mRNA_E-fasciculatus_F_contig12966.2246.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12966.2246.1
Unique NamemRNA_E-fasciculatus_F_contig12966.2246.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12966.2246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12966contigE-fasciculatus_F_contig12966:44..1348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927800.9420705-CDS-E-fasciculatus_F_contig12966:43..1891622927800.9420705-CDS-E-fasciculatus_F_contig12966:43..189Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12966 44..189 +
1695995700.3832526-CDS-E-fasciculatus_F_contig12966:43..1891695995700.3832526-CDS-E-fasciculatus_F_contig12966:43..189Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12966 44..189 +
1622927800.961973-CDS-E-fasciculatus_F_contig12966:1212..13481622927800.961973-CDS-E-fasciculatus_F_contig12966:1212..1348Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12966 1213..1348 +
1695995700.3951597-CDS-E-fasciculatus_F_contig12966:1212..13481695995700.3951597-CDS-E-fasciculatus_F_contig12966:1212..1348Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12966 1213..1348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12966.2246.1prot_E-fasciculatus_F_contig12966.2246.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12966 44..1348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12966.2246.1

>prot_E-fasciculatus_F_contig12966.2246.1 ID=prot_E-fasciculatus_F_contig12966.2246.1|Name=mRNA_E-fasciculatus_F_contig12966.2246.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=94bp
RAGPGCSSHRHWHIEAESVWRDEAEAISHTAVRDLVLPLASCMHNRAICV
RGDFNNSLRSTTARRQQSQTPVPRTVSPMRRVHRPAPPAPFESA
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mRNA from alignment at E-fasciculatus_F_contig12966:44..1348+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12966.2246.1 ID=mRNA_E-fasciculatus_F_contig12966.2246.1|Name=mRNA_E-fasciculatus_F_contig12966.2246.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1305bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12966:44..1348+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCGCAGGTCCTGGCTGCAGCAGTCACCGCCACTGGCATATAGAGGCAGA
GAGCGTTTGGAGGGATGAGGCGGAAGCGATCAGCCACACCGCTGTTCGCG
ACCTGGTGCTACCTCTGGCTTCATGCATGCACAACCGCGCCATATGGTGA
GAGATAGATAGGCACTACGTATGTACATGTATGTGTAGATCCGAACGGCG
CTGCCTCTATTGTTCGCGAGCTCGGCCTCTGTCGACCCCTCTCTACCGCC
ACGAGGGCTTTGCAACAGGAAGACGTAGGTACCTGACATATTGATTGATC
ATAACCCGCACGACATCGCTGCTAAGCAACAAACACGTACCCAAGCCAGT
TTTCGCGAGGAAGAGAGTTGACGGAGACGCCCATGAAGATCATCCCGACC
GGGCCATGCAAGAAGTTCATCCGTTCATCGGGATCTCTCCCTCCTCATGC
AGAAGATTTGCCCACCTTTGTTCCTACTGCTGTACCGCAGCCGGTGTGCA
GCAAGTGTACTAGCGTACTACGCCTGAAGCCGAGGCTGCCGCGTGTGCAA
CCCGTTGGTCCCGTCACAGCATGCTCCCGGAAAAACGCCCACACCAGAAG
ACAGACCATGCATGCCCCCTGCCACCAGGGATCCGCCGTACACCAACGCC
GGCAACCACCGCAGCCGTCCCGTTTAGAGTACAGGTAGCACTGCAGTATA
CCCCCCCCCGCAGTCACTCGTGGGTCGAAAACGCTTGTTAAGGCTACCGT
CTTTCCCTATTCTCCCGGCGGATGTAACCTCTAAACAATGGTGCTGGTGA
TGATCATGCCGAACAAATTCAAACCTTTTTTCCGTGCATGCTGCTACAAG
CTTCGTGTTCCATGAGGCATCTCTCTCCCTGGACTGATTTTCAGAGTTAG
CATATATATAGCTTACTCACGTGCAGCAGTTTTATCTTGTTTTTGTCTCC
GCCTCCTCCGTGTGGCTTCTTATCTCCAACGAGGTCTTGAATCTCCGTCT
AACTCGTCTCTCCACGCCCCCCCTCCCCCTCTCTCGCCTACAATAACCCG
TTGTCAAACAGACGATGCTCGCGCCACGCGTAAACCGAAGCCCTCTTAAT
ACAAACAAACCCACCATCACCACACCACTAAATACTTTCCCGCTTTGGCC
GTTTTTGCGGGGGCCCCAGTGTCCGCGGCGACTTCAACAACAGCCTTCGC
AGCACGACTGCTCGACGGCAGCAGTCACAGACACCCGTCCCTAGGACAGT
ATCGCCGATGCGGCGGGTACATCGACCCGCCCCCCCCGCGCCCTTTGAAT
CGGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12966:44..1348+

>mRNA_E-fasciculatus_F_contig12966.2246.1 ID=mRNA_E-fasciculatus_F_contig12966.2246.1|Name=mRNA_E-fasciculatus_F_contig12966.2246.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=564bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12966:44..1348+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCGCAGGTCCTGGCTGCAGCAGTCACCGCCACTGGCATATAGAGGCAGA
GAGCGTTTGGAGGGATGAGGCGGAAGCGATCAGCCACACCGCTGTTCGCG
ACCTGGTGCTACCTCTGGCTTCATGCATGCACAACCGCGCCATATGCGCG
CAGGTCCTGGCTGCAGCAGTCACCGCCACTGGCATATAGAGGCAGAGAGC
GTTTGGAGGGATGAGGCGGAAGCGATCAGCCACACCGCTGTTCGCGACCT
GGTGCTACCTCTGGCTTCATGCATGCACAACCGCGCCATATGTGTCCGCG
GCGACTTCAACAACAGCCTTCGCAGCACGACTGCTCGACGGCAGCAGTCA
CAGACACCCGTCCCTAGGACAGTATCGCCGATGCGGCGGGTACATCGACC
CGCCCCCCCCGCGCCCTTTGAATCGGCGTGTCCGCGGCGACTTCAACAAC
AGCCTTCGCAGCACGACTGCTCGACGGCAGCAGTCACAGACACCCGTCCC
TAGGACAGTATCGCCGATGCGGCGGGTACATCGACCCGCCCCCCCCGCGC
CCTTTGAATCGGCG
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