mRNA_E-fasciculatus_F_contig13054.2316.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13054.2316.1
Unique NamemRNA_E-fasciculatus_F_contig13054.2316.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13054.2316.1 vs. uniprot
Match: D8LR61_ECTSI (PA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR61_ECTSI)

HSP 1 Score: 508 bits (1309), Expect = 7.990e-178
Identity = 240/252 (95.24%), Postives = 246/252 (97.62%), Query Frame = 1
Query:    1 QRIVHGGVEPGTAVRTWTLCSDDDVKDVTPMVPTDSPFILMVDRGDCTFASKVRKAQHMGAIGVIIADNTCLCKDEASGVCNKSDETPCEQVEPIMADDGSGGDITIPSFLMKKMDATLIKNRLEGGQSVQAEMTWSLPAPDDRVEWSLWTSAMDTSAAPFKRDFKEVVKTLGKNAQFTPYYVVYNGDSYGCTGGGANNCGSLCTNDGRYCMTDPDFDTKAGVSGADVVRESLRQKCVWNIYGGEDAPFEDQ 756
            +RIVHGGV+PG +VRTWTLCSDDDVKDV PMVPTDSPFILMVDRGDCTFASKVRKAQHMGAIGVIIADNTCLCKDEASG+CNKS +TPCEQVEPIMADDGSGGDITIPSFLMKKMDATLIKNRLEGGQSVQAEMTWSLPAPDDRVEWSLWTSAMDTSAAPFKRDFKEVVKTLGK+AQFTPYYVVYNGDSYGCTGGGANNCGSLCTNDGRYCMTDPDFDTKAGVSGADVVRESLRQKCVWN YGGEDAP  DQ
Sbjct:   65 ERIVHGGVDPGQSVRTWTLCSDDDVKDV-PMVPTDSPFILMVDRGDCTFASKVRKAQHMGAIGVIIADNTCLCKDEASGICNKSGDTPCEQVEPIMADDGSGGDITIPSFLMKKMDATLIKNRLEGGQSVQAEMTWSLPAPDDRVEWSLWTSAMDTSAAPFKRDFKEVVKTLGKSAQFTPYYVVYNGDSYGCTGGGANNCGSLCTNDGRYCMTDPDFDTKAGVSGADVVRESLRQKCVWNTYGGEDAPLADQ 315          
BLAST of mRNA_E-fasciculatus_F_contig13054.2316.1 vs. uniprot
Match: A0A835YNB1_9STRA (PA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNB1_9STRA)

HSP 1 Score: 299 bits (765), Expect = 1.100e-95
Identity = 148/255 (58.04%), Postives = 184/255 (72.16%), Query Frame = 1
Query:    1 QRIVHGGVEPGTAVRTWTLCSDDDV-KDVTPMVPTDSPFILMVDRG--DCTFASKVRKAQHMGAIGVIIADNTCLCKDEASGVCNKSDETPCEQVEPIMADDGSGGDITIPSFLMKKMDATLIKNRLEGGQSVQAEMTWSLPAPDDRVEWSLWTSAMDTSAAPFKRDFKEVVKTLGKNAQFTPYYVVYNGDSYGCTGGGANNCGSLCTNDGRYCMTDPDFDTKAGVSGADVVRESLRQKCVWNIYGGEDAPFEDQ 756
            QR+V+    PG     +TLCSD +  K V P      PFIL+VDRG  DCTF SKVR+AQH+GA GVII D+ C+C D   G C  +    C+ VEPIMADDGSG DITIPSFLM KMD  +IK+ L+  Q +QAEMTWSLPAPDDRVEWSLWTSA D++A  FK +F++VV  LG +A FTP+Y+VY+G+ YGC     N+CG+LCTN GRYC  DPDFD  +G+SGAD+++E+LRQKC+W  YGG+ A   +Q
Sbjct:   59 QRLVY----PGNYTDPYTLCSDSEADKFVNPA----QPFILLVDRGGQDCTFVSKVRRAQHLGAAGVIIVDDRCICGD---GACASA--VACQPVEPIMADDGSGADITIPSFLMTKMDGNIIKSHLQANQFIQAEMTWSLPAPDDRVEWSLWTSAQDSAATAFKAEFRDVVTALGTHAYFTPHYIVYDGEEYGCRDD-TNHCGNLCTNAGRYCNPDPDFDRDSGLSGADIIQETLRQKCIWLHYGGDKASKGEQ 299          
BLAST of mRNA_E-fasciculatus_F_contig13054.2316.1 vs. uniprot
Match: A0A836CIN2_9STRA (PA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIN2_9STRA)

HSP 1 Score: 288 bits (738), Expect = 4.920e-91
Identity = 146/254 (57.48%), Postives = 179/254 (70.47%), Query Frame = 1
Query:    1 QRIVHGGVEPGTAVRTWTLCSDDDVKDVTPMVPTDSPFILMVDRG--DCTFASKVRKAQHMGAIGVIIADNTCLCKDEASGVCNKSDETPCEQVEPIMADDGSGGDITIPSFLMKKMDATLIKNRLEGGQSVQAEMTWSLPAPDDRVEWSLWTSAMDTSAAPFKRDFKEVVKTLGKNAQFTPYYVVYNGDSYGCTGGGANNCGSLCTNDGRYCMTDPDFDTKAGVSGADVVRESLRQKCVWNIYGGEDAPFEDQ 756
            QR+V+    PG   + + LCSD D    T   P + PFIL+VDRG  DCTF SKVR+AQH+GA G IIAD+ C C  +A   C+ S    CEQ+EPIMADDGSG DITIPSFLM K D  LIK  L+  + +Q EMTWSLPAPDDRVEWSLWT+A+D +AA FK +  +V   LG +A FTP+Y +Y+G+ YGC     ++CG+LCTN GRYC  DPDFD  +G+SGADV+RE+LRQKC+W  YGG  AP  DQ
Sbjct:   41 QRLVY----PGDFDQPYQLCSDVDAAKFTNPNP-NQPFILLVDRGGADCTFVSKVRRAQHLGAAGAIIADDRCKCAGDAQ--CDSS--VACEQLEPIMADDGSGADITIPSFLMTKTDGDLIKEHLKLKEFLQVEMTWSLPAPDDRVEWSLWTTAIDAAAAAFKGEMADVAAALGTHAFFTPHYTIYDGEEYGCRDD-THHCGNLCTNAGRYCNPDPDFDRDSGLSGADVIRETLRQKCIWLHYGGAQAPEADQ 284          
BLAST of mRNA_E-fasciculatus_F_contig13054.2316.1 vs. uniprot
Match: A0A4D9DEA6_9STRA (PA domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DEA6_9STRA)

HSP 1 Score: 282 bits (721), Expect = 4.670e-89
Identity = 142/252 (56.35%), Postives = 171/252 (67.86%), Query Frame = 1
Query:   10 VHGG--VEPGTAVRTWTLCSDDDVKDVTPMVPTDSPFILMVDRGDCTFASKVRKAQHMGAIGVIIADNTCLCKDEASGVCNKSDETPCEQVEPIMADDGSGGDITIPSFLMKKMDATLIKNRLEGGQSVQAEMTWSLPAPDDRVEWSLWTSAMDTSAAPFKRDFKEVVKTLGKNAQFTPYYVVYNGDSYGCTGGGANNCGSLCTNDGRYCMTDPDFDTKAGVSGADVVRESLRQKCVWNIYGGEDAPFEDQV 759
            V+GG   E      T  +CS     +V       SP+ILMVDRGDCTF +KVR AQH GA GV++ADN C+CKD A   C+   +T C+ +EPIMADDGSG DITIPSFL+ K DA  IK +L     VQ EMTWSLP PDDRVEWSLWTSA D+S+A  K +FKE +  LG++  FTPYY VY+G +Y C     ++CGSLCTN GRYCM DPD D   G SG D+V E+LRQKC+WN YGGE+   E+ V
Sbjct:   42 VYGGFIAEKLYYANTTKMCSAPTADEVAQW---KSPYILMVDRGDCTFVTKVRHAQHAGASGVLVADNLCVCKDLA---CHPDPDTSCQGIEPIMADDGSGADITIPSFLLYKPDADAIKEKLRQESLVQVEMTWSLPTPDDRVEWSLWTSANDSSSAALKEEFKEAMAALGQHQYFTPYYQVYDGAAYNCVNF-PDHCGSLCTNHGRYCMPDPDKDPYHGYSGRDIVIENLRQKCIWNHYGGENTGKEEGV 286          
BLAST of mRNA_E-fasciculatus_F_contig13054.2316.1 vs. uniprot
Match: A0A6V1XHF6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1XHF6_HETAK)

HSP 1 Score: 274 bits (701), Expect = 3.030e-86
Identity = 130/217 (59.91%), Postives = 159/217 (73.27%), Query Frame = 1
Query:  103 DSPFILMVDRGDCTFASKVRKAQHMGAIGVIIADNTCLCKDEASGVCNKSDETPCEQVEPIMADDGSGGDITIPSFLMKKMDATLIKNRLEGGQSVQAEMTWSLPAPDDRVEWSLWTSAMDTSAAPFKRDFKEVVKTLGKNAQFTPYYVVYNGDSYGCTGGGANNCGSLCTNDGRYCMTDPDFDTKAGVSGADVVRESLRQKCVWNIYGGEDAPFED 753
            ++PFILM DRGDCTF SKVR+AQH GA GV+IADN CLC D A      + +  CE +EPIMADDGSG DITIP+FLMKK+DA L+K ++  GQ V AEM+W+LP PDDRVEW LWT+A+D  A  FK+DF+ V   LG  A FTP+YVVY+G+   CT   ++ CG+LCTN GRYC+ DPD D   G+SGADVV E+LRQ C+W  YGG+ A   D
Sbjct:   91 EAPFILMADRGDCTFVSKVRRAQHAGAAGVLIADNKCLCGDAAC-----TSQEACEPLEPIMADDGSGADITIPAFLMKKVDADLVKGQILQGQLVVAEMSWALPNPDDRVEWDLWTTAIDDGAQTFKQDFEVVTSKLGPRAYFTPHYVVYDGNELRCTTA-SDKCGNLCTNQGRYCLPDPDNDRHKGISGADVVEENLRQLCIWRAYGGDAANQAD 301          
BLAST of mRNA_E-fasciculatus_F_contig13054.2316.1 vs. uniprot
Match: A0A7S2UWY7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWY7_9STRA)

HSP 1 Score: 266 bits (681), Expect = 4.460e-84
Identity = 127/233 (54.51%), Postives = 166/233 (71.24%), Query Frame = 1
Query:   55 LCSDDDVKDVTPMVPT----DSPFILMVDRGDCTFASKVRKAQHMGAIGVIIADNTCLCKDEASGVCNKSDETPCEQVEPIMADDGSGGDITIPSFLMKKMDATLIKNRLEGGQSVQAEMTWSLPAPDDRVEWSLWTSAMDTSAAPFKRDFKEVVKTLGKNAQFTPYYVVYNGDSYGCTGGGANNCGSLCTNDGRYCMTDPDFDTKAGVSGADVVRESLRQKCVWNIYGGEDA 741
            +C+D DV     M+P+    ++PFILM+DRGDCTF SKVR+AQH GA  V+++D+ CLC     G      E PCE VEPIMADDGSG DI IP++L+KK+D+ LIK  +  G  V AEM+W+LP PDDRVEW+LWTS++D  A   K DF E+ K LG+ A F P+Y++++G S  CT    ++CG+LCTN+GRYC+ DPD D   G+SGAD+V ESLRQ C+W IYG +DA
Sbjct:    1 MCADSDVAVNKWMMPSPDAAETPFILMMDRGDCTFVSKVRRAQHAGAAAVLVSDHKCLC-----GEAKCVSEQPCESVEPIMADDGSGADIAIPAYLLKKVDSDLIKGIITQGTLVVAEMSWALPNPDDRVEWTLWTSSLDEGAELLKADFLEITKGLGRRAYFVPHYMIFDGVSLRCTDSD-DHCGNLCTNEGRYCLPDPDNDRSNGLSGADLVAESLRQLCIWKIYGSQDA 227          
BLAST of mRNA_E-fasciculatus_F_contig13054.2316.1 vs. uniprot
Match: B8CDN1_THAPS (PA domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CDN1_THAPS)

HSP 1 Score: 258 bits (659), Expect = 1.110e-79
Identity = 125/217 (57.60%), Postives = 151/217 (69.59%), Query Frame = 1
Query:   91 MVPTDSPFILMVDRGDCTFASKVRKAQHMGAIGVIIADNTCLCKDEASGVCNKSDETPCEQVEPIMADDGSGGDITIPSFLMKKMDATLIKNRLEGGQSVQAEMTWSLPAPDDRVEWSLWTSAMDTSAAPFKRDFKEVVKTLGKNAQFTPYYVVYNGDSYGCTG-GGANNCGSLCTNDGRYCMTDPDFDTKAGVSGADVVRESLRQKCVWNIYGGED 738
            M+P  SP+ILMVDRG C+F  KVR AQ +GA GVI+ADNTCLC   A   C+      CEQ EPIMADDGSG DI+IPSFLM K DA L+K  +     V+ EM WSLP+PDDRVE+ LWT+  DT +  F++DFKE    LGK A FTP   +Y+G   GC G  G N+C +LCTN+GRYC TDPD D   G+SGADVV+ESLR+ C+W  YG +D
Sbjct:  118 MLPWPSPYILMVDRGGCSFTQKVRNAQRVGAAGVIMADNTCLCS--AGDSCHSDPGKDCEQREPIMADDGSGSDISIPSFLMFKQDADLVKAEVMANHVVRIEMQWSLPSPDDRVEYELWTTPTDTISRDFQKDFKEAAVALGKRAYFTPQMYIYDGIKSGCQGVDGENDCYNLCTNNGRYCATDPDNDLDRGISGADVVKESLRRMCIWQHYGQDD 332          
BLAST of mRNA_E-fasciculatus_F_contig13054.2316.1 vs. uniprot
Match: B7G5X7_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G5X7_PHATC)

HSP 1 Score: 256 bits (653), Expect = 9.390e-79
Identity = 129/234 (55.13%), Postives = 156/234 (66.67%), Query Frame = 1
Query:   55 LCSDDDV--------KDVTPMVPTDSPFILMVDRGDCTFASKVRKAQHMGAIGVIIADNTCLCKDEASGVCNKSDETPCEQVEPIMADDGSGGDITIPSFLMKKMDATLIKNRLEGGQSVQAEMTWSLPAPDDRVEWSLWTSAMDTSAAPFKRDFKEVVKTLGKNAQFTPYYVVYNGDSYGCTG-GGANNCGSLCTNDGRYCMTDPDFDTKAGVSGADVVRESLRQKCVWNIYG 729
            LC  DD+        K+ T M P  SPF+LM+DRG CTF  KVR AQHMGA GV+IADNTC+C D      N +   PCE  EPIMADDGSG DI+IPSFL+ K DA  I   ++  + VQAEM WSLP+PDDRVE+ LWTS  D  +A F RD+K+V   LG  A FTP+  +++G+  GC    G N C +LCTN GRYC TDPD D   G+SG DVVRESLR+ C+W+ YG
Sbjct:   78 LCEIDDMSGGFPAREKEGTRMKPYPSPFLLMMDRGHCTFVQKVRNAQHMGASGVLIADNTCICSDTTCTAANPT--APCEMTEPIMADDGSGADISIPSFLLYKTDADKIIAEVKENRPVQAEMAWSLPSPDDRVEYDLWTSPSDGISAEFIRDWKDVAIALGDKAYFTPHMYLHDGEKSGCHAPNGDNYCFTLCTNAGRYCATDPDDDLTKGISGGDVVRESLRRICIWSHYG 309          
BLAST of mRNA_E-fasciculatus_F_contig13054.2316.1 vs. uniprot
Match: K0R5E7_THAOC (PA domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R5E7_THAOC)

HSP 1 Score: 253 bits (647), Expect = 5.350e-78
Identity = 124/217 (57.14%), Postives = 149/217 (68.66%), Query Frame = 1
Query:   91 MVPTDSPFILMVDRGDCTFASKVRKAQHMGAIGVIIADNTCLCKDEASGVCNKSDETPCEQVEPIMADDGSGGDITIPSFLMKKMDATLIKNRLEGGQSVQAEMTWSLPAPDDRVEWSLWTSAMDTSAAPFKRDFKEVVKTLGKNAQFTPYYVVYNGDSYGCTG-GGANNCGSLCTNDGRYCMTDPDFDTKAGVSGADVVRESLRQKCVWNIYGGED 738
            M+P  SP+ILMVDRG CTF  KVR AQ +GA GVIIADNTCLC   A   C+      CE+ EPIMADDGSG DI+IPSFLM K DA  +K  L+    V+ EMTWSLP+PDDRVE+ LWT+  D  +  F++DFK     LG  A FTP   +Y+G   GC G  G N+C +LC+N+GRYC TDPD D   G+SGADVV ESLR+ CVW +YG +D
Sbjct:  109 MMPWQSPYILMVDRGGCTFVQKVRNAQRVGAAGVIIADNTCLCS--AGDQCHSDPGRDCEEREPIMADDGSGSDISIPSFLMFKEDADEVKAELQANHHVRIEMTWSLPSPDDRVEYELWTTPTDVISRDFQKDFKMAAVALGDRAYFTPQQYIYDGIRSGCQGIDGENDCFNLCSNNGRYCATDPDNDLDRGISGADVVGESLRRMCVWKLYGKKD 323          
BLAST of mRNA_E-fasciculatus_F_contig13054.2316.1 vs. uniprot
Match: A0A7S2U9C5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U9C5_9STRA)

HSP 1 Score: 253 bits (647), Expect = 6.050e-78
Identity = 125/217 (57.60%), Postives = 147/217 (67.74%), Query Frame = 1
Query:   91 MVPTDSPFILMVDRGDCTFASKVRKAQHMGAIGVIIADNTCLCKDEASGVCNKSDETPCEQVEPIMADDGSGGDITIPSFLMKKMDATLIKNRLEGGQSVQAEMTWSLPAPDDRVEWSLWTSAMDTSAAPFKRDFKEVVKTLGKNAQFTPYYVVYNGDSYGCTG-GGANNCGSLCTNDGRYCMTDPDFDTKAGVSGADVVRESLRQKCVWNIYGGED 738
            M P  SP+ILMVDRG CTF +KVR AQ  GA GVIIADNTCLC       C       CE  EPIMADDGSG DI+IPSFLM K DA  IK  L     V+ EM WSLP+PDDRVE+ LWT+  DT +  F++ FK   ++LGK+A FTP+  +Y+G   GC G  G N C +LCTN+GRYC TDPD D   G+SGADVVRESLR+ C+W  YG +D
Sbjct:  109 MAPWPSPYILMVDRGGCTFVNKVRNAQRSGAAGVIIADNTCLCSYGKE--CTSDRGVECETREPIMADDGSGADISIPSFLMFKQDADPIKAELMANHPVRMEMAWSLPSPDDRVEYDLWTTPSDTVSREFQKTFKPAAESLGKHAYFTPHMYIYDGIKSGCQGLNGENQCYNLCTNNGRYCATDPDNDLDKGISGADVVRESLRRTCIWKQYGEDD 323          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13054.2316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR61_ECTSI7.990e-17895.24PA domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A835YNB1_9STRA1.100e-9558.04PA domain-containing protein n=1 Tax=Tribonema min... [more]
A0A836CIN2_9STRA4.920e-9157.48PA domain-containing protein n=1 Tax=Tribonema min... [more]
A0A4D9DEA6_9STRA4.670e-8956.35PA domain-containing protein n=1 Tax=Nannochlorops... [more]
A0A6V1XHF6_HETAK3.030e-8659.91Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2UWY7_9STRA4.460e-8454.51Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
B8CDN1_THAPS1.110e-7957.60PA domain-containing protein n=1 Tax=Thalassiosira... [more]
B7G5X7_PHATC9.390e-7955.13Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
K0R5E7_THAOC5.350e-7857.14PA domain-containing protein n=1 Tax=Thalassiosira... [more]
A0A7S2U9C5_9STRA6.050e-7857.60Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13054contigE-fasciculatus_F_contig13054:21..3705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score506.5
Seed ortholog evalue7.1e-141
Seed eggNOG ortholog2880.D8LR61
Preferred nameVSR1
KEGG rclassRC00718
KEGG koko:K01859,ko:K17637
KEGG ReactionR02446,R06556,R07990,R07995
KEGG Pathwayko00941,ko01100,ko01110,ko04014,map00941,map01100,map01110,map04014
KEGG ModuleM00137
GOsGO:0000139,GO:0003674,GO:0005048,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005773,GO:0005783,GO:0005794,GO:0005802,GO:0005886,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006892,GO:0006896,GO:0007034,GO:0008104,GO:0008150,GO:0009940,GO:0010008,GO:0010209,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030135,GO:0030136,GO:0030659,GO:0030662,GO:0030665,GO:0031090,GO:0031410,GO:0031902,GO:0031982,GO:0031984,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0042277,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0071944,GO:0072594,GO:0072665,GO:0072666,GO:0097708,GO:0098588,GO:0098791,GO:0098805
EggNOG free text desc.amino-terminal vacuolar sorting propeptide binding
EggNOG OGs28KFV@1,2QSX2@2759
EC5.5.1.6
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Hectar predicted targeting categoryother localisation
Exons5
Model size759
Cds size759
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13054.2316.1prot_E-fasciculatus_F_contig13054.2316.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13054 21..3705 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927810.7478933-CDS-E-fasciculatus_F_contig13054:20..1971622927810.7478933-CDS-E-fasciculatus_F_contig13054:20..197Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13054 21..197 -
1695995704.350517-CDS-E-fasciculatus_F_contig13054:20..1971695995704.350517-CDS-E-fasciculatus_F_contig13054:20..197Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13054 21..197 -
1622927810.7726235-CDS-E-fasciculatus_F_contig13054:1473..15781622927810.7726235-CDS-E-fasciculatus_F_contig13054:1473..1578Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13054 1474..1578 -
1695995704.3677595-CDS-E-fasciculatus_F_contig13054:1473..15781695995704.3677595-CDS-E-fasciculatus_F_contig13054:1473..1578Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13054 1474..1578 -
1622927810.7884703-CDS-E-fasciculatus_F_contig13054:1931..20821622927810.7884703-CDS-E-fasciculatus_F_contig13054:1931..2082Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13054 1932..2082 -
1695995704.3788815-CDS-E-fasciculatus_F_contig13054:1931..20821695995704.3788815-CDS-E-fasciculatus_F_contig13054:1931..2082Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13054 1932..2082 -
1622927810.8031578-CDS-E-fasciculatus_F_contig13054:2576..27461622927810.8031578-CDS-E-fasciculatus_F_contig13054:2576..2746Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13054 2577..2746 -
1695995704.390554-CDS-E-fasciculatus_F_contig13054:2576..27461695995704.390554-CDS-E-fasciculatus_F_contig13054:2576..2746Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13054 2577..2746 -
1622927810.814652-CDS-E-fasciculatus_F_contig13054:3549..37051622927810.814652-CDS-E-fasciculatus_F_contig13054:3549..3705Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13054 3550..3705 -
1695995704.4017973-CDS-E-fasciculatus_F_contig13054:3549..37051695995704.4017973-CDS-E-fasciculatus_F_contig13054:3549..3705Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13054 3550..3705 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13054.2316.1

>prot_E-fasciculatus_F_contig13054.2316.1 ID=prot_E-fasciculatus_F_contig13054.2316.1|Name=mRNA_E-fasciculatus_F_contig13054.2316.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=253bp
QRIVHGGVEPGTAVRTWTLCSDDDVKDVTPMVPTDSPFILMVDRGDCTFA
SKVRKAQHMGAIGVIIADNTCLCKDEASGVCNKSDETPCEQVEPIMADDG
SGGDITIPSFLMKKMDATLIKNRLEGGQSVQAEMTWSLPAPDDRVEWSLW
TSAMDTSAAPFKRDFKEVVKTLGKNAQFTPYYVVYNGDSYGCTGGGANNC
GSLCTNDGRYCMTDPDFDTKAGVSGADVVRESLRQKCVWNIYGGEDAPFE
DQV
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mRNA from alignment at E-fasciculatus_F_contig13054:21..3705-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13054.2316.1 ID=mRNA_E-fasciculatus_F_contig13054.2316.1|Name=mRNA_E-fasciculatus_F_contig13054.2316.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3685bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13054:21..3705- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGAGGATCGTGCACGGTGGCGTGGAGCCGGGCACGGCGGTAAGGACGTG GACTCTGTGCAGCGACGATGACGTGAAGGACGTCACCCCCATGGTGCCGA CGGACTCGCCTTTCATCCTCATGGTGGACCGAGGGGACTGCACCTTCGCC AGCAAGGTCGGTGTTTTGTGACTCTGTGTATGTGTGATTTTTTTGTTATT GTAGCATCGACCACGCCAACCGGCTGACAATGAAAAGTCGTCAGTCTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTAAGATCGACCGCGCTAAC TGGCTGACCAATGAACAGACGTGATATGTGTGTGTTGTGTATATTTTGCA TTGTATCAGCGCGCTCTTGTTGTTGTTGGAAAAGTTGTCCCAATCCTTTG CTGCCGTCACCTGTAGGGCCTCCGCTTGCCGTACTGTGCACGAGTAGGGC CTCTTCCGGTTTGTCTATGCTGCGCTACTACAACATTGAACAACCTGTAC ATTTCCGTGCCTTTTGGAGAACTTATTTTTTTGTTTGACCTTGCCACGTT TTCATGGGCTCGGTTCGTGTGTGTTGTTTTGGTTCGTCGATTCATACTTT GAGCTCTGACTACGCCACTGCTTCTTCGGGGTACTCTCGAGTGTAGAGTT TGGCAATGTTCTCCGGTCCGTGGGTAGCGTTGTTGTTGTTGTTGTTGTTG TTGTTGTTTTGTCCTACTTCGGAGTCCAGGGTGGCACATGTGTGTGTGTT TCGTTGCTCTGCTCTCTTCTTGCTGTCGTGTTCATCGTCCCCCCTCCCTC CCTGCTGCTCGTTGTTGTCTTTTATGGCTCCCTCCCTCCCTCCGTGCCTA TCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGCCTGCC TGCCTGCCTGCCTGCCCGCCTGCTTGCTGCTGCTGCCGCCAAACGCCGTC GTTACACAGGTGCGGAAGGCACAGCACATGGGGGCGATCGGCGTCATCAT CGCGGACAACACGTGCCTGTGCAAGGACGAGGCCAGCGGCGTCTGCAACA AGTCCGACGAGACTCCCTGCGAGCAGGTGGAGCCCATCATGGCAGACGAT GGCTCAGGCGGTGACATCACCATTCCAAGGTGAGCCGGCCAGCCGGCCGG GGGGGGGGGGGGAGGTACGCGTTTGGAGGTTGAGTTAATTGTGCATGACC GCCAACAATGGAACGGGGAAGAAAGCAATAGCACGCCGGTAGTATGCGTA GGTTAGCTGGTGGGCGAGCGATGCGGATGTTGGCCGTGGGCATGCAGTAA GCACGAGCGGTAGTGCTGTGGTGCTCATGCTGAGAGAGTGGCTTTCCAAT GTTGGGCAGCGGCGTTTCTTCACGAGGCCAACACCGAAGCACGCTCAACA GCCCTCGAGTGATGGATTCGTTTGTTCCAAGGAGGAAAGGGCCATAGCGG CGGGACTACTGCTCGACGTGCATGCTGCCTCAGATACCCACGTCATGTCA TGAATTGCGAGAGAGCTATTGACAAAATTCCCATGTGGCACTCAATATTG TGGCCAACCTCACCTGCCTTCGCTGGCTGTATATTGTTTGCAACCTCGCT CGGCCCGATCGTTGCGAGTGAAGCTTCCTGATGAAGAAGATGGACGCGAC TCTTATCAAGAACCGACTGGAGGGTGGTCAGAGTGTCCAGGCCGAGATGA CCTGGTCCCTCCCTGCCCCCGACGACCGGGTGGAGTGGTCGCTGTGGACC TCCGCCATGGACACGTCTGCAGCGGTGCGTTTGGTGTTTTGTGAATTTGC ATTGTAGTTGTTGTTGTTGCGGCTGTGTGGCGGTTGTTTTGCGGTCGTGA TGGACGTGCTCCTCGTTCCTCCAGTCCTTGAAAAAGGAACACTGAAACTC CAAATGGAGATGAGGGAGCACCGAAGTCTATTGAGCAACAGGCACGTCCT GTGAAACGTCCTTCATGCGCGTGTGCGGGTGATGATTGATTGATTGTTCC GTTGCAAACGCTCTGTCTTGTTCTTCTCGGCACCCTTTTCACTCCGCCAG AGTGCCGTTGTTTTTTCTTCTTTCCCACTGGACTACTGCTGTTGCTGACC TCATCCTTTGCGTACGCACCGATGCAGCCGTTCAAGCGGGACTTCAAGGA GGTGGTCAAGACGCTCGGGAAGAACGCACAGTTCACGCCGTACTACGTGG TCTACAACGGGGACTCCTACGGCTGCACGGGGGTGAGTGCACACACATGC ACAGAGCAAGCCTTTCGAGCCCGATGTCCTTCTCCCAACAACCGCCGTAG CGCTAGAGAGGGTCCGCCAAAAGATACTTGTAATATTGCACTGGCGATAA GAGTATAAGAGTGGTCGTGAAAACAACGAGGGCGGTGGTGAAAGCACTCC GAAACGAACGCGCGTTCAAAGTAGCAACAGCCTTGGTAGGCACGCGCAGT TTTTTTCTGTTTCTTCTACGGCATCTGTCTTTATTTCGGAGAGTAGTTTA GCCTCCCCCATGCCGCCCCGAGGGCCCAGATCATGGTAGAGCCTTTTGAA GCATTCTCTGTTCCCGCACCGAGACTGGCGTCTTTTCATGGGCCAGCCGG TTACAGTCGATGCAATGCGAAAGACACACACACACACACACACACACCGG ACCAGCTGATGTCTTGTTGTTTGGTCAGCCCGTCAGCCCGGTGGCGATCT TTAGCGAAAGCAGCGAACGTCCTCTCGGAGTTTTGTGTCTCCGCCTTGTA CTCGCGAAGCAGGGCATTGCTGTCTTCCGACCCCTCGCTGTCGGTACAGC CATTCTCTAACTTGCGGGAGCCGTGGACATACATGCGCTTTGGCTACGGA TCCTCTGATTCTTTTTTTGGGGCCGGGGGGTCCCCTCTATTGTTCACGCC GCAAAGCCGGGGTCTAACAGCCCCGGCCCCGGGGGACTCCCAGCCCTCGA CCTCTAGGTCAAGGCAAGGCAAGGCAGCGACATCGCTGAGTCATATGGGG ACGCGCAGGTTACCAGCCAATAGCTCACAAGCACCAATCCAGAAAATGTT AAAACGCCCATGCCACCACCACTCCGGAGACAAATGTGTTTTAATGTTGG TTTTGCAAATTGCTCCATCTCACGTTCGGGAGAAGTGAAACGTCTGATAT TGAGCGAGGGTGGGACAGGGTATGGAGTATCTGTGTGTCTCTCTCTGTTA CTTTCCGCTGGTGTGGAAGGCGTGTCTGTTTGTCTGTCTGTGCCAGGGCT TCCCTGTGCTGAACCCCCGTGCCTCACAAGTCGATCGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAACCAGCCACACGGGATCGCGGTCAAGAC AGCGACACCCCACACCGTGATTCCAAACCCTACACCTCCGCTCAACCTCC AATCCAATCCAATCCAACTTGCCTCTTGGAAACAACAAAAAAACAACGAT GTGATGTGATGTGCATGTCTATCAACGACGACGACGACGACGACGACGAC GACGCCAGGGCGGAGCCAACAACTGCGGTAGCCTGTGCACCAACGACGGG CGGTACTGCATGACGGACCCGGACTTCGACACGAAGGCGGGGGTGTCGGG GGCGGACGTGGTGCGGGAGTCGCTGAGGCAGAAGTGCGTGTGGAACATCT ACGGCGGCGAAGACGCCCCCTTTGAAGATCAGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13054:21..3705-

>mRNA_E-fasciculatus_F_contig13054.2316.1 ID=mRNA_E-fasciculatus_F_contig13054.2316.1|Name=mRNA_E-fasciculatus_F_contig13054.2316.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1518bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13054:21..3705- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGAGGATCGTGCACGGTGGCGTGGAGCCGGGCACGGCGGTAAGGACGTG
GACTCTGTGCAGCGACGATGACGTGAAGGACGTCACCCCCATGGTGCCGA
CGGACTCGCCTTTCATCCTCATGGTGGACCGAGGGGACTGCACCTTCGCC
AGCAAGCAGAGGATCGTGCACGGTGGCGTGGAGCCGGGCACGGCGGTAAG
GACGTGGACTCTGTGCAGCGACGATGACGTGAAGGACGTCACCCCCATGG
TGCCGACGGACTCGCCTTTCATCCTCATGGTGGACCGAGGGGACTGCACC
TTCGCCAGCAAGGTGCGGAAGGCACAGCACATGGGGGCGATCGGCGTCAT
CATCGCGGACAACACGTGCCTGTGCAAGGACGAGGCCAGCGGCGTCTGCA
ACAAGTCCGACGAGACTCCCTGCGAGCAGGTGGAGCCCATCATGGCAGAC
GATGGCTCAGGCGGTGACATCACCATTCCAAGGTGCGGAAGGCACAGCAC
ATGGGGGCGATCGGCGTCATCATCGCGGACAACACGTGCCTGTGCAAGGA
CGAGGCCAGCGGCGTCTGCAACAAGTCCGACGAGACTCCCTGCGAGCAGG
TGGAGCCCATCATGGCAGACGATGGCTCAGGCGGTGACATCACCATTCCA
AGCTTCCTGATGAAGAAGATGGACGCGACTCTTATCAAGAACCGACTGGA
GGGTGGTCAGAGTGTCCAGGCCGAGATGACCTGGTCCCTCCCTGCCCCCG
ACGACCGGGTGGAGTGGTCGCTGTGGACCTCCGCCATGGACACGTCTGCA
GCGCTTCCTGATGAAGAAGATGGACGCGACTCTTATCAAGAACCGACTGG
AGGGTGGTCAGAGTGTCCAGGCCGAGATGACCTGGTCCCTCCCTGCCCCC
GACGACCGGGTGGAGTGGTCGCTGTGGACCTCCGCCATGGACACGTCTGC
AGCGCCGTTCAAGCGGGACTTCAAGGAGGTGGTCAAGACGCTCGGGAAGA
ACGCACAGTTCACGCCGTACTACGTGGTCTACAACGGGGACTCCTACGGC
TGCACGGGGCCGTTCAAGCGGGACTTCAAGGAGGTGGTCAAGACGCTCGG
GAAGAACGCACAGTTCACGCCGTACTACGTGGTCTACAACGGGGACTCCT
ACGGCTGCACGGGGGGCGGAGCCAACAACTGCGGTAGCCTGTGCACCAAC
GACGGGCGGTACTGCATGACGGACCCGGACTTCGACACGAAGGCGGGGGT
GTCGGGGGCGGACGTGGTGCGGGAGTCGCTGAGGCAGAAGTGCGTGTGGA
ACATCTACGGCGGCGAAGACGCCCCCTTTGAAGATCAGGTGGGCGGAGCC
AACAACTGCGGTAGCCTGTGCACCAACGACGGGCGGTACTGCATGACGGA
CCCGGACTTCGACACGAAGGCGGGGGTGTCGGGGGCGGACGTGGTGCGGG
AGTCGCTGAGGCAGAAGTGCGTGTGGAACATCTACGGCGGCGAAGACGCC
CCCTTTGAAGATCAGGTG
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