mRNA_E-fasciculatus_F_contig12963.2245.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12963.2245.1
Unique NamemRNA_E-fasciculatus_F_contig12963.2245.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12963.2245.1 vs. uniprot
Match: A0A672KEG3_SINGR (Uncharacterized protein n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672KEG3_SINGR)

HSP 1 Score: 48.5 bits (114), Expect = 5.270e-6
Identity = 23/50 (46.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query:    4 QMLLDRGASPHASTTTGSTPLLLACERGHLDTMKLIIAGGADLEASNAQG 153
            Q+LL++GA  +A    G T L LACE GHLD++KL++   AD E ++  G
Sbjct:   17 QLLLEKGADVNARDDHGRTALSLACEHGHLDSVKLLVQFSADPELTDTWG 66          
BLAST of mRNA_E-fasciculatus_F_contig12963.2245.1 vs. uniprot
Match: A0A3R7B1P6_9STRA (Uncharacterized protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7B1P6_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 6.180e-6
Identity = 20/37 (54.05%), Postives = 29/37 (78.38%), Query Frame = 1
Query:   34 HASTTTGSTPLLLACERGHLDTMKLIIAGGADLEASN 144
            H+  TTG+TPL+ AC RGH+D  K+++A GAD++A N
Sbjct:  108 HSDRTTGNTPLMAACARGHVDCAKILVAVGADVDARN 144          
BLAST of mRNA_E-fasciculatus_F_contig12963.2245.1 vs. uniprot
Match: A0A1V5K6N6_9BACT (Phosphocholine transferase AnkX n=1 Tax=Candidatus Aerophobetes bacterium ADurb.Bin490 TaxID=1852830 RepID=A0A1V5K6N6_9BACT)

HSP 1 Score: 49.7 bits (117), Expect = 1.290e-5
Identity = 22/51 (43.14%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    7 MLLDRGASPHASTTTGSTPLLLACERGHLDTMKLIIAGG--ADLEASNAQG 153
            MLL +GA+P     +GSTPL+ ACE+G ++T+K+++     AD+ AS+  G
Sbjct:    1 MLLKKGANPDVKNRSGSTPLMAACEKGSIETVKMLLMNNPKADINASDKNG 51          
BLAST of mRNA_E-fasciculatus_F_contig12963.2245.1 vs. uniprot
Match: UPI0020190763 (ankyrin repeat and SOCS box protein 3 isoform X1 n=3 Tax=Heteromyidae TaxID=10015 RepID=UPI0020190763)

HSP 1 Score: 49.7 bits (117), Expect = 1.530e-5
Identity = 22/49 (44.90%), Postives = 35/49 (71.43%), Query Frame = 1
Query:    1 VQMLLDRGASPHASTTTGSTPLLLACERGHLDTMKLIIAGGADLEASNA 147
            VQ+LL+ GA P+A+T   +TPL LA E G +D +KL++  GA++  S++
Sbjct:   95 VQILLEAGADPNATTLEETTPLFLAVENGQIDALKLLLRHGANVNGSHS 143          
BLAST of mRNA_E-fasciculatus_F_contig12963.2245.1 vs. uniprot
Match: A0A1S3AM56_ERIEU (ankyrin repeat domain-containing protein 63 n=2 Tax=Laurasiatheria TaxID=314145 RepID=A0A1S3AM56_ERIEU)

HSP 1 Score: 49.3 bits (116), Expect = 2.030e-5
Identity = 23/51 (45.10%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    1 VQMLLDRGASPHASTTTGSTPLLLACERGHLDTMKLIIAGGADLEASNAQG 153
            V++LL++GA+ +     G T L LACERGHLD ++L++    D EA++A G
Sbjct:   67 VRLLLEQGAAVNLRDERGRTALSLACERGHLDAVQLLVQFSGDPEAADAAG 117          
BLAST of mRNA_E-fasciculatus_F_contig12963.2245.1 vs. uniprot
Match: UPI0010A94B54 (LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein 63 n=1 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=UPI0010A94B54)

HSP 1 Score: 49.3 bits (116), Expect = 2.070e-5
Identity = 23/51 (45.10%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    1 VQMLLDRGASPHASTTTGSTPLLLACERGHLDTMKLIIAGGADLEASNAQG 153
            V++LL++GA+ +     G T L LACERGHLD ++L++    D EA++A G
Sbjct:   67 VRLLLEQGAAVNLRDERGRTALSLACERGHLDAVQLLVQFSGDPEAADAAG 117          
BLAST of mRNA_E-fasciculatus_F_contig12963.2245.1 vs. uniprot
Match: UPI0018F6DAD3 (LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein 63 n=1 Tax=Tachyglossus aculeatus TaxID=9261 RepID=UPI0018F6DAD3)

HSP 1 Score: 49.3 bits (116), Expect = 2.070e-5
Identity = 23/51 (45.10%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    1 VQMLLDRGASPHASTTTGSTPLLLACERGHLDTMKLIIAGGADLEASNAQG 153
            V++LL++GA+ +     G T L LACERGHLD ++L++    D EA++A G
Sbjct:   67 VRLLLEQGAAVNLRDERGRTALSLACERGHLDAVQLLVQFSGDPEAADAAG 117          
BLAST of mRNA_E-fasciculatus_F_contig12963.2245.1 vs. uniprot
Match: UPI001C54BAFE (ankyrin repeat domain-containing protein 63 n=2 Tax=Heteromyidae TaxID=10015 RepID=UPI001C54BAFE)

HSP 1 Score: 49.3 bits (116), Expect = 2.070e-5
Identity = 23/51 (45.10%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    1 VQMLLDRGASPHASTTTGSTPLLLACERGHLDTMKLIIAGGADLEASNAQG 153
            V++LL++GA+ +     G T L LACERGHLD ++L++    D EA++A G
Sbjct:   67 VRLLLEQGAAVNLRDERGRTALSLACERGHLDAVQLLVQFSGDPEAADAAG 117          
BLAST of mRNA_E-fasciculatus_F_contig12963.2245.1 vs. uniprot
Match: A0A645HLJ3_9ZZZZ (Uncharacterized protein n=1 Tax=bioreactor metagenome TaxID=1076179 RepID=A0A645HLJ3_9ZZZZ)

HSP 1 Score: 46.6 bits (109), Expect = 2.080e-5
Identity = 23/51 (45.10%), Postives = 32/51 (62.75%), Query Frame = 1
Query:    1 VQMLLDRGASPHASTTTGSTPLLLACERGHLDTMKLIIAGGADLEASNAQG 153
            V  L+ +GA P+    TG TPL  A   G+LDT+K++IAGGA    +N+ G
Sbjct:    2 VTFLIAQGADPNLQEQTGLTPLHWAASHGNLDTVKVLIAGGAAHNVANSFG 52          
BLAST of mRNA_E-fasciculatus_F_contig12963.2245.1 vs. uniprot
Match: A0A6P8RTK3_GEOSA (ankyrin repeat domain-containing protein 63 n=1 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8RTK3_GEOSA)

HSP 1 Score: 48.9 bits (115), Expect = 2.720e-5
Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = 1
Query:    1 VQMLLDRGASPHASTTTGSTPLLLACERGHLDTMKLIIAGGADLEASNAQG 153
            V++LLD+GA  +     G T L LACE GHLDT+KL++   AD E  +  G
Sbjct:   67 VRLLLDKGAHVNEEDERGRTALSLACELGHLDTVKLLVQFNADPEIPDRDG 117          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12963.2245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A672KEG3_SINGR5.270e-646.00Uncharacterized protein n=1 Tax=Sinocyclocheilus g... [more]
A0A3R7B1P6_9STRA6.180e-654.05Uncharacterized protein n=7 Tax=Aphanomyces astaci... [more]
A0A1V5K6N6_9BACT1.290e-543.14Phosphocholine transferase AnkX n=1 Tax=Candidatus... [more]
UPI00201907631.530e-544.90ankyrin repeat and SOCS box protein 3 isoform X1 n... [more]
A0A1S3AM56_ERIEU2.030e-545.10ankyrin repeat domain-containing protein 63 n=2 Ta... [more]
UPI0010A94B542.070e-545.10LOW QUALITY PROTEIN: ankyrin repeat domain-contain... [more]
UPI0018F6DAD32.070e-545.10LOW QUALITY PROTEIN: ankyrin repeat domain-contain... [more]
UPI001C54BAFE2.070e-545.10ankyrin repeat domain-containing protein 63 n=2 Ta... [more]
A0A645HLJ3_9ZZZZ2.080e-545.10Uncharacterized protein n=1 Tax=bioreactor metagen... [more]
A0A6P8RTK3_GEOSA2.720e-547.06ankyrin repeat domain-containing protein 63 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12963contigE-fasciculatus_F_contig12963:21..176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size150
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927800.8762534-CDS-E-fasciculatus_F_contig12963:20..1701622927800.8762534-CDS-E-fasciculatus_F_contig12963:20..170Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12963 21..170 -
1695995700.3648303-CDS-E-fasciculatus_F_contig12963:20..1701695995700.3648303-CDS-E-fasciculatus_F_contig12963:20..170Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12963 21..170 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927800.8935502-UTR-E-fasciculatus_F_contig12963:170..1761622927800.8935502-UTR-E-fasciculatus_F_contig12963:170..176Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12963 171..176 -
1695995700.3730202-UTR-E-fasciculatus_F_contig12963:170..1761695995700.3730202-UTR-E-fasciculatus_F_contig12963:170..176Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12963 171..176 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12963.2245.1prot_E-fasciculatus_F_contig12963.2245.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12963 21..170 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12963.2245.1

>prot_E-fasciculatus_F_contig12963.2245.1 ID=prot_E-fasciculatus_F_contig12963.2245.1|Name=mRNA_E-fasciculatus_F_contig12963.2245.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=50bp
MLLDRGASPHASTTTGSTPLLLACERGHLDTMKLIIAGGADLEASNAQGF
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mRNA from alignment at E-fasciculatus_F_contig12963:21..176-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12963.2245.1 ID=mRNA_E-fasciculatus_F_contig12963.2245.1|Name=mRNA_E-fasciculatus_F_contig12963.2245.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=156bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12963:21..176- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGCAGATGCTGCTAGACCGAGGCGCCTCCCCCCACGCCTCAACGACCAC CGGGAGCACGCCTCTGCTCCTCGCGTGCGAGCGGGGCCACTTGGACACGA TGAAGCTCATCATCGCCGGCGGGGCCGACCTCGAGGCCTCCAACGCCCAG GGTTTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12963:21..176-

>mRNA_E-fasciculatus_F_contig12963.2245.1 ID=mRNA_E-fasciculatus_F_contig12963.2245.1|Name=mRNA_E-fasciculatus_F_contig12963.2245.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=300bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12963:21..176- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTGCTAGACCGAGGCGCCTCCCCCCACGCCTCAACGACCACCGGGAG
CACGCCTCTGCTCCTCGCGTGCGAGCGGGGCCACTTGGACACGATGAAGC
TCATCATCGCCGGCGGGGCCGACCTCGAGGCCTCCAACGCCCAGGGTTTC
ATGCTGCTAGACCGAGGCGCCTCCCCCCACGCCTCAACGACCACCGGGAG
CACGCCTCTGCTCCTCGCGTGCGAGCGGGGCCACTTGGACACGATGAAGC
TCATCATCGCCGGCGGGGCCGACCTCGAGGCCTCCAACGCCCAGGGTTTC
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