331.1 ID=mRNA_E-fasciculatus_F_contig13080.2331.1|Name=mRNA_E-fasciculatus_F_contig13080.2331.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1626bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13080:247..3619- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTGGACAGCTCCGGCAACAAGCTGACGGCCCCGACGTCCGTGACCAA
GCGGTGGCTCTTGGAGGCCGAGCTCTACGTTACTGACGGGGCGATCTTCT
ACTGCATCGGGAGCGACGAGGGGGGGGACTGCGACGAGCTCCGCATCCAG
TCGACCGGTCCGGACGACTGGTATGAGATGCTGGACAGCTCCGGCAACAA
GCTGACGGCCCCGACGTCCGTGACCAAGCGGTGGCTCTTGGAGGCCGAGC
TCTACGTTACTGACGGGGCGATCTTCTACTGCATCGGGAGCGACGAGGGG
GGGGACTGCGACGAGCTCCGCATCCAGTCGACCGGTCCGGACGACTGGTA
TGAGGTGCGCGGGCACGGCGGCAGCATGTACTTCAGCCACACCGTGGTGA
CCTCTTGGGACACCCCGAACAAGAAGCCGCAGGAGACCTACGAGGGCGGC
CGCTCCTTCCTCAACTGCGTGTCCGAGAAGCTCACCGGGGAGACGTGCGA
CGGCAGGGCCAAGAACGACGAGGGGGAGTGCCGCATGGACATCATCAACT
CCGAGATGGGCTACATGGGCTTCTTCGACGCGGAGTCGTACGGCCTCACC
TGGAAGGTGCGCGGGCACGGCGGCAGCATGTACTTCAGCCACACCGTGGT
GACCTCTTGGGACACCCCGAACAAGAAGCCGCAGGAGACCTACGAGGGCG
GCCGCTCCTTCCTCAACTGCGTGTCCGAGAAGCTCACCGGGGAGACGTGC
GACGGCAGGGCCAAGAACGACGAGGGGGAGTGCCGCATGGACATCATCAA
CTCCGAGATGGGCTACATGGGCTTCTTCGACGCGGAGTCGTACGGCCTCA
CCTGGAAGGTCCGCGGTTTCTGCAGGGACCTGTCCAACCCCGACGTGTTC
GAGACCACGAACGTCTACGGGGACATCAAGAACTCCGACATCCACCACAT
GTACTACGGCATGTACAGCTACGGCCACCAGGGGGGCGTGTGGACCAACA
ACCTGATGCACGACAACTTCCAGTACGGTCCGCGGTTTCTGCAGGGACCT
GTCCAACCCCGACGTGTTCGAGACCACGAACGTCTACGGGGACATCAAGA
ACTCCGACATCCACCACATGTACTACGGCATGTACAGCTACGGCCACCAG
GGGGGCGTGTGGACCAACAACCTGATGCACGACAACTTCCAGTACGGATT
CGACCCCCACGACGACTCCGACTACCTCACGAGATTCGACCCCCACGACG
ACTCCGACTACCTCACGATCGCCAACAACAAGGTGTACAACAACCATAAC
CACGTCGCCAACAACAAGGTGTACAACAACCATAACCACGGTATCATCGC
CTCCAAGCGCTGCAACAACGTTAAGATCTACAACAACGAGGTCTACGATG
GCGGGCCTGACGCCGTCGGCATTTTCCTCCACCGCAGCTCCGACAACGCG
GAGGTCTACGGTAAGAAAAAAGAAAAAAAATGAGTATCATCGCCTCCAAG
CGCTGCAACAACGTTAAGATCTACAACAACGAGGTCTACGATGGCGGGCC
TGACGCCGTCGGCATTTTCCTCCACCGCAGCTCCGACAACGCGGAGGTCT
ACGGTAAGAAAAAAGAAAAAAAATGA
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