mRNA_E-fasciculatus_F_contig1297.2250.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1297.2250.1
Unique NamemRNA_E-fasciculatus_F_contig1297.2250.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1297.2250.1 vs. uniprot
Match: D8LRU6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRU6_ECTSI)

HSP 1 Score: 1031 bits (2667), Expect = 0.000e+0
Identity = 572/639 (89.51%), Postives = 594/639 (92.96%), Query Frame = 3 
Query:  444 MAPPLPKGRSVPVKKTVLEEEEYVDRLGEIIEGDYFPNNAKMYRALAGLADHGQDNTPSRTPAGGSTVGTPVTGLRIHGEASRGDGLELRVNGGDSERPSSSKDAGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADRPKIGDSRPNQVETWKHRTRNQLMFSPNLAASNDVCRIEQAPTEAAQLLLVKDRSPSSTATTKRRLIKQSEEVVKRVTRAAATSTQEYADGDCDSSESSRAAXVXXXXXXXXXXXX-PSSDEALTATPDQPHQGEREKQSTGPPKAGGSTQGTEMTEPLHCAPCLDSNKGVDGFGSSGSRTDEPPAPRRPAPPVSRGSVVIKANPKVIQAHATRFPAPAPRKPSRGPWASPIEKPSSSRESVAELLAGTADASGYEEVPMTPSRVPGVDGDSPQVTWGSIDGTPMILDPRATPLPEAGGGAMDVANFMETLGGVVGGVGQQQFEIKDLPARDKLAHRLEAVDTRRKRAKFGTSAAADGRGTHTPAPATPMTPQTPGTGRRXXXXXXXXXRGGRTPAKGKGKA----AAVTPAARSLAARLAQRQSAGTPFGGGLTPGRQRKRTNRSGGAAGANRG 2345
            MAPPLPKGRSVP+KKTVLEEEEYVDRLGEIIEGDYFPNNAKMYRALAGLADHGQD TPSRTPAGGS VGTPVTGLR  G ++ GDGLELRV+GG+S+ PSSS  AGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADRPKIGDSRPNQV+TWKHRTRNQLMFSPNLAASND+CRIEQAPTEAAQLL VKD S S+TATTKRR+IKQSEEVVKRV RA ATST+E ADGDC SS+SS A X XXXXXXXXXXXX PSSDEALTATPDQPHQGE E QS+GPP AGGSTQ TEM EPLHC P +DSN+GVD FGSS SR DEPPAP RPAPPVSRG+VV+KANPKVIQAHATRFP PAPRKPSRGPWASPIEKPSSSRESVAELLAGTAD+SGYEEVPMTPSRVPGVDGDSPQ+TWGSIDGTPMILDPRATPLPEAG GAMDVA+FMETLGGVVGGVGQQQFEIKDLPARDKLAHRLEAVDTRRKRAK G  AAADGRGTHTPAPATPMTPQTPGTGRRXXXXXXXXXRGGRTPAKGKG      AAVTPAARSLAARLAQRQS  TPFGGGLTPGRQR+RT+RSGG AGANRG
Sbjct:    1 MAPPLPKGRSVPLKKTVLEEEEYVDRLGEIIEGDYFPNNAKMYRALAGLADHGQDTTPSRTPAGGSMVGTPVTGLRSIGGSTDGDGLELRVSGGNSDGPSSSNCAGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADRPKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQAPTEAAQLL-VKDGSTSATATTKRRVIKQSEEVVKRVARATATSTKESADGDCHSSKSSGATXXXXXXXXXXXXXXXPSSDEALTATPDQPHQGEPEYQSSGPPNAGGSTQRTEMDEPLHCPPRVDSNEGVDDFGSSESRADEPPAPPRPAPPVSRGAVVVKANPKVIQAHATRFPVPAPRKPSRGPWASPIEKPSSSRESVAELLAGTADSSGYEEVPMTPSRVPGVDGDSPQITWGSIDGTPMILDPRATPLPEAGRGAMDVASFMETLGGVVGGVGQQQFEIKDLPARDKLAHRLEAVDTRRKRAKLGAGAAADGRGTHTPAPATPMTPQTPGTGRRXXXXXXXXXRGGRTPAKGKGXXXXXXAAVTPAARSLAARLAQRQSVDTPFGGGLTPGRQRRRTDRSGGGAGANRG 638
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BLAST of mRNA_E-fasciculatus_F_contig1297.2250.1 vs. uniprot
Match: A0A2P4YVG3_9STRA (Uncharacterized protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YVG3_9STRA)

HSP 1 Score: 136 bits (342), Expect = 7.250e-31
Identity = 95/238 (39.92%), Postives = 129/238 (54.20%), Query Frame = 3 
Query:  483 KKTVLEEEEYVDRLGEIIEGDYFPNNAKMYRALAGLADHGQD----------------NTPSRTPAGGSTVGTPVTGLRIHGEASRGDGLELRVNGGDSERPSSSKDAGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADR-PKIGDSRPNQVETWKHRTRNQLMFSPNLAASNDVCRIEQAPTEAAQLLL 1145
            +K VLEEEEYV+ LG+IIE D+FP+ +K+ +    L D  ++                NT  R+ A  S    P   L    E S G  L+   +  D  R S +        L +FV THTSEDNEAF ELQEK  +   RRY WA+D   D +G+     KL +L NG  +S E+R+  D ACA + PK  D RP+  +TWK+R RN L+F P+L  + ++C++E  P   AQLLL
Sbjct:    3 RKVVLEEEEYVEALGQIIERDFFPDLSKLKKQSELLRDEEENLPWTDTTLRVASMTRGNTSERSNASDSGWDEPTPTL----EQSTGSPLQDEDHAEDKSRASMT--------LNRFVTTHTSEDNEAFNELQEKTVKDHERRYHWAFD---DKKGD----PKLHLLTNGTWISKEQRQIADKACAPKGPK--DDRPSAPQTWKYRARNPLLFPPDLETTREICQVESGP--RAQLLL 217
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BLAST of mRNA_E-fasciculatus_F_contig1297.2250.1 vs. uniprot
Match: A0A225X327_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X327_9STRA)

HSP 1 Score: 134 bits (336), Expect = 4.660e-30
Identity = 95/228 (41.67%), Postives = 127/228 (55.70%), Query Frame = 3 
Query:  483 KKTVLEEEEYVDRLGEIIEGDYFPNNAKMYRALAGLADHGQDNTPSRTPAGGSTVGTPVTGLRIHGEASRGDGLEL------RVNGGDSERPSSSKDAGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADR-PKIGDSRPNQVETWKHRTRNQLMFSPNLAASNDVCRIEQAPTEAAQLLL 1145
            KK VLEEEEYVD L +IIE D+FP+  K+ R    L D       + T    +T G     + +  +AS G G +       ++ G     P+  K   +   L +FVATHTSEDNE+F ELQEK  +   RRY WA+D   D +G+     KL +L NG  +S E+R   D ACA + PK  D RP+  ETWK+R RN L+F P L A+ D+C++E  P   +QLLL
Sbjct:    3 KKVVLEEEEYVDALDQIIERDFFPDLPKLKRQAELLRDEEDLPWTNTTLRAATTQGN----MSVRSDAS-GSGWDQPTPMAEQLTGSPVVEPAEDKSQASM-TLNRFVATHTSEDNESFNELQEKAVKDHERRYHWAFD---DKKGD----PKLHLLTNGTWISKEQRLLADKACAPKGPK--DDRPSAPETWKYRARNPLLFPPELEATRDICQVE--PGSKSQLLL 213
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BLAST of mRNA_E-fasciculatus_F_contig1297.2250.1 vs. uniprot
Match: A0A0P1A564_PLAHL (Nuclear protein ES2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A564_PLAHL)

HSP 1 Score: 131 bits (329), Expect = 4.490e-29
Identity = 99/246 (40.24%), Postives = 133/246 (54.07%), Query Frame = 3 
Query:  483 KKTVLEEEEYVDRLGEIIEGDYFPNNAKMY--RALAGLADHG-----------QDNTPSRTPAGGSTVG----TPVTGLRIHGEASRGDGLELRVNGGDSERPSSSKDAGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADRPKIGDSRPNQVETWKHRTRNQLMFSPNLAASNDVCRIEQAPTEAAQLLLVKDRSPSS 1169
            KK VLEE+EYV+ LG IIE D+FP+  K+   R L  LAD G            D+T  R+ A  S VG    TP   L        GD +++     DS    +S        L +FVATHTSEDNE+F ELQEK     +R+Y WA+D     E  +   +KL +L NG  +S ++R+ +D ACA +  + D RP   ETW++R RN L+F P L A+ D+C+I+ A     QLLL KD +  S
Sbjct:    3 KKVVLEEDEYVETLGLIIERDFFPDLPKLQKQRRLL-LADEGTETALRAISTTSDDTSVRSNA--SVVGWDQPTPYAKLAA------GDRVQVED---DSNSVMASM------TLNRFVATHTSEDNESFKELQEKAVNDHQRKYHWAFD-----ENKDKGDSKLHLLANGTWISKDQRKLVDEACAPKG-LKDDRPGFPETWRYRARNPLIFQPELEATRDICQIKAA--SKGQLLLEKDPNSRS 222
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BLAST of mRNA_E-fasciculatus_F_contig1297.2250.1 vs. uniprot
Match: D0MY39_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MY39_PHYIT)

HSP 1 Score: 129 bits (324), Expect = 1.320e-28
Identity = 89/220 (40.45%), Postives = 124/220 (56.36%), Query Frame = 3 
Query:  483 KKTVLEEEEYVDRLGEIIEGDYFPNNAKMYRALAGLADHGQDNTP-SRTPAGGSTVGTPVTGLRIHGEASRGDG-------LELRVNGGDSERPSSSKDAGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADR-PKIGDSRPNQVETWKHRTRNQLMFSPNLAASNDVCRIEQ 1115
            KK VLEE+EYV+ LG+IIE D+FP+  K+ +    L D  ++  P + T    ++    V  +R +   S  D          L  +G DS + S +        L  FVATHTSEDNE+F ELQEK  +  +RRY WA+D   D +G+     KL +L NG  +S E+R+  DAACA + PK  D RP+  ETW +R RN L+F P L A+ D+C++ Q
Sbjct:    3 KKVVLEEDEYVEALGQIIERDFFPDLPKLKKQTELLRD--EEGLPWTDTTLRAASTSRGVVSVRSNANESGWDQPTPMVEQYALDEDGHDSTKASMT--------LNHFVATHTSEDNESFNELQEKAVKDHQRRYHWAFDDDKD-KGD----PKLHLLTNGTWISKEQRQIADAACAPKGPK--DDRPSAPETWTYRARNPLLFPPELDATRDICQVGQ 205
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BLAST of mRNA_E-fasciculatus_F_contig1297.2250.1 vs. uniprot
Match: A0A662XTQ1_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XTQ1_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.890e-28
Identity = 89/209 (42.58%), Postives = 118/209 (56.46%), Query Frame = 3 
Query:  486 KTVLEEEEYVDRLGEIIEGDYFPNNAKMYRALAGLADHGQDNTPSRTPAGGSTVGTPVTGLRIHGEASRGDGL-ELRVNGGDSERPSSSKDAGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADR-PKIGDSRPNQVETWKHRTRNQLMFSPNLAASNDVCR 1106
            K VLEEEEYV+ LGEIIE D+FP+   + R  A L+   Q + P+R P                  A+R + L   R    D E+ +   +      L++FVATHTSEDNEAF ELQEK  E  +RRY WA+D    G+G+     KL +L +G  +S ++R   D ACA + PK  D RP+  ETWK R RN L+F P+LA + D+CR
Sbjct:    5 KVVLEEEEYVEALGEIIERDFFPDLPSLKRQTAVLSSWDQPS-PAREPT-----------------ANRANALVRNRTRSEDDEKSAVESEGVQNMTLSRFVATHTSEDNEAFNELQEKAIEDHQRRYHWAFDDN-SGKGD----PKLHLLTDGTWISKQQRHLADEACAPKGPK--DDRPSAPETWKFRARNPLLFPPDLATTRDICR 188
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BLAST of mRNA_E-fasciculatus_F_contig1297.2250.1 vs. uniprot
Match: A0A662XZJ0_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZJ0_9STRA)

HSP 1 Score: 134 bits (338), Expect = 2.830e-28
Identity = 87/209 (41.63%), Postives = 115/209 (55.02%), Query Frame = 3 
Query:  486 KTVLEEEEYVDRLGEIIEGDYFPNNAKMYRALAGLADHGQDNTPSRTPAGGSTVGTPVTGLRIHGEASRGDGLELRVNGGDSERPSSSKDAGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADR-PKIGDSRPNQVETWKHRTRNQLMFSPNLAASNDVCRI 1109
            K VLEEEEYV+ LGEIIE D+FP+   + R  A  +   Q + P+R P    T                   +  R    D E+ +   +      L +FVATHTSEDNEAF ELQEK  E  +RRY WA+D   DG+G+     KL +L +G  +S ++R   D ACA + PK  D RP+  ETWK R RN L+F P+LA + D+CR+
Sbjct:  444 KVVLEEEEYVEALGEIIERDFFPDLPSLKRQTAVPSGWDQPS-PAREPTASGTNAL----------------VRSRTRNEDDEKSAVESEGVQNMTLNRFVATHTSEDNEAFNELQEKAIEDHQRRYHWAFDDN-DGKGD----PKLHLLTDGTWISKQQRHLADEACAPKGPK--DDRPSAPETWKFRARNPLLFPPDLATARDICRL 628
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1297.2250.1 vs. uniprot
Match: A0A329SZM5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SZM5_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.080e-27
Identity = 93/239 (38.91%), Postives = 126/239 (52.72%), Query Frame = 3 
Query:  483 KKTVLEEEEYVDRLGEIIEGDYFPNNAKMYRALAGLADHGQDNTPSRTPAGGSTVGTPVTGLRIHGEASRGDGLELRVNGGDS---------ERPSSSKDAGNGG--------ALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADR-PKIGDSRPNQVETWKHRTRNQLMFSPNLAASNDVCRIEQAPTEAAQLLL 1145
            KK VLEEEEYV+ LG+IIE D+FP+  K+ +    L D  +              G P T   +H  ++      +R     S         E+P+  +    G          L +FVATHTSEDNE+F ELQEK  +  +RRY WA+D   D E  +    KL +L NG  +S E+R+  D ACA + PK  D RP+  ETWK+R RN L+F P L A+ D+C+++  P   AQLLL
Sbjct:    3 KKVVLEEEEYVEALGQIIERDFFPDIPKLKKQTELLRDEEE--------------GLPWTDTTLHAASTSRGNASVRSGASGSGWDQPTPIVEQPAIDQAQDEGADDNAKASMTLNRFVATHTSEDNESFNELQEKAVKDHQRRYHWAFDN--DKEKGDP---KLHLLTNGTWISKEQRQIADDACAPKGPK--DDRPSAPETWKYRARNPLLFPPELEATRDICQVKADP--GAQLLL 218
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BLAST of mRNA_E-fasciculatus_F_contig1297.2250.1 vs. uniprot
Match: G4YIQ7_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YIQ7_PHYSP)

HSP 1 Score: 126 bits (317), Expect = 1.340e-27
Identity = 97/247 (39.27%), Postives = 121/247 (48.99%), Query Frame = 3 
Query:  483 KKTVLEEEEYVDRLGEIIEGDYFPNNAKMYRALAGL---------------ADHGQDNTPSRTPAGGS--TVGTPVTGLRIHGEASRGDGLELRVNGGDSERPSSSKDAGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADR-PKIGDSRPNQVETWKHRTRNQLMFSPNLAASNDVCRIEQAPTEAAQLLL---VKDRS 1160
            KK VLEEEEYVD LG+IIE D+FP+  K+ R    L               A + + N   R+ A G+     TP +G          D  E               DA     L  FVATHTSEDNE+FAELQEK     +RRY WA+D     +       KL +L NG  +S E+R   D ACA + PK  D RP+  ETW+ R RN L+F P L A+ D+C++        QLLL   VK RS
Sbjct:    3 KKVVLEEEEYVDALGQIIERDFFPDLPKLKRQTELLREEEGGVPWTDTTLRAANTRGNASVRSSASGTGWDQPTPQSGESAVDATQESDAAEA--------------DAKASMTLNHFVATHTSEDNESFAELQEKAVIDHQRRYHWAFD-----DDKKRGDPKLHLLTNGTWISKEQRRIADEACAPKGPK--DDRPSAPETWRFRARNPLLFPPELEATRDICQVRSGN----QLLLENGVKSRS 224
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1297.2250.1 vs. uniprot
Match: A0A6A4FV49_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4FV49_9STRA)

HSP 1 Score: 126 bits (317), Expect = 2.720e-27
Identity = 99/254 (38.98%), Postives = 127/254 (50.00%), Query Frame = 3 
Query:  483 KKTVLEEEEYVDRLGEIIEGDYFPNNAKMYR--------------ALAGLADHGQDNTPSRTPAGGSTVGTPVTGLRIHGEASRGDGLELRVNGG----DSERPSSSK---DAGNGGA-----------LTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADR-PKIGDSRPNQVETWKHRTRNQLMFSPNLAASNDVCRIEQAPTEAAQLLL 1145
            KK VLEEEEYV+ LG+IIE D+FP+  K+ +              AL  LA     +   R   G      P T   +    +RG+   +R +G     D   P S +   DA +  A           L  FVATHTSEDNE+F ELQ+K  +  +RRY WAYD     +       KL +L NG  +S E+R   D ACA + PK  D RP+  ETWK R RN L+F P L A+ D+CR+E  P    QLLL
Sbjct:    3 KKVVLEEEEYVEALGQIIERDFFPDLPKLKQQTEVRSIIDSACINALKSLALIASFSCCERRRGG-----IPWTDTTLQAANARGN-FSVRSSGSGTGWDHPTPQSDQSVADANHDNAAAEAEAKASMTLNHFVATHTSEDNESFVELQQKAVKDHQRRYHWAYD-----DDKERGDPKLHLLTNGTWISKEQRRIADQACAPKGPK--DDRPSAPETWKFRARNPLLFPPELEATRDICRVE--PGSGNQLLL 241
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1297.2250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRU6_ECTSI0.000e+089.51Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2P4YVG3_9STRA7.250e-3139.92Uncharacterized protein n=2 Tax=Phytophthora palmi... [more]
A0A225X327_9STRA4.660e-3041.67Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A0P1A564_PLAHL4.490e-2940.24Nuclear protein ES2 n=1 Tax=Plasmopara halstedii T... [more]
D0MY39_PHYIT1.320e-2840.45Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A662XTQ1_9STRA1.890e-2842.58Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A662XZJ0_9STRA2.830e-2841.63Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A329SZM5_9STRA1.080e-2738.91Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
G4YIQ7_PHYSP1.340e-2739.27Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A6A4FV49_9STRA2.720e-2738.98Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1297contigE-fasciculatus_F_contig1297:6264..9795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score1050.8
Seed ortholog evalue2.9e-304
Seed eggNOG ortholog2880.D8LRU6
EggNOG free text desc.Nuclear protein Es2
EggNOG OGs2E6IQ@1,2SD85@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNuclear protein DGCR14
Ec32 orthologEc-08_002490.1
Exons3
Model size2804
Cds size2199
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1297.2250.1prot_E-fasciculatus_F_contig1297.2250.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1297 6515..9441 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927801.446966-UTR-E-fasciculatus_F_contig1297:6263..65141622927801.446966-UTR-E-fasciculatus_F_contig1297:6263..6514Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1297 6264..6514 +
1695995700.6230953-UTR-E-fasciculatus_F_contig1297:6263..65141695995700.6230953-UTR-E-fasciculatus_F_contig1297:6263..6514Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1297 6264..6514 +
1622927801.5083807-UTR-E-fasciculatus_F_contig1297:9441..97951622927801.5083807-UTR-E-fasciculatus_F_contig1297:9441..9795Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1297 9442..9795 +
1695995700.6557827-UTR-E-fasciculatus_F_contig1297:9441..97951695995700.6557827-UTR-E-fasciculatus_F_contig1297:9441..9795Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1297 9442..9795 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927801.4656498-CDS-E-fasciculatus_F_contig1297:6514..70961622927801.4656498-CDS-E-fasciculatus_F_contig1297:6514..7096Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1297 6515..7096 +
1695995700.6326244-CDS-E-fasciculatus_F_contig1297:6514..70961695995700.6326244-CDS-E-fasciculatus_F_contig1297:6514..7096Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1297 6515..7096 +
1622927801.4813278-CDS-E-fasciculatus_F_contig1297:7422..76171622927801.4813278-CDS-E-fasciculatus_F_contig1297:7422..7617Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1297 7423..7617 +
1695995700.6404362-CDS-E-fasciculatus_F_contig1297:7422..76171695995700.6404362-CDS-E-fasciculatus_F_contig1297:7422..7617Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1297 7423..7617 +
1622927801.493417-CDS-E-fasciculatus_F_contig1297:8019..94411622927801.493417-CDS-E-fasciculatus_F_contig1297:8019..9441Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1297 8020..9441 +
1695995700.6481133-CDS-E-fasciculatus_F_contig1297:8019..94411695995700.6481133-CDS-E-fasciculatus_F_contig1297:8019..9441Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1297 8020..9441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1297.2250.1

>prot_E-fasciculatus_F_contig1297.2250.1 ID=prot_E-fasciculatus_F_contig1297.2250.1|Name=mRNA_E-fasciculatus_F_contig1297.2250.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=733bp
MTTNTSGDGARPKMITADGSKFEMATPSTLARLEDPRAWHARGEVGIQRP
RPRAGSGRGAVALPMAPPLPKGRSVPVKKTVLEEEEYVDRLGEIIEGDYF
PNNAKMYRALAGLADHGQDNTPSRTPAGGSTVGTPVTGLRIHGEASRGDG
LELRVNGGDSERPSSSKDAGNGGALTKFVATHTSEDNEAFAELQEKDQEA
FRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADRP
KIGDSRPNQVETWKHRTRNQLMFSPNLAASNDVCRIEQAPTEAAQLLLVK
DRSPSSTATTKRRLIKQSEEVVKRVTRAAATSTQEYADGDCDSSESSRAA
AVTVAATEGGCSSSPSSDEALTATPDQPHQGEREKQSTGPPKAGGSTQGT
EMTEPLHCAPCLDSNKGVDGFGSSGSRTDEPPAPRRPAPPVSRGSVVIKA
NPKVIQAHATRFPAPAPRKPSRGPWASPIEKPSSSRESVAELLAGTADAS
GYEEVPMTPSRVPGVDGDSPQVTWGSIDGTPMILDPRATPLPEAGGGAMD
VANFMETLGGVVGGVGQQQFEIKDLPARDKLAHRLEAVDTRRKRAKFGTS
AAADGRGTHTPAPATPMTPQTPGTGRRTPGTEKRTPRGGRTPAKGKGKAA
AVTPAARSLAARLAQRQSAGTPFGGGLTPGRQRKRTNRSGGAAGANRGGL
TPLPASPAPAKGKSGTAEGTISSLTDGLLTLK*
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mRNA from alignment at E-fasciculatus_F_contig1297:6264..9795+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1297.2250.1 ID=mRNA_E-fasciculatus_F_contig1297.2250.1|Name=mRNA_E-fasciculatus_F_contig1297.2250.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3532bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1297:6264..9795+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGCACACACCTCTGCCTCGTTGCTCGGTAACATAGCTGTTACCTCGCTC
TTCACAGCTTATCAGCACCGTTGTCGCCTTCAGCTCCGTCCTTTCTTCGA
GGTTTGTTTGAGTGACCCACACAACATCACGGACTGGGTCTCATTGTTTT
TTTACCTGCCTGTCGTGGGCCAGCCTCTTCGAGTGTGCAGTTGGGAACGA
GAGCTGTCACAGCGTTACAGCTAGCTGCTGCTGCTACGTGCTGTAGATGC
GATGACCACCAACACGTCCGGGGACGGGGCGCGGCCAAAGATGATCACTG
CGGATGGGAGTAAATTCGAAATGGCAACGCCAAGCACTCTTGCGCGGTTG
GAGGATCCACGGGCATGGCACGCACGCGGAGAGGTGGGAATACAACGCCC
GAGACCACGTGCCGGGAGCGGGCGGGGGGCAGTCGCCCTCCCCATGGCCC
CACCACTACCAAAAGGGCGATCGGTTCCTGTGAAAAAGACGGTCCTTGAG
GAGGAAGAGTACGTGGACCGCCTGGGAGAGATTATTGAGGGGGACTACTT
CCCCAACAACGCCAAGATGTATCGAGCCCTCGCTGGGCTTGCCGACCATG
GCCAAGACAACACACCTTCCCGGACACCGGCGGGTGGCTCGACGGTAGGC
ACCCCTGTGACTGGGCTACGGATTCATGGCGAGGCTTCTCGTGGGGATGG
CCTGGAGCTTCGAGTGAACGGGGGCGATTCGGAGAGACCATCGTCCTCGA
AAGACGCGGGAAACGGCGGCGCCCTTACCAAGTTCGTTGCGACACATACG
TCCGAGGACAACGAAGCCTTCGCCGAGCTACAGGTAAGGAAAAGGGCGGC
AGTAGTTTTAGTCTGGCCATCTCCTTCCAAAAATGCTCCAATGTAGCCAA
TTCATGGTTGTCATGGGTTGGTTTCAGTCTTGTGATGGCACGGGTCTTCG
TGTCCTCGCTGGCGTTGGTGGAGTTTTGGATCCCTCTGCTGCTTCAACAG
CACCGACTAATTTTTTAGCTCGTGCGCCGTGAGACGGCGAGAGCTTCAGC
AGTACTCTACAGTGCACATTCTTCCCAGCAGTACTCTACAGGGCACCTGC
TTCCCAGCAATGCCGCCTGTTTACCTTACTCAATCGCCCTGATTCGCGTT
CGATTTCAGGAGAAAGACCAGGAGGCTTTTCGGAGGCGCTATTTCTGGGC
TTACGATACCACACCAGACGGGGAGGGCAACAACGCCACGTCTACCAAGC
TGTTGATACTCCCCAACGGCAAGATGATGTCCGTGGAGCGACGGGAGCAA
ATGGACGCAGCTTGCGCAGATCGTCCAAAAATAGGAGATTCACGACCAAA
TCAGGTGAGACGTCGCAGACTCGAGTGCAGAACACATCAGCGTGGCGCGT
AGTGGTGACAATTGGAAGGGTGCTACCGCCTCGTGCTTTTCCTAACCCCA
AACATGCCAGGCTTTGTTTAGGAATCACCACATCGGTTCACGTGTTGATG
CCCTTTAGCCAGTCCTGTCACTTAAGATACCTTCGCGCTGTTAAACTTAA
AGGATCTCTGTACGGGATTTCTCCCGCCATTATTGTTGAACGACATACCT
CGTTGTTGTGGGATCACAGCAATCGCTGCATTCAGCCGACGGTATCACGG
CCATTGCTGCAGCATCGCTTCCGTATACGTAGAACGTAGAACAGATGTTT
ACCCCCACGCAGTTTTGAACAAGTTGCGTTTCACCTCTTGTCGTGCCTTG
CTGCAGGTGGAGACTTGGAAACACAGGACACGAAACCAGCTTATGTTTTC
TCCGAACCTGGCAGCGTCGAACGACGTTTGCAGAATCGAGCAAGCACCTA
CTGAGGCTGCTCAGCTTCTTCTTGTGAAGGACAGGTCGCCATCCTCGACG
GCAACAACGAAGCGAAGACTAATCAAGCAATCGGAAGAGGTCGTGAAGAG
GGTGACGCGGGCTGCAGCAACATCTACCCAAGAATATGCAGATGGTGACT
GTGATTCTTCAGAGTCGTCCCGGGCAGCCGCAGTAACAGTAGCGGCTACT
GAAGGAGGTTGTTCTTCCTCGCCCTCTAGCGATGAAGCTCTCACCGCGAC
TCCAGACCAACCGCACCAGGGCGAACGTGAAAAACAATCTACAGGGCCAC
CGAAAGCAGGAGGATCGACACAGGGGACCGAAATGACCGAACCTTTACAT
TGCGCTCCTTGCTTAGACTCGAACAAAGGCGTTGACGGTTTTGGATCATC
GGGATCACGGACCGATGAGCCGCCCGCACCACGACGACCAGCACCACCAG
TTTCACGCGGTTCGGTAGTTATCAAAGCGAACCCCAAGGTTATTCAGGCC
CATGCGACGAGGTTCCCGGCCCCCGCGCCACGGAAACCAAGCCGAGGTCC
TTGGGCATCCCCAATTGAGAAGCCGTCGTCGTCGCGGGAATCCGTTGCGG
AGCTATTGGCGGGGACAGCGGACGCGTCGGGTTACGAGGAAGTACCTATG
ACGCCTTCGAGGGTACCGGGTGTGGATGGAGACTCTCCGCAGGTCACTTG
GGGTTCCATCGATGGCACGCCCATGATCCTCGACCCGCGTGCCACCCCTC
TTCCAGAGGCCGGCGGGGGGGCCATGGACGTGGCGAACTTCATGGAGACA
CTCGGAGGCGTCGTTGGCGGGGTTGGCCAACAGCAATTCGAGATTAAGGA
TCTCCCTGCGCGAGACAAGCTCGCACACCGCCTCGAGGCCGTAGACACTC
GCCGGAAGCGAGCGAAGTTTGGGACCAGCGCGGCCGCAGACGGAAGGGGG
ACTCACACGCCCGCGCCGGCAACACCGATGACCCCTCAAACGCCCGGCAC
AGGACGACGAACCCCCGGGACGGAGAAACGAACGCCCAGGGGTGGGAGGA
CACCCGCGAAGGGAAAGGGAAAGGCTGCGGCCGTGACGCCCGCCGCTCGA
AGCCTGGCGGCGAGGCTAGCTCAGCGGCAGAGCGCCGGCACACCGTTCGG
CGGTGGGCTCACTCCCGGGCGGCAAAGAAAGCGAACGAACCGTTCGGGGG
GGGCGGCTGGTGCCAACCGAGGTGGGCTAACACCTCTGCCGGCTTCGCCT
GCCCCGGCAAAGGGGAAGTCGGGCACGGCTGAAGGCACAATATCGTCGCT
TACTGATGGTCTGTTGACCTTGAAGTGAATAAACGCGTTTCCTTTATGTT
GTTCCGGTGATGTTTCGGTTGGTGGGGTTGTGTTGATGACGTGTACCCTC
GCTGGTGGGGGTTTACGCTGTCATTACCAAGAGGATAGCTGCAGAAAAGG
GTTCATGTAAAGAGGATAGCTAGCGTCTGTATATTGAGGGTGATCGATAC
GCGTTTGGTAGGAAGTGAATGTAAATGTACTCTCCTCGAAAATCTAGCGG
TGTACCTACAGGATGACATGTCTTTTGCTCTATGAGGGGAGGTGTTTTTG
CCGCTCTTTCGTGGCACAGACACCTGGTGAATCGGAGCTGGCTTGCAATA
CGCTGGTTTGTCCTGTGTGTCAAACGTATGCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1297:6264..9795+

>mRNA_E-fasciculatus_F_contig1297.2250.1 ID=mRNA_E-fasciculatus_F_contig1297.2250.1|Name=mRNA_E-fasciculatus_F_contig1297.2250.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=4398bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1297:6264..9795+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACCACCAACACGTCCGGGGACGGGGCGCGGCCAAAGATGATCACTGC
GGATGGGAGTAAATTCGAAATGGCAACGCCAAGCACTCTTGCGCGGTTGG
AGGATCCACGGGCATGGCACGCACGCGGAGAGGTGGGAATACAACGCCCG
AGACCACGTGCCGGGAGCGGGCGGGGGGCAGTCGCCCTCCCCATGGCCCC
ACCACTACCAAAAGGGCGATCGGTTCCTGTGAAAAAGACGGTCCTTGAGG
AGGAAGAGTACGTGGACCGCCTGGGAGAGATTATTGAGGGGGACTACTTC
CCCAACAACGCCAAGATGTATCGAGCCCTCGCTGGGCTTGCCGACCATGG
CCAAGACAACACACCTTCCCGGACACCGGCGGGTGGCTCGACGGTAGGCA
CCCCTGTGACTGGGCTACGGATTCATGGCGAGGCTTCTCGTGGGGATGGC
CTGGAGCTTCGAGTGAACGGGGGCGATTCGGAGAGACCATCGTCCTCGAA
AGACGCGGGAAACGGCGGCGCCCTTACCAAGTTCGTTGCGACACATACGT
CCGAGGACAACGAAGCCTTCGCCGAGCTACAGATGACCACCAACACGTCC
GGGGACGGGGCGCGGCCAAAGATGATCACTGCGGATGGGAGTAAATTCGA
AATGGCAACGCCAAGCACTCTTGCGCGGTTGGAGGATCCACGGGCATGGC
ACGCACGCGGAGAGGTGGGAATACAACGCCCGAGACCACGTGCCGGGAGC
GGGCGGGGGGCAGTCGCCCTCCCCATGGCCCCACCACTACCAAAAGGGCG
ATCGGTTCCTGTGAAAAAGACGGTCCTTGAGGAGGAAGAGTACGTGGACC
GCCTGGGAGAGATTATTGAGGGGGACTACTTCCCCAACAACGCCAAGATG
TATCGAGCCCTCGCTGGGCTTGCCGACCATGGCCAAGACAACACACCTTC
CCGGACACCGGCGGGTGGCTCGACGGTAGGCACCCCTGTGACTGGGCTAC
GGATTCATGGCGAGGCTTCTCGTGGGGATGGCCTGGAGCTTCGAGTGAAC
GGGGGCGATTCGGAGAGACCATCGTCCTCGAAAGACGCGGGAAACGGCGG
CGCCCTTACCAAGTTCGTTGCGACACATACGTCCGAGGACAACGAAGCCT
TCGCCGAGCTACAGGAGAAAGACCAGGAGGCTTTTCGGAGGCGCTATTTC
TGGGCTTACGATACCACACCAGACGGGGAGGGCAACAACGCCACGTCTAC
CAAGCTGTTGATACTCCCCAACGGCAAGATGATGTCCGTGGAGCGACGGG
AGCAAATGGACGCAGCTTGCGCAGATCGTCCAAAAATAGGAGATTCACGA
CCAAATCAGGAGAAAGACCAGGAGGCTTTTCGGAGGCGCTATTTCTGGGC
TTACGATACCACACCAGACGGGGAGGGCAACAACGCCACGTCTACCAAGC
TGTTGATACTCCCCAACGGCAAGATGATGTCCGTGGAGCGACGGGAGCAA
ATGGACGCAGCTTGCGCAGATCGTCCAAAAATAGGAGATTCACGACCAAA
TCAGGTGGAGACTTGGAAACACAGGACACGAAACCAGCTTATGTTTTCTC
CGAACCTGGCAGCGTCGAACGACGTTTGCAGAATCGAGCAAGCACCTACT
GAGGCTGCTCAGCTTCTTCTTGTGAAGGACAGGTCGCCATCCTCGACGGC
AACAACGAAGCGAAGACTAATCAAGCAATCGGAAGAGGTCGTGAAGAGGG
TGACGCGGGCTGCAGCAACATCTACCCAAGAATATGCAGATGGTGACTGT
GATTCTTCAGAGTCGTCCCGGGCAGCCGCAGTAACAGTAGCGGCTACTGA
AGGAGGTTGTTCTTCCTCGCCCTCTAGCGATGAAGCTCTCACCGCGACTC
CAGACCAACCGCACCAGGGCGAACGTGAAAAACAATCTACAGGGCCACCG
AAAGCAGGAGGATCGACACAGGGGACCGAAATGACCGAACCTTTACATTG
CGCTCCTTGCTTAGACTCGAACAAAGGCGTTGACGGTTTTGGATCATCGG
GATCACGGACCGATGAGCCGCCCGCACCACGACGACCAGCACCACCAGTT
TCACGCGGTTCGGTAGTTATCAAAGCGAACCCCAAGGTTATTCAGGCCCA
TGCGACGAGGTTCCCGGCCCCCGCGCCACGGAAACCAAGCCGAGGTCCTT
GGGCATCCCCAATTGAGAAGCCGTCGTCGTCGCGGGAATCCGTTGCGGAG
CTATTGGCGGGGACAGCGGACGCGTCGGGTTACGAGGAAGTACCTATGAC
GCCTTCGAGGGTACCGGGTGTGGATGGAGACTCTCCGCAGGTCACTTGGG
GTTCCATCGATGGCACGCCCATGATCCTCGACCCGCGTGCCACCCCTCTT
CCAGAGGCCGGCGGGGGGGCCATGGACGTGGCGAACTTCATGGAGACACT
CGGAGGCGTCGTTGGCGGGGTTGGCCAACAGCAATTCGAGATTAAGGATC
TCCCTGCGCGAGACAAGCTCGCACACCGCCTCGAGGCCGTAGACACTCGC
CGGAAGCGAGCGAAGTTTGGGACCAGCGCGGCCGCAGACGGAAGGGGGAC
TCACACGCCCGCGCCGGCAACACCGATGACCCCTCAAACGCCCGGCACAG
GACGACGAACCCCCGGGACGGAGAAACGAACGCCCAGGGGTGGGAGGACA
CCCGCGAAGGGAAAGGGAAAGGCTGCGGCCGTGACGCCCGCCGCTCGAAG
CCTGGCGGCGAGGCTAGCTCAGCGGCAGAGCGCCGGCACACCGTTCGGCG
GTGGGCTCACTCCCGGGCGGCAAAGAAAGCGAACGAACCGTTCGGGGGGG
GCGGCTGGTGCCAACCGAGGTGGGCTAACACCTCTGCCGGCTTCGCCTGC
CCCGGCAAAGGGGAAGTCGGGCACGGCTGAAGGCACAATATCGTCGCTTA
CTGATGGTCTGTTGACCTTGAAGTGAGTGGAGACTTGGAAACACAGGACA
CGAAACCAGCTTATGTTTTCTCCGAACCTGGCAGCGTCGAACGACGTTTG
CAGAATCGAGCAAGCACCTACTGAGGCTGCTCAGCTTCTTCTTGTGAAGG
ACAGGTCGCCATCCTCGACGGCAACAACGAAGCGAAGACTAATCAAGCAA
TCGGAAGAGGTCGTGAAGAGGGTGACGCGGGCTGCAGCAACATCTACCCA
AGAATATGCAGATGGTGACTGTGATTCTTCAGAGTCGTCCCGGGCAGCCG
CAGTAACAGTAGCGGCTACTGAAGGAGGTTGTTCTTCCTCGCCCTCTAGC
GATGAAGCTCTCACCGCGACTCCAGACCAACCGCACCAGGGCGAACGTGA
AAAACAATCTACAGGGCCACCGAAAGCAGGAGGATCGACACAGGGGACCG
AAATGACCGAACCTTTACATTGCGCTCCTTGCTTAGACTCGAACAAAGGC
GTTGACGGTTTTGGATCATCGGGATCACGGACCGATGAGCCGCCCGCACC
ACGACGACCAGCACCACCAGTTTCACGCGGTTCGGTAGTTATCAAAGCGA
ACCCCAAGGTTATTCAGGCCCATGCGACGAGGTTCCCGGCCCCCGCGCCA
CGGAAACCAAGCCGAGGTCCTTGGGCATCCCCAATTGAGAAGCCGTCGTC
GTCGCGGGAATCCGTTGCGGAGCTATTGGCGGGGACAGCGGACGCGTCGG
GTTACGAGGAAGTACCTATGACGCCTTCGAGGGTACCGGGTGTGGATGGA
GACTCTCCGCAGGTCACTTGGGGTTCCATCGATGGCACGCCCATGATCCT
CGACCCGCGTGCCACCCCTCTTCCAGAGGCCGGCGGGGGGGCCATGGACG
TGGCGAACTTCATGGAGACACTCGGAGGCGTCGTTGGCGGGGTTGGCCAA
CAGCAATTCGAGATTAAGGATCTCCCTGCGCGAGACAAGCTCGCACACCG
CCTCGAGGCCGTAGACACTCGCCGGAAGCGAGCGAAGTTTGGGACCAGCG
CGGCCGCAGACGGAAGGGGGACTCACACGCCCGCGCCGGCAACACCGATG
ACCCCTCAAACGCCCGGCACAGGACGACGAACCCCCGGGACGGAGAAACG
AACGCCCAGGGGTGGGAGGACACCCGCGAAGGGAAAGGGAAAGGCTGCGG
CCGTGACGCCCGCCGCTCGAAGCCTGGCGGCGAGGCTAGCTCAGCGGCAG
AGCGCCGGCACACCGTTCGGCGGTGGGCTCACTCCCGGGCGGCAAAGAAA
GCGAACGAACCGTTCGGGGGGGGCGGCTGGTGCCAACCGAGGTGGGCTAA
CACCTCTGCCGGCTTCGCCTGCCCCGGCAAAGGGGAAGTCGGGCACGGCT
GAAGGCACAATATCGTCGCTTACTGATGGTCTGTTGACCTTGAAGTGA
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