mRNA_E-fasciculatus_F_contig1308.2330.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-fasciculatus_F_contig1308.2330.1
Unique Name	mRNA_E-fasciculatus_F_contig1308.2330.1
Type	mRNA
Organism	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)

Homology

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BLAST of mRNA_E-fasciculatus_F_contig1308.2330.1 vs. uniprot
Match: A0A6H5L3P9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3P9_9PHAE)

HSP 1 Score: 496 bits (1276), Expect = 6.070e-173
Identity = 258/289 (89.27%), Postives = 266/289 (92.04%), Query Frame = 1

Query:    1 GSPSIDYFFSADVMEHPDRTTMLPEDDPYSEQVVLFGGQGIWYPIPVLPSELAPPPRPQTTTDPPSTTVVLPTPQDPIPAKEAASWSAAHDTITARGGGSAGDMGLSWGGRASDRALETYNAASTRAPRERARSVLRAELKNRIGIGQNSVVYMCAQSLFKLHPDFDLAVKGVLEASSSNHLVFTAGRRQQWTSILQARLTSTLGDGLMARVFFVPRTVSGAAFSSLLASADVVLHPFPFGGSKTSADALAVGVPTVSMAGKYVAGRMAQSFYKTMGMQHVCCVATDVA 867
            GSP+IDYF SAD MEHPDRTTMLP+DDPYSEQVVLFGGQGIWYP PVLPSELAPPPRPQTT+   STT VL TPQ PI A E ASWSAAHDTITA+GGGSAG+MG SWGG AS+RALETY+AASTRA RERARS LRAELKNR GIGQNSVVYMCAQSLFKLHPDFDLAVKGVLEAS SNHLVFTAGRRQQWTSI  ARL STLGD LM RVFFVPRTVSGAAFSSLLASADV+LHPFPFGGSKTSADALAVGVPTVSMAGKYVAGRMAQSFYKTMGMQHVCCVATDVA
Sbjct:   98 GSPNIDYFLSADAMEHPDRTTMLPDDDPYSEQVVLFGGQGIWYPAPVLPSELAPPPRPQTTSYTASTTGVLQTPQVPILAPETASWSAAHDTITAKGGGSAGEMGSSWGGPASERALETYHAASTRASRERARSALRAELKNRFGIGQNSVVYMCAQSLFKLHPDFDLAVKGVLEASGSNHLVFTAGRRQQWTSIFHARLNSTLGDDLMTRVFFVPRTVSGAAFSSLLASADVMLHPFPFGGSKTSADALAVGVPTVSMAGKYVAGRMAQSFYKTMGMQHVCCVATDVA 386

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BLAST of mRNA_E-fasciculatus_F_contig1308.2330.1 vs. uniprot
Match: D7FK41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK41_ECTSI)

HSP 1 Score: 434 bits (1116), Expect = 1.550e-148
Identity = 232/281 (82.56%), Postives = 241/281 (85.77%), Query Frame = 1

Query:    1 GSPSIDYFFSADVMEHPDRTTMLPEDDPYSEQVVLFGGQGIWYPIPVLPSELAPPPRPQTTTDPPSTTVVLPTPQDPIPAKEAASWSAAHDTITARGGGSAGDMGLSWGGRASDRALETYNAASTRAPRERARSVLRAELKNRIGIGQNSVVYMCAQSLFKLHPDFDLAVKGVLEASSSNHLVFTAGRRQQWTSILQARLTSTLGDGLMARVFFVPRTVSGAAFSSLLASADVVLHPFPFGGSKTSADALAVGVPTVSMAGKYVAGRMAQSFYKTMGMQHV 843
            GSP+IDYF SADVMEHPDRTTMLP+DDPYSEQVVLFGGQGIWYP PVLPSELAPPPRPQT++   STT                      DTITA+GG SA +M  SWGG ASDRALETY+AA TRA RERARSVLRAELKNRIGI QNSVVYMCAQSLFKLHPDFDLAVKGVLEAS SNHLVFTAGRRQQWTSI QARLTSTLGD +M RVFFVPRTVSGAAFSSLLASADVVLHPFPFGGSKTSADALAVGVPTVSMAGKYVAGRMAQSFYKTMGMQ +
Sbjct:   93 GSPNIDYFLSADVMEHPDRTTMLPDDDPYSEQVVLFGGQGIWYPTPVLPSELAPPPRPQTSSGAASTTAXXXXXXXXXXXXXXXXXXXXRDTITAKGGVSAAEMESSWGGPASDRALETYHAAPTRASRERARSVLRAELKNRIGIDQNSVVYMCAQSLFKLHPDFDLAVKGVLEASGSNHLVFTAGRRQQWTSIFQARLTSTLGDDVMTRVFFVPRTVSGAAFSSLLASADVVLHPFPFGGSKTSADALAVGVPTVSMAGKYVAGRMAQSFYKTMGMQQL 373

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BLAST of mRNA_E-fasciculatus_F_contig1308.2330.1 vs. uniprot
Match: A0A7S3K5W7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K5W7_9STRA)

HSP 1 Score: 214 bits (545), Expect = 3.690e-58
Identity = 137/347 (39.48%), Postives = 179/347 (51.59%), Query Frame = 1

Query:   13 IDYFFSADVMEHPDRTTMLPEDDPYSEQVVLFGGQGIWYPIPVLPSELAPPPRPQTTTDPPSTTVVLPTPQDPIPAKEAASWSAAHDTITARGGGSAGDMGLSWGGRASDRALETYNAASTRAPRERARSVLRAELKNRIGIGQNSVVYMCAQSLFKLHPDFDLAVKGVLEASSSNHLVFTAGRRQQWTSILQARLTSTLGDGLM-ARVFFVPRTVSGAAFSSLLASADVVLHPFPFGGSKTSADALAVGVPTVSMAGKYVAGRMAQSFYKTMGMQHV--CCVATDVASYVQLATRLGQDFGFRKRIIDIIDRRQWVLWERRDEVFEWARFLARIGGVSPPIPQEVG 1044
            IDY+ SAD+ME P+RT + P  +PYSEQ+VL  GQGIWY             RP+   D       L  P +P   ++AA                    GL +G                                       N  + +C QSLFKLHP+FD  ++ +LEA+S   ++FT GRR++WT++L+ARL + LGD L   R+ F+PR   G+AF  L+A ADV+LHPFPFGGS+TS+D LAVGVP V+     + GRMA SFY TM M +   C VA +   YVQ   RL  D   R R+   I  R   +WE    V+EWAR LAR+ G   P P+EVG
Sbjct:  570 IDYYISADIMEAPERTKLPPSLEPYSEQLVLLQGQGIWYR------------RPEYMND----NFTLLAPGEPGRFEQAARLRTEL-------------FGLPYG---------------------------------------NYTLLLCPQSLFKLHPEFDTLIRKILEATSEAKVLFTQGRRERWTAVLEARLRNALGDQLYHERLLFLPRQPPGSAFMRLVALADVMLHPFPFGGSRTSSDGLAVGVPVVTRPTTNLRGRMAASFYLTMEMTNPEWCLVAENSEQYVQFVARLANDHEHRARVAAAIRERSPRIWEHHQYVYEWARLLARVAGRPAPTPEEVG 848

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BLAST of mRNA_E-fasciculatus_F_contig1308.2330.1 vs. uniprot
Match: A0A6S8RMR4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8RMR4_9STRA)

HSP 1 Score: 205 bits (521), Expect = 4.610e-55
Identity = 139/352 (39.49%), Postives = 174/352 (49.43%), Query Frame = 1

Query:    1 GSPSIDYFFSADVMEHPDRTTMLPEDDPYSEQVVLFGGQGIWYPIPVLPSELAPPPRPQTTTDPPSTTVVLPTPQDPIPAKEAASWSAAHDTITARGGGSAGDMGLSWGGRASDRALETYNAASTRAPRERARSVLRAELKNRIGIGQNS-VVYMCAQSLFKLHPDFDLAVKGVLEASSSNHLVFTAGRRQQWTSILQARLTSTLGDGLMARVFFVPRTVSGAAFSSLLASADVVLHPFPFGGSKTSADALAVGVPTVSMAGKYVAGRMAQSFYKTMGM--QHVCCVATDVASYVQLATRLGQDFGFRKRIIDIIDRRQWVLWERRDEVFEWARFLARIGGVSPPIPQEVGL 1047
            G  SIDYF SAD MEHP RT      D +SEQVVL  GQGIWY  P +P  L                        P P +EAA        + AR                                               +G+ Q    + +C QS+FKLHP FD  V+ +LEA+++  +VFTAGRRQ WT +L +RL  TLG    +R  FVPR + GA +  LLA ADV+LHPFPFGGS+TSAD LA+GVP V      +  RMA SFY +MG+  ++   VA+    YV  A RL  D   R+ +   +  RQ V+WE R  V  WARFLAR+ G  P  P +VGL
Sbjct:  621 GRSSIDYFVSADRMEHPYRTLA---GDEWSEQVVLLDGQGIWYRRPSIPEGL------------------------PYPNREAA--------VAAR---------------------------------------------QALGLPQGDWPLLLCPQSVFKLHPHFDTVVRRILEATTNARVVFTAGRRQAWTKVLVSRLEKTLGP-YKSRCAFVPRQMPGADYYKLLAVADVLLHPFPFGGSRTSADGLALGVPVVVRPTTQLRCRMAYSFYASMGLTQKNWTLVASTTNDYVSFAARLANDVEHRRTVAAAVAARQHVIWEDRSVVLGWARFLARVSGQRPVAPADVGL 891

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BLAST of mRNA_E-fasciculatus_F_contig1308.2330.1 vs. uniprot
Match: A0A7S3ZLD0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZLD0_9STRA)

HSP 1 Score: 205 bits (521), Expect = 5.860e-55
Identity = 139/352 (39.49%), Postives = 174/352 (49.43%), Query Frame = 1

Query:    1 GSPSIDYFFSADVMEHPDRTTMLPEDDPYSEQVVLFGGQGIWYPIPVLPSELAPPPRPQTTTDPPSTTVVLPTPQDPIPAKEAASWSAAHDTITARGGGSAGDMGLSWGGRASDRALETYNAASTRAPRERARSVLRAELKNRIGIGQNS-VVYMCAQSLFKLHPDFDLAVKGVLEASSSNHLVFTAGRRQQWTSILQARLTSTLGDGLMARVFFVPRTVSGAAFSSLLASADVVLHPFPFGGSKTSADALAVGVPTVSMAGKYVAGRMAQSFYKTMGM--QHVCCVATDVASYVQLATRLGQDFGFRKRIIDIIDRRQWVLWERRDEVFEWARFLARIGGVSPPIPQEVGL 1047
            G  SIDYF SAD MEHP RT      D +SEQVVL  GQGIWY  P +P  L                        P P +EAA        + AR                                               +G+ Q    + +C QS+FKLHP FD  V+ +LEA+++  +VFTAGRRQ WT +L +RL  TLG    +R  FVPR + GA +  LLA ADV+LHPFPFGGS+TSAD LA+GVP V      +  RMA SFY +MG+  ++   VA+    YV  A RL  D   R+ +   +  RQ V+WE R  V  WARFLAR+ G  P  P +VGL
Sbjct:  621 GRSSIDYFVSADRMEHPYRTLA---GDEWSEQVVLLDGQGIWYRRPSIPEGL------------------------PYPNREAA--------VAAR---------------------------------------------QALGLPQGDWPLLLCPQSVFKLHPHFDTVVRRILEATTNARVVFTAGRRQAWTKVLVSRLEKTLGP-YKSRCAFVPRQMPGADYYKLLAVADVLLHPFPFGGSRTSADGLALGVPVVVRPTTQLRCRMAYSFYASMGLTQKNWTLVASTTNDYVSFAARLANDVEHRRTVAAAVAARQHVIWEDRSVVLGWARFLARVSGQRPVAPADVGL 891

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BLAST of mRNA_E-fasciculatus_F_contig1308.2330.1 vs. uniprot
Match: D7FUH1_ECTSI (Putative methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH1_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 4.670e-46
Identity = 100/214 (46.73%), Postives = 135/214 (63.08%), Query Frame = 1

Query:  469 QSLFKLHPDFDLAVKGVLEASSSN-----------------HLVFTAGRRQQWTSILQARLTSTLGDGLMARVFFVPRTVSGAAFSSLLASADVVLHPFPFGGSKTSADALAVGVPTVSMAGKYVAGRMAQSFYKTMGMQHV----CCVATDVASYVQLATRLGQDFGFRKRIIDIIDRRQWVLWERRDEVFEWARFLARIGGVSPPIPQEVGL 1047
            QSLFKL PDFDL ++ +L A ++N                 +LV T GRR+ WT     RL+S++ + ++ +V  +PR  +G  F + LASADV+LHPFPFGGSKT+AD LA+GVP V+M G  + GRMA S YKTMG++      CC+A    SYV+LA RLG+D  +R+   ++I +R   LWERRD + EWARFL+R  G   P  +EV L
Sbjct:  613 QSLFKLKPDFDLVLRDILLAVNNNQNNGQMPNGEKENKNKAYLVLTEGRRKLWTEAFWRRLSSSVPE-VLPQVKILPRMSAGKEFRTFLASADVILHPFPFGGSKTAADGLALGVPVVAMEGDALPGRMAFSLYKTMGLERPGDGGCCIAKSRDSYVELAVRLGRDAEYRRWAGNLIGQRSSALWERRDVLLEWARFLSRAAGRISPTAEEVNL 825

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BLAST of mRNA_E-fasciculatus_F_contig1308.2330.1 vs. uniprot
Match: A0A835YUZ8_9STRA (Glyco_transf_41 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUZ8_9STRA)

HSP 1 Score: 167 bits (424), Expect = 4.210e-42
Identity = 92/206 (44.66%), Postives = 126/206 (61.17%), Query Frame = 1

Query:  421 KNRIGIGQNSVVYMCAQSLFKLHPDFDLAVKGVLEASSSNHLVFTAGRRQQWTSILQARLTSTLGDGLMARVFFVPRTVSGAAFSSLLASADVVLHPFPFGGSKTSADALAVGVPTVSMAGKYVAGRMAQSFYKTMGM--QHVCCVAT----DVASYVQLATRLGQDFGFRKRIIDIIDRRQWVLWERRDEVFEWARFLARIGGVS 1020
            K ++G+  +SV++M AQ++FK HP FD A+  +L      H+V   G+R+ WT +   RL+ TLG  LM RV  V RT SG+ +  L+A ADV+LHPFPFGGS+TS D   VG P V+MA   + GRMA +FY TMG+  + VC   T     +  Y+ LAT+LGQD  +R  +   I R   ++WER+D V EW  FL R   +S
Sbjct:  647 KAQLGMEPDSVLFMSAQAVFKYHPLFDDAIAQLLRRDQRFHVVLQEGQRKTWTQVYMGRLSQTLGPELMRRVHLVTRTNSGSDYLRLIAGADVLLHPFPFGGSRTSTDGFQVGTPVVTMATDQLRGRMAAAFYTTMGLDTEMVCPYDTVHKRHIQCYLDLATKLGQDQSYRAAMTHRIRRNIHLIWERQDVVDEWTSFLRRAHRLS 852

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BLAST of mRNA_E-fasciculatus_F_contig1308.2330.1 vs. uniprot
Match: A0A485KTM2_9STRA (Aste57867_11675 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KTM2_9STRA)

HSP 1 Score: 165 bits (418), Expect = 1.590e-41
Identity = 95/197 (48.22%), Postives = 116/197 (58.88%), Query Frame = 1

Query:  415 ELKNRIGIGQNSV--VYMCAQSLFKLHPDFDLAVKGVLEASSSNHLVFTAGRRQQWTSILQARLTSTLGDGLMARVFFVPRTVSGAAFSSLLASADVVLHPFPFGGSKTSADALAVGVPTVSMAGKYVAGRMAQSFYKTMGMQHVCCVATDVASYVQLATRLGQDFGFRKRIIDIIDRRQWVLWERRDEVFEWARFL 999
            EL  R   G N+   +YMCAQS++KL P FD  V+ VL   S+ H+VF   R   WT   Q RL + L   +  RV F PR     A+  LL+ ADVVLHPFPFGGSKTSADAL +G+P V+M   ++  RMA SFYK M  Q + CVAT  A YV +A RLG D  F   +   I   Q  +WE R+ V EW RFL
Sbjct:  618 ELNQRSAYGLNATWTIYMCAQSVYKLLPAFDAIVRDVLARDSAGHVVFLEARHASWTEQFQRRLFAALPPEVHHRVHFTPRAGGSLAYLKLLSVADVVLHPFPFGGSKTSADALLLGLPMVAMKTPFLRSRMAYSFYKHM--QVLECVATTDAEYVDIAVRLGTDRSFHDEMARRIRASQESIWENREVVAEWERFL 812

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BLAST of mRNA_E-fasciculatus_F_contig1308.2330.1 vs. uniprot
Match: A0A7S1UEU8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UEU8_9STRA)

HSP 1 Score: 162 bits (411), Expect = 1.640e-40
Identity = 116/346 (33.53%), Postives = 150/346 (43.35%), Query Frame = 1

Query:    1 GSPSIDYFFSADVMEHPDRTTMLPEDDPYSEQVVLFGGQGIWYPIPVLPSELAPPPRPQTTTDPPSTTVVLPTPQDPIPAKEAASWSAAHDTITARGGGSAGDMGLSWGGRASDRALETYNAASTRAPRERARSVLRAELKNRIGIGQNSVVYMCAQSLFKLHPDFDLAVKGVLEASSSNHLVFTAGRRQQWTSILQARLTSTLGDGLMA---RVFFVPRTVSGAAFSSLLASADVVLHPFPFGGSKTSADALAVGVPTVSMAGKYVAGRMAQSFYKTMGMQHVC-CVATDVASYVQLATRLGQDFGFRKRIIDIIDRRQWVLWERRDEVFEWARFLARIGGVSPP 1026
            G+PSIDYF SAD ME   RT + P+ DPYSEQVVL GGQGIWY +P                                                                          N  S   PRE              G+ ++  +Y   Q +FKLHP FD AV  VL       +VF AG+R QWT +L+ARL   +     A   R+ FVPR  +   +  L++  D+VLHPFPFGGS+TSADA+A G+P V      + GRMA S+Y TMG + V   VA DV  +   A  L  +         +I+  +  +W     V EW  F++R  G S P
Sbjct:  103 GNPSIDYFVSADRMEFAKRTRVSPDLDPYSEQVVLLGGQGIWYDVPFR-----------------------------------------------------------------------ANLTSDVEPREE------------FGLPKDKTLYFVGQGVFKLHPVFDEAVAQVLAGDPDGVVVFLAGQRPQWTEMLKARLLPLVRATCGACGDRILFVPRQGTAIGYQRLVSCVDIVLHPFPFGGSRTSADAIAFGIPMVVFPTMSLRGRMAVSYYSTMGPELVKRLVAGDVQDFADKALALSLNQSHYADTKKLIEDTRASIWNDAKTVQEWTDFISRAVGASLP 365

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BLAST of mRNA_E-fasciculatus_F_contig1308.2330.1 vs. uniprot
Match: A0A1W0AC99_9STRA (TPR repeat-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AC99_9STRA)

HSP 1 Score: 157 bits (398), Expect = 5.890e-39
Identity = 81/189 (42.86%), Postives = 114/189 (60.32%), Query Frame = 1

Query:  433 GIGQNSVVYMCAQSLFKLHPDFDLAVKGVLEASSSNHLVFTAGRRQQWTSILQARLTSTLGDGLMARVFFVPRTVSGAAFSSLLASADVVLHPFPFGGSKTSADALAVGVPTVSMAGKYVAGRMAQSFYKTMGMQHVCCVATDVASYVQLATRLGQDFGFRKRIIDIIDRRQWVLWERRDEVFEWARFL 999
            G+ +N  +Y+CAQS+FKL PDFD  +  +L +  + HLVF   R++ WT   Q RL  +    ++ R+ F+PR      +  LL+ A +VLHPFPFGGSKTSA+ALA+G+P V M   Y+  RMA ++Y  MGM    C+A+    Y+ LA RLG +  +R  I   I  R  +LW+ +  V EW RFL
Sbjct:  557 GLQENWTIYLCAQSVFKLLPDFDQVLGSILSSDPNGHLVFVEARQRAWTLQFQDRLKRSFPISILQRIHFLPRVAGHEPYMRLLSMATIVLHPFPFGGSKTSAEALALGIPVVVMQTPYLRCRMAAAYYIHMGMSD--CIASTQEDYINLAIRLGTNQTYRAMISSKIQARAPMLWQNQQVVDEWERFL 743

The following BLAST results are available for this feature:

BLAST of mRNA_E-fasciculatus_F_contig1308.2330.1 vs. uniprot

BLAST of mRNA_E-fasciculatus_F_contig1308.2330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L3P9_9PHAE	6.070e-173	89.27	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FK41_ECTSI	1.550e-148	82.56	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A7S3K5W7_9STRA	3.690e-58	39.48	Hypothetical protein n=1 Tax=Aureoumbra lagunensis...	[more]
A0A6S8RMR4_9STRA	4.610e-55	39.49	Hypothetical protein n=1 Tax=Pelagomonas calceolat...	[more]
A0A7S3ZLD0_9STRA	5.860e-55	39.49	Hypothetical protein n=1 Tax=Pelagomonas calceolat...	[more]
D7FUH1_ECTSI	4.670e-46	46.73	Putative methyltransferase n=1 Tax=Ectocarpus sili...	[more]
A0A835YUZ8_9STRA	4.210e-42	44.66	Glyco_transf_41 domain-containing protein n=1 Tax=...	[more]
A0A485KTM2_9STRA	1.590e-41	48.22	Aste57867_11675 protein n=1 Tax=Aphanomyces stella...	[more]
A0A7S1UEU8_9STRA	1.640e-40	33.53	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]
A0A1W0AC99_9STRA	5.890e-39	42.86	TPR repeat-containing protein n=1 Tax=Thraustothec...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-fasciculatus_F_contig1308	contig	E-fasciculatus_F_contig1308:11553..17698 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	416.4
Seed ortholog evalue	1.4e-113
Seed eggNOG ortholog	2880.D7FK41
EggNOG OGs	2CYFD@1,2S40I@2759
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Exons	8
Model size	1127
Cds size	1077
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-fasciculatus_F_contig1308.2330.1	prot_E-fasciculatus_F_contig1308.2330.1	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	polypeptide	E-fasciculatus_F_contig1308 11592..17687 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927812.315666-UTR-E-fasciculatus_F_contig1308:11552..11591	1622927812.315666-UTR-E-fasciculatus_F_contig1308:11552..11591	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig1308 11553..11591 +
1695995705.020214-UTR-E-fasciculatus_F_contig1308:11552..11591	1695995705.020214-UTR-E-fasciculatus_F_contig1308:11552..11591	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig1308 11553..11591 +
1622927812.4304104-UTR-E-fasciculatus_F_contig1308:17687..17698	1622927812.4304104-UTR-E-fasciculatus_F_contig1308:17687..17698	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig1308 17688..17698 +
1695995705.1251605-UTR-E-fasciculatus_F_contig1308:17687..17698	1695995705.1251605-UTR-E-fasciculatus_F_contig1308:17687..17698	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig1308 17688..17698 +

The following CDS feature(s) are a part of this mRNA:

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-fasciculatus_F_contig1308:11553..17698+
coding sequence from alignment at E-fasciculatus_F_contig1308:11553..17698+

protein sequence of mRNA_E-fasciculatus_F_contig1308.2330.1

>prot_E-fasciculatus_F_contig1308.2330.1 ID=prot_E-fasciculatus_F_contig1308.2330.1|Name=mRNA_E-fasciculatus_F_contig1308.2330.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=359bp
MEHPDRTTMLPEDDPYSEQVVLFGGQGIWYPIPVLPSELAPPPRPQTTTD
PPSTTVVLPTPQDPIPAKEAASWSAAHDTITARGGGSAGDMGLSWGGRAS
DRALETYNAASTRAPRERARSVLRAELKNRIGIGQNSVVYMCAQSLFKLH
PDFDLAVKGVLEASSSNHLVFTAGRRQQWTSILQARLTSTLGDGLMARVF
FVPRTVSGAAFSSLLASADVVLHPFPFGGSKTSADALAVGVPTVSMAGKY
VAGRMAQSFYKTMGMQHVCCVATDVASYVQLATRLGQDFGFRKRIIDIID
RRQWVLWERRDEVFEWARFLARIGGVSPPIPQEVGLPPTPDHVRPLFPSR
SEPSFAQP*

mRNA from alignment at E-fasciculatus_F_contig1308:11553..17698+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-fasciculatus_F_contig1308.2330.1 ID=mRNA_E-fasciculatus_F_contig1308.2330.1|Name=mRNA_E-fasciculatus_F_contig1308.2330.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=6146bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1308:11553..17698+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGAGCCCCAGCATCGACTACTTCTTCTCTGCCGATGTGATGGAACACCC
CGACCGAACGACAATGCTGCCTGAGGACGATCCCTATTCCGAACAGGTAT
GATATGTGTAAGGAATGAACGGGAGAAGAGGTGGTGAAGGGCCTATTTTT
CTCTTGTTGGGCCCAAGGTCCTTTCATTCTTGTGGATATTGCACAAGGGG
CATTGGGTTGTCGATCTTCTCCAACTAGGTCGTCAAGCACGCGTGTTGAG
CGTAATGACCTCATGAGTCGCGTAAGGTAGGGAGCTAGCTGCCTTCAATG
TTTTATTGTGATGCGGGCTTGGACCCTATATGATCATCCCCAGCGAGGAC
AGCCTCGGACGGGCTTGGTTTTTTGCGGTGCAGTAGCAATTTCCAGAGAC
ACCTACATCGAGAAACTGGTGGGTGTCTACCAGTTGAGCATGCCTTCTTT
CGGGAAGCCCTCTTTCCCGCTCACAGAAGAGCCTGATTTGTCACCACCAG
AAGGAACAGCCACGGAACATCTTAGAGGATGGGGTACACTCAACCATTTC
TACAACAGGTTAATCGCTGGTTGAAGCTCACGTACCATCTCAGCTAGACG
ACGACATAAATGATGTCATTCCGCAGCACCCCACCCATAAAATGCCATAC
AACAGGGTTGATACGTGCGTTGTCTCCGTATCGAAAGGTTTGGCCGCACC
TCTTGAATCATTTGCGGCTAATTTCAGTCAGGGTGGCATGGGGGCGGTGC
GGTGCGGTGTAGGGGTTCAAAATTCTGCATCGAACAGCAGTGACCCTTTA
GCTGACCCGGGTCGCCGACCCACTTTCATCTGACCGTTGACGGAGGTCAA
GCACAGTGCCCAGAATACGATGTGATCTGCGGCGTGGTATATCCCGTCCG
TCCATGATTCACAGGTGGTGCTTTTCGGAGGACAAGGTATTTGGTATCCT
ATTCCTGTTCTCCCATCAGAACTGGCCCCACCACCAAGACCTCAAACCAC
TACCGACCCTCCAAGCACCACGGTAGTGTTGCCAACGCCGCAAGACCCAA
TACCGGCGAAAGAGGCGGCGTCTTGGTCTGCTGCGCATGATACTATCACG
GCGAGGGGAGGGGGTTCAGCAGGGGATATGGGGTTGTCATGGGGTGGACG
AGCAAGCGACCGGGCTCTCGAAACGTACAATGCTGCCTCAACTCGTGCGC
CGAGAGAGCGGGCCAGATCCGTCCTTCGTGCCGAGCTGAAGAACCGGATC
GGGATCGGCCAAAACAGGTATAGGACGAAATTTAGAAAGTGGGTGATTTT
CACGTTTTGCAGCAGTCCCCCCGAGCAACCTATATACCAACGCGGTGATG
TCGGGCCACCTGGCGGTATACAGGGATAAATGCCCCGTACTGCTGTGGCA
AGGGCTAACCCACTTCTGCGGTACCTTTTTTTTTTCTCCTCTTCCTTCGC
ATGAAACTCAACCGTGGTAACCAGGGAGCCTGGTGTCGGCAACACCGGTT
CCGATCGATTACTATTGCTGATTTTACGAGTCCGATGCAACGCGGTCGAT
AATCACCACCTGGCAAATGTGAATGGTCTTGCTGAGATTATTTGGCTGCA
GCAGCCTTGAAGGGAAAACCAAGTACTTAATGTTGCCATCTCGGGCGATC
TCAGAACTACTGCAGGAATAATTTCAAAAATATGTTGCGGCCTACAAACG
AGAGCTATTAGTCACTCCGATATCGTATCGCAAACGGTTGCTCTTCATGC
AAGGGGCACTGGCCAACTGAACGGTGTCCCAATGGGCATACGTTTGGCTG
TTCGAGTGTTTGGAGTTTGGGTGCTGGTTGCAGGGTGGGAAGAGTATCTG
AAGTGCGTGTACAACGATGATAGGCTAGGAACGATACAGCCATTTTTGTA
GGTGAAGCATTGTGGCAAATACCAAAGACGAAGCTGGAAAATCGCAGCGA
GCAATAACGTTGGTACGTGCAGCACGCTGCCTGGACAAGGCCGTGATTCC
AGAAGACGAGATTAAACCTCCCTGTCGCTTGTTTTTTCTTTTCTCTCCTT
CGTGGACGTATGACAGTCCGAGAAGAGGTCAAAACGGGCGAAATAAACTG
TCTCAACGGACCAACTCCGCAAACCTCCGTTTGCGCCCCTCTGTGGGTGA
AAGTTAGATACGTTTATGTGGGAATGTGGTAGTTGTAATTAATGGTGTAC
ACTGAGGCACCCAGGCAAAATGACAATTAAGCACGCCAGTTTTGCCCTCC
CTCGCATGTCAATTTCACTCGTCGTTCCAGTGTGGTGTACATGTGCGCTC
AGAGTTTGTTCAAGCTGCACCCCGACTTCGACTTAGCCGTTAAGGGCGTG
CTAGAAGCATCGAGTTCGAATCACCTGGTTTTTACAGCGGGTAGACGGCA
ACAATGGACATCGATTCTCCAAGCGAGGCTAACTTCGACGCTCGGAGATG
GTCTTATGGCGAGGGTGAGATGCAGGTGCCATACATACCCGGTTGGGGCA
AAGTACCTGATTGATTCGAGCTTTCACATGCACCAGTGGTGGTGCATCGT
ATGCTTAGCCAACTATGTGAGCACGATTGCGCCTGCAGAACTGAAAAGCA
GTTCATCACGAGGCGTATTCCAGCAACTCAATTTTAAGCCGCTACCCCCC
ACGAATATGACGAGATTCCACAACGGCATGTCAGCACCAACCTTGTGCGC
TCACCTACCCGTCATCTGTCTCTCGGATTATTTCAAATCCTTTCTCTAAT
CTCTATCTCTCTGCCTTCCTGAACGGTACTCCCGCTCTTTGCACGAGGGT
ACCACGAGGTAGTTAACAGCTGCGAAGGTGTTGGACAGGCAAAATGTTCT
CCACTGTCCTGGCAGATCTACTTTTCGAAACGTTCTGGCAAGGTGCTTTA
TATGTCGTGGAGGGTTGCACACCGATAAAAGCGACCTAAGGTTGTTCTGT
GGTCTGCGACCTTTCGCGGGGTATCTTCAACCCGCGTGCCTGGTTGCCTG
TTTGGCTGTACTACACGCAGGTATTCTTTGTGCCGCGAACAGTATCTGGT
GCAGCGTTTTCCTCCCTGCTGGCATCGGCCGACGTCGTGCTCCATCCCTT
CCCTTTTGGCGGTTCGAAGACATCGGCTGATGCACTCGCTGTTGGGGTGA
GCATGAGCAGCCAAGCTCGTAAAATGGTTGCATGTGGTGTCCAACAAAAC
GAGACCTGTATTTCAACGTTGAAGCAATGCAAATCCGAGTAGAGTGCCAT
GATCCACAAAGCCCCATATTCAGCGACCACCTAAGGGTAGTCACCAGATC
ATAGGTCCTGAAGCCAGTTGGTTCTTTTTCGTAACCTCAGCGTTTTCCAT
CACATATTTGGTCGAAGATTGGCTCAGAGGTTCGAAAAAGATACATGCTT
GTCGGTGAAGCATGGGGGTGTAGAACACATTCGTGGTCCTTCGCGATCAA
CAAGCAAGTCTACCTTTCTCTTGCGCATTAACGGAAAGTGCCCCCGCACA
ATACCTCTGATCCAGGTACCAACAGTGTCGATGGCTGGAAAGTACGTGGC
GGGACGCATGGCACAGAGTTTCTACAAGACCATGGGCATGCAACACGTGT
GCTGCGTCGCCACGGACGTTGCTAGGTGACTCATGGTGTTACAAGGCGCT
AGTCTCGTCATAGTAAATGAGTTTCGTAGCCATGCCCTCGATCATTTGAT
GCTTGTAGATCATTGCAAGGTGGCTGAATCCCACCGTGCTATTCGATTTG
AGAACAATCGCACCGTACTTCACTGAACCTCACCGCACCGTACGAGCTCG
CGCCCGATCTGGCGTTTGCAACAGAAACCAAAACGTGTCGAGTAGTGCAG
TCTCTAAGACACGCCGCTATTGTCTGCCCAAAACCCGTGCGGCTTGTCAC
GCTTTAGAAAGACTCACTGTTTGCAAGTCGCTTTCGGGAACGCCATTCGG
GTCTATTTCGGTACACAGTCTGGGAATCATCGGGGACTCTCCCAATCCCA
TTCAGTCACGCGATGCCACCTGGCGAATATCGATTGTACGAAGCCACAGA
CCAAAGGTTTCGTTCTAAGCGCGAGAAACCCTTCAACAAGCAATGCTTTC
GGTCGGTGTTGGTGAGAGCAACGAGCGGTCGACGTTCAGCCACACTTGAT
TGTTTGCACGCACTTCATGTTTGGCACTTTGTCGACACCGGCTTTCTTTC
GCCCAATGATCCTTCGCTTTGATGCGCATTCCGTCTCTCAGCTACGTGCA
ACTTGCTACGAGGCTTGGCCAGGACTTCGGGTTTCGCAAGCGTATCATCG
ATATAATTGACAGGAGGCAGTGGGTCCTCTGGGAGAGGAGGGACGAGGTA
ACTGGCCTAGAGCTTTGGGAGTTTTCTCCTGTGGAAGGTGTTAGGAAGCA
CGATGACCACTTAGACCACTTAGTTCTTCTCAACAAATGTAATGCCCGAG
TCCGTCAAGCTTTCTTTTAAGCCACGAACACGTCCCCCCCAGGGTTGTCA
TCCCTGTAGTCAGCGGTGTGCTCGCCAGACCGATACAATCAGTCCGTCGC
GTATTTTTCGAAGCCTAGTTCTTCGGGTTTGTCTCCCTCTTGCTTCGGGT
GCAAATGAAATCCTCAAATGATAAAAAAGCTCAAGAGGAGATTCGAACCC
CTGACCTTAGCTGCACATCAATGTGCTTGGTCTTAGGTGTAATGCGAAAG
CTGCGAGGCAATTTTAGAGCACCCGAGTTGTCCTCGCACACCACGGTTGC
TTCTTCCTTCTTCTGATATATGGTGTTCAGCAGGTGGCGGAAGTACTTGA
TGGTGTACCCCTTGGACAAAGCCACGACCTCTTCACTCGAAGCAGAGTTC
GTGGCTTTGTTCAAGGCGTGCAATACCATCAAGTACTTCCGCCACCTGCT
GAACACCATATCAGAAGAAGAAAGAAGCAACCGCGGTGTGCGAGGACAAC
TCGGGTGCTCTAAAATTGCTCACAGCTTTCGCATTAGACCCAGCACCGAG
AACATTGATGTGAAGTTCCACCACGTAAAATCGCTGGTAGCCGATGGAAT
TGTAGACGTAAAGTACATCTCGACGTCGCATCAGAAAGCCGACATTATCA
CCAAAGGACTAAACCCGTCGGAGTTTATCCGCGCCCGTGGCATGCTGTTG
GGAGTAGTCACCCCCTCGTTTCGTAATTAGTATTAGACTTAGTTTGTGTC
TTGAGGGTTGGAGGTGTATGTGCTTGTATAAGTTGAAAGAAATTCGGGAG
GTTTGTGTCGAAGGAAAACGTCCACTGCTGATGCAACGCAGCTGGGAAAG
AAATGGGCATTGAGTAAAATAGAACTTCTTTCGGTAGCGTTGATTCAGAG
GACGCTGTGAGAGAGAATTGGGTCTCATATATCGAAACTAGAATGACGTA
GTCCTTGAGAGGACACATTGGAGTGCTTGCAGTACAAGAACGACTCTACT
CTACTGCATGGGTTTGATGCGGTATTGTAAAGGCGTTGCCGAATCGGCAC
GTCAGGTGAAGACAGCGTGGGCGTCTGAGTGTGGATAGTTCTATATCGCC
CTGGGTGTGTTTGCCTACCTGACTTCTCATCACGTATTTGAATTTTTGAA
TTTCGCCCTAGTCCAATCAATCTTTAGACTACAGTTTTGGACGAACAGGA
GGCTTGACCGCGACTCCCTACTCTCCCTTTCCACTCTTCTGAGACCCAGG
TGTTTGAATGGGCTAGGTTTCTGGCAAGGATCGGAGGAGTTTCTCCACCA
ATTCCACAGGAGGTAAGATGTACTGACGGTCAAATGTGAAACCTCGGTAC
TCAAAGAGAAGGTGGCCATTGGCACTACTGCCTTCGTTGGGGACAGAAAT
CAATCAAGGACATAGGCAGGTTCGTTGACTAGACATCCTGGTCTTTGTAC
GATACGGGGGTGGTCTTGTTATCATACGATGTACCACATGCATTTTGCCT
GCATACCTGGGTATTGATGACCGAAATGTGGTCAACATTCCTCCCTCGTG
TGTAAAACCCTTTCGTGTGTCTCGTTCTTCGTGCACCTCCCTACATTCTA
CCAACAGGTAGGGCTCCCACCAACACCTGATCACGTTCGGCCTCTATTCC
CCTCGAGGTCCGAACCGTCATTCGCTCAGCCATGACAGTTCAGGGA

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1308:11553..17698+

>mRNA_E-fasciculatus_F_contig1308.2330.1 ID=mRNA_E-fasciculatus_F_contig1308.2330.1|Name=mRNA_E-fasciculatus_F_contig1308.2330.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2154bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1308:11553..17698+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAACACCCCGACCGAACGACAATGCTGCCTGAGGACGATCCCTATTC
CGAACAGATGGAACACCCCGACCGAACGACAATGCTGCCTGAGGACGATC
CCTATTCCGAACAGGTGGTGCTTTTCGGAGGACAAGGTATTTGGTATCCT
ATTCCTGTTCTCCCATCAGAACTGGCCCCACCACCAAGACCTCAAACCAC
TACCGACCCTCCAAGCACCACGGTAGTGTTGCCAACGCCGCAAGACCCAA
TACCGGCGAAAGAGGCGGCGTCTTGGTCTGCTGCGCATGATACTATCACG
GCGAGGGGAGGGGGTTCAGCAGGGGATATGGGGTTGTCATGGGGTGGACG
AGCAAGCGACCGGGCTCTCGAAACGTACAATGCTGCCTCAACTCGTGCGC
CGAGAGAGCGGGCCAGATCCGTCCTTCGTGCCGAGCTGAAGAACCGGATC
GGGATCGGCCAAAACAGGTGGTGCTTTTCGGAGGACAAGGTATTTGGTAT
CCTATTCCTGTTCTCCCATCAGAACTGGCCCCACCACCAAGACCTCAAAC
CACTACCGACCCTCCAAGCACCACGGTAGTGTTGCCAACGCCGCAAGACC
CAATACCGGCGAAAGAGGCGGCGTCTTGGTCTGCTGCGCATGATACTATC
ACGGCGAGGGGAGGGGGTTCAGCAGGGGATATGGGGTTGTCATGGGGTGG
ACGAGCAAGCGACCGGGCTCTCGAAACGTACAATGCTGCCTCAACTCGTG
CGCCGAGAGAGCGGGCCAGATCCGTCCTTCGTGCCGAGCTGAAGAACCGG
ATCGGGATCGGCCAAAACAGTGTGGTGTACATGTGCGCTCAGAGTTTGTT
CAAGCTGCACCCCGACTTCGACTTAGCCGTTAAGGGCGTGCTAGAAGCAT
CGAGTTCGAATCACCTGGTTTTTACAGCGGGTAGACGGCAACAATGGACA
TCGATTCTCCAAGCGAGGCTAACTTCGACGCTCGGAGATGGTCTTATGGC
GAGGTGTGGTGTACATGTGCGCTCAGAGTTTGTTCAAGCTGCACCCCGAC
TTCGACTTAGCCGTTAAGGGCGTGCTAGAAGCATCGAGTTCGAATCACCT
GGTTTTTACAGCGGGTAGACGGCAACAATGGACATCGATTCTCCAAGCGA
GGCTAACTTCGACGCTCGGAGATGGTCTTATGGCGAGGGTATTCTTTGTG
CCGCGAACAGTATCTGGTGCAGCGTTTTCCTCCCTGCTGGCATCGGCCGA
CGTCGTGCTCCATCCCTTCCCTTTTGGCGGTTCGAAGACATCGGCTGATG
CACTCGCTGTTGGGGTATTCTTTGTGCCGCGAACAGTATCTGGTGCAGCG
TTTTCCTCCCTGCTGGCATCGGCCGACGTCGTGCTCCATCCCTTCCCTTT
TGGCGGTTCGAAGACATCGGCTGATGCACTCGCTGTTGGGGTACCAACAG
TGTCGATGGCTGGAAAGTACGTGGCGGGACGCATGGCACAGAGTTTCTAC
AAGACCATGGGCATGCAACACGTGTGCTGCGTCGCCACGGACGTTGCTAG
GTACCAACAGTGTCGATGGCTGGAAAGTACGTGGCGGGACGCATGGCACA
GAGTTTCTACAAGACCATGGGCATGCAACACGTGTGCTGCGTCGCCACGG
ACGTTGCTAGCTACGTGCAACTTGCTACGAGGCTTGGCCAGGACTTCGGG
TTTCGCAAGCGTATCATCGATATAATTGACAGGAGGCAGTGGGTCCTCTG
GGAGAGGAGGGACGAGCTACGTGCAACTTGCTACGAGGCTTGGCCAGGAC
TTCGGGTTTCGCAAGCGTATCATCGATATAATTGACAGGAGGCAGTGGGT
CCTCTGGGAGAGGAGGGACGAGGTGTTTGAATGGGCTAGGTTTCTGGCAA
GGATCGGAGGAGTTTCTCCACCAATTCCACAGGAGGTGTTTGAATGGGCT
AGGTTTCTGGCAAGGATCGGAGGAGTTTCTCCACCAATTCCACAGGAGGT
AGGGCTCCCACCAACACCTGATCACGTTCGGCCTCTATTCCCCTCGAGGT
CCGAACCGTCATTCGCTCAGCCATGAGTAGGGCTCCCACCAACACCTGAT
CACGTTCGGCCTCTATTCCCCTCGAGGTCCGAACCGTCATTCGCTCAGCC
ATGA