mRNA_E-fasciculatus_F_contig12960.2242.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12960.2242.1
Unique NamemRNA_E-fasciculatus_F_contig12960.2242.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12960.2242.1 vs. uniprot
Match: A0A6H5KI57_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KI57_9PHAE)

HSP 1 Score: 389 bits (999), Expect = 1.700e-130
Identity = 197/212 (92.92%), Postives = 202/212 (95.28%), Query Frame = 1
Query:    1 LADASSRLETDLNAGTCHLLELMAFKSTVTRSHQQVVSEFEEMGGTTSTHGSRDQMLYCVDVLRDNLERAVELLADTLLNPRVTPEEVEEQKAVIGFQLEDTMPEVTMRESLMTAAFKGQPLGRPYWCPKSALPKLEASMVRGFRKRHFTPGNMVLAGAGVDHDELVRLGNKYFGGLEAVEGSESGDGVDAAGPAESSYVGGESRNIVGTDK 636
            + +A SRLETDLN GTCHLLELMAFKST TRSHQQVVSEFEEMGGTTSTHGSRDQMLYCVDVLRDNLERAVELLADTL+NPRVTPEEVEEQKAVIGFQLEDTMPEVTMRESLMTAAFKGQPLGRPYWCPKSALPKLEA+MVR FRKRHFTPGNMVLAGAGVDHDELVRLGNKYFGGLEAVEG  SGDGVDAAGPAESSYVGGESRN+V   K
Sbjct:  161 VVNAGSRLETDLNTGTCHLLELMAFKSTATRSHQQVVSEFEEMGGTTSTHGSRDQMLYCVDVLRDNLERAVELLADTLINPRVTPEEVEEQKAVIGFQLEDTMPEVTMRESLMTAAFKGQPLGRPYWCPKSALPKLEANMVRSFRKRHFTPGNMVLAGAGVDHDELVRLGNKYFGGLEAVEGG-SGDGVDAAGPAESSYVGGESRNVVAKHK 371          
BLAST of mRNA_E-fasciculatus_F_contig12960.2242.1 vs. uniprot
Match: A0A835Z8C4_9STRA (Mitochondrial processing peptidase alpha subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8C4_9STRA)

HSP 1 Score: 206 bits (524), Expect = 3.040e-60
Identity = 112/218 (51.38%), Postives = 143/218 (65.60%), Query Frame = 1
Query:    1 LADASSRLETDLNAGTCHLLELMAFKSTVTRSHQQV----VSEFEEMGGTTSTHGSRDQMLYCVDVLRDNLERAVELLADTLLNPRVTPEEVEEQKAVIGFQLEDTMPEVTMRESLMTAAFKGQPLGRPYWCPKSALPKLEASMVRGFRKRHFTPGNMVLAGAGVDHDELVRLGNKYFGGLEAVEGSESGDGVDAAGPAESSYVGGESR--NIVGTDK 636
            L +A SR ET+ N G  HLLELMAFKST  R+ QQ     + E E MG T + H SR+QML+CVDVLRD LE A++LL+D +L P +T EEV++QK V+ +Q+ED +P+  M+E+L  AA+ GQ LGRP+WCP  ++  L A M R FR  H+T  NMVL GAGV HDEL+RLG+KYF  L +  G+          PA S Y GGE R   +VG  K
Sbjct:  121 LVNAGSRHETEANQGVSHLLELMAFKSTPRRAQQQASTNNIIELEAMGATVTAHSSREQMLFCVDVLRDYLEPAMDLLSDVVLTPEMTEEEVDDQKVVMQYQMEDMLPDTVMKEALQGAAYPGQALGRPHWCPPESMDALSADMARQFRTEHYTAPNMVLVGAGVQHDELMRLGDKYFAPLASTAGASI-----ITSPA-SQYGGGEVRVEGVVGAQK 332          
BLAST of mRNA_E-fasciculatus_F_contig12960.2242.1 vs. uniprot
Match: A0A7S3PID5_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PID5_9STRA)

HSP 1 Score: 159 bits (403), Expect = 9.110e-45
Identity = 90/208 (43.27%), Postives = 129/208 (62.02%), Query Frame = 1
Query:    7 DASSRLETDLNAGTCHLLELMAFKSTVTRSHQQVVSEFEEMGGTTSTHGSRDQMLYCVDVLRDNLERAVELLADTLLNPRVTPEEVEEQKAVIGFQLE--DTMPEVTMRESLMTAAF-KGQPLGRPYWCPKSALPKLEASMVRGFRKRHFTPGNMVLAGAGVDHDELVRLGNKYFGGLEAVEGSESGDGVDAAGPAESSYVGGESRNI 621
            DA SR E D N+G  HLLE MAFKST  RSH ++V + E++GGT     SR+ ++Y  + LRDN+E  V+++AD++L P + P ++E+Q+ VIG++L+  +   +  + E L +AA+ +  PLG+P WCP+  L KL A  +R F  + F    MVL+GAGVDHDELV L  KYF  L       +G+   A  P  S Y GG+ R +
Sbjct:   84 DAGSRYENDSNSGVSHLLEHMAFKSTENRSHLRLVRDIEDVGGTVGAASSRECIMYTGECLRDNVETIVDVMADSILRPALKPWDIEDQREVIGYELQAMEQNAQALLTELLHSAAYGESTPLGQPLWCPERNLGKLNADTIRSFMSKTFLAKRMVLSGAGVDHDELVSLAEKYFADLATAP--PAGETEPAMLP--SPYKGGDRRYV 287          
BLAST of mRNA_E-fasciculatus_F_contig12960.2242.1 vs. uniprot
Match: A0A7S3XM65_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XM65_HETAK)

HSP 1 Score: 159 bits (403), Expect = 1.380e-44
Identity = 78/183 (42.62%), Postives = 116/183 (63.39%), Query Frame = 1
Query:    1 LADASSRLETDLNAGTCHLLELMAFKSTVTRSHQQVVSEFEEMGGTTSTHGSRDQMLYCVDVLRDNLERAVELLADTLLNPRVTPEEVEEQKAVIGFQLEDTMPEVTMRESLMTAAFKGQPLGRPYWCPKSALPKLEASMVRGFRKRHFTPGNMVLAGAGVDHDELVRLGNKYFGGLEAVEGS 549
            + DA S+ +     G  HL+ELMAFKST  R+H+QV+ E E +GG  + + +R+Q+LYCVD LRD L RA+++LAD +L PRV P+E+E+ + ++    +    ++ ++E+L  AA+KG PLGRP++CP    P L A +V  +R +  T    V+AGAGVDH E V +  + F  L A   S
Sbjct:  116 IIDAGSKYDEPAEMGATHLMELMAFKSTYKRTHEQVLGEIEGLGGMATANANREQLLYCVDCLRDALPRALDVLADGVLRPRVAPDEIEDARTLMALHADAIPADLALKEALQGAAYKGTPLGRPHFCPPERAPALGAELVHAYRAKFLTAPRAVVAGAGVDHAEFVAMVAEAFRSLPAAGSS 298          
BLAST of mRNA_E-fasciculatus_F_contig12960.2242.1 vs. uniprot
Match: A0A7S3UY37_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3UY37_9STRA)

HSP 1 Score: 159 bits (401), Expect = 1.200e-42
Identity = 90/206 (43.69%), Postives = 128/206 (62.14%), Query Frame = 1
Query:    7 DASSRLETDLNAGTCHLLELMAFKSTVTRSHQQVVSEFEEMGGTTSTHGSRDQMLYCVDVLRDNLERAVELLADTLLNPRVTPEEVEEQKAVIGFQLE--DTMPEVTMRESLMTAAF-KGQPLGRPYWCPKSALPKLEASMVRGFRKRHFTPGNMVLAGAGVDHDELVRLGNKYFGGLEAVEGSESGDGVDAAGPAESSYVGGESR 615
            DA SR E D N+G  HLLE MAFKST  RSH ++V + E++GGT     SR+ ++Y  + LRDN+E  V+++AD++L P + P ++E+Q+ VIG++L+  +   +  + E L +AA+ +  PLG+P WCP+  L KL A  +R F  + F    MVL+GAGVDHDELV L  KYF  L       +G+   A  P  S Y GG+ R
Sbjct:   84 DAGSRYENDSNSGVSHLLEHMAFKSTENRSHLRLVRDIEDVGGTVGAASSRECIMYTGECLRDNVETIVDVMADSILRPALKPWDIEDQREVIGYELQAMEQNAQALLTELLHSAAYGESTPLGQPLWCPERNLGKLNADTIRSFMSKTFLAKRMVLSGAGVDHDELVSLAEKYFADLATAP--PAGETEPAMLP--SPYKGGDRR 285          
BLAST of mRNA_E-fasciculatus_F_contig12960.2242.1 vs. uniprot
Match: K3WAT5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAT5_GLOUD)

HSP 1 Score: 157 bits (397), Expect = 8.900e-42
Identity = 86/186 (46.24%), Postives = 118/186 (63.44%), Query Frame = 1
Query:    7 DASSRLETDLNAGTCHLLELMAFKSTVTRSHQQVVSEFEEMGGTTSTHGSRDQMLYCVDVLRDNLERAVELLADTLLNPRVTPEEVEEQKAVIGFQLEDTM--PEVTMRESLMTAAF-KGQPLGRPYWCPKSALPKLEASMVRGFRKRHFTPGNMVLAGAGVDHDELVRLGNKYFGGLEAVEGSES 555
            DA SRLE D N G  HLLE + FKST TRSH ++V E E +G  T++   R+Q++Y +D+LRDN+ + VELLAD++LN  VTP+E+E  KA++ FQ ED +  P+  ++E +  AA+     LGRP  CP   +  L    V+ FR +HF    MVLAG+GVDH  LV L  K+F   +  EG E+
Sbjct:  123 DAGSRLEDDSNVGVTHLLEHLGFKSTKTRSHAELVREIETIGALTTSSCGREQIIYTIDLLRDNVVKGVELLADSVLNVDVTPDEIEGIKAIMRFQTEDLLENPQALLQEYVHAAAYGPNASLGRPLQCPLDKIDSLTLEKVQAFRNKHFVAEKMVLAGSGVDHQSLVLLAEKFFS--QIPEGGEA 306          
BLAST of mRNA_E-fasciculatus_F_contig12960.2242.1 vs. uniprot
Match: A0A6U3Q142_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3Q142_9STRA)

HSP 1 Score: 155 bits (393), Expect = 5.740e-41
Identity = 88/216 (40.74%), Postives = 126/216 (58.33%), Query Frame = 1
Query:    1 LADASSRLETDLNAGTCHLLELMAFKSTVTRSHQQVVSEFEEMGGTTSTHGSRDQMLYCVDVLRDNLERAVELLADTLLNPRVTP---EEVEEQKAVIGFQLEDTMPEVTMRESLMTAAF-------KGQPLGRPYWCPKSALPKLEASMVRGFRKRHF-TPGNMVLAGAGVDHDELVRLGNKYFGGLEAVEGSESGDGVDAAGPAESSYVGGESR 615
            L D  SR ET    G  HLLEL+AF+ST  +S  ++ S  +E+GG T    SR+QM+YC+D+LR N+  A++LL DT++ P++      EVEE K ++ +Q  D +PE+ + E L  A +       + Q LG+P++CP  ALP L A  +  FR  H   P  MV+AGAG+ HDELV L N++F  +     S  G+  +A     S+Y GGE R
Sbjct:  157 LVDVGSRHETKNEVGCNHLLELLAFRSTKFQSSVEITSRMDELGGVTFAASSREQMMYCIDILRPNVREAMKLLRDTVMYPKLEDGLYSEVEEVKRIVEYQTMDMLPEIALAEGLQIAGYGVIGNGGEVQQLGKPHFCPLEALPNLNAQTINDFRNEHLLNPSGMVIAGAGIGHDELVLLSNEFFSEI-----SGGGNPNEANRTVPSTYTGGEFR 367          
BLAST of mRNA_E-fasciculatus_F_contig12960.2242.1 vs. uniprot
Match: A0A485LBQ0_9STRA (Aste57867_18949 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBQ0_9STRA)

HSP 1 Score: 150 bits (379), Expect = 3.360e-39
Identity = 78/181 (43.09%), Postives = 112/181 (61.88%), Query Frame = 1
Query:    7 DASSRLETDLNAGTCHLLELMAFKSTVTRSHQQVVSEFEEMGGTTSTHGSRDQMLYCVDVLRDNLERAVELLADTLLNPRVTPEEVEEQKAVIGFQLEDTM--PEVTMRESLMTAAFK-GQPLGRPYWCPKSALPKLEASMVRGFRKRHFTPGNMVLAGAGVDHDELVRLGNKYFGGLEAV 540
            DA SR E D N G  H++E + FKS+VTR H ++V EFE++G  T+    R+Q++Y VDVLRDN++RA+ELLAD +L P +T +EVE  K ++  Q ED    P++ ++E + TAA+     LGRP  CP   +  L    V  + K+ F    MVLAG+G++H  LV   + YFG +  V
Sbjct:  122 DAGSRFEDDSNTGITHMMEHLGFKSSVTRPHAELVREFEDIGAQTTASSGREQLIYTVDVLRDNVDRALELLADAILRPAITDDEVEMTKTIMEIQSEDLKENPQMFLQERIHTAAYGIDHTLGRPLQCPLDKVDNLSRETVAAYMKKFFVAPRMVLAGSGIEHAALVEKAHAYFGDINPV 302          
BLAST of mRNA_E-fasciculatus_F_contig12960.2242.1 vs. uniprot
Match: A0A2R5GCH9_9STRA (Mitochondrial-processing peptidase subunit alpha n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GCH9_9STRA)

HSP 1 Score: 149 bits (375), Expect = 6.340e-39
Identity = 86/206 (41.75%), Postives = 127/206 (61.65%), Query Frame = 1
Query:    7 DASSRLETDLNAGTCHLLELMAFKSTVTRSHQQVVSEFEEMGGTTSTHGSRDQMLYCVDVLRDNLERAVELLADTLLNPRVTPEEVEEQKAVIGFQLE--DTMPEVTMRESLMTAAFKGQ-PLGRPYWCPKSALPKLEASMVRGFRKRHFTPGNMVLAGAGVDHDELVRLGNKYFGGLEAVEGSESGDGVDAAGPAESSYVGGESR 615
            DA SR ETD N G  HL+E MAFKST  RSH ++V + E++GG  +   +R+ M++  + LRD +E AV++L+DT++ P++ P +++EQ+ VIG+ LE  +   +  + E L  AA+  + PLGR  WCP+  L KL    +R + + HFT   MVL+ AGV+HD LV L +KYF  L     ++  +GVD      + Y GGE R
Sbjct:   77 DAGSRYETDANNGVSHLMEHMAFKSTENRSHLRLVRDIEDIGGQMAAASAREFMIFQGECLRDYVENAVDILSDTIVRPKLAPWDIDEQRKVIGYDLENMEANAQSVLTELLHEAAYGSETPLGRSLWCPERNLSKLGEDDLRAYLQTHFTAPRMVLSAAGVEHDRLVDLASKYFEDLP----TKPANGVDPITET-AKYRGGERR 277          
BLAST of mRNA_E-fasciculatus_F_contig12960.2242.1 vs. uniprot
Match: A0A2D4BTL4_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BTL4_PYTIN)

HSP 1 Score: 149 bits (375), Expect = 1.270e-38
Identity = 77/175 (44.00%), Postives = 112/175 (64.00%), Query Frame = 1
Query:    7 DASSRLETDLNAGTCHLLELMAFKSTVTRSHQQVVSEFEEMGGTTSTHGSRDQMLYCVDVLRDNLERAVELLADTLLNPRVTPEEVEEQKAVIGFQLEDTM--PEVTMRESLMTAAF-KGQPLGRPYWCPKSALPKLEASMVRGFRKRHFTPGNMVLAGAGVDHDELVRLGNKYF 522
            +A SR E     G  HLLE + FKST TRSH ++V E E++G  T+    R+Q++Y +DVLRDN ERA+ELLAD++L+    PEE++  K ++ +Q ED +  P+  ++E +  AA+ + Q LGRP  CP   + ++    V+ FR++HF    MVLAG+G+DH  LVRL  K F
Sbjct:  115 NAGSRYEDASEVGVTHLLEHLGFKSTTTRSHAELVREIEDIGALTTASCGREQIIYTIDVLRDNAERALELLADSVLHADFVPEEIDAIKTIMMYQTEDLLENPQALLQEYIHLAAYGQEQALGRPLQCPVDQIERITIDTVKQFRRKHFVADKMVLAGSGIDHQTLVRLAEKLF 289          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12960.2242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KI57_9PHAE1.700e-13092.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z8C4_9STRA3.040e-6051.38Mitochondrial processing peptidase alpha subunit n... [more]
A0A7S3PID5_9STRA9.110e-4543.27Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S3XM65_HETAK1.380e-4442.62Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3UY37_9STRA1.200e-4243.69Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
K3WAT5_GLOUD8.900e-4246.24Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6U3Q142_9STRA5.740e-4140.74Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A485LBQ0_9STRA3.360e-3943.09Aste57867_18949 protein n=1 Tax=Aphanomyces stella... [more]
A0A2R5GCH9_9STRA6.340e-3941.75Mitochondrial-processing peptidase subunit alpha n... [more]
A0A2D4BTL4_PYTIN1.270e-3844.00Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12960contigE-fasciculatus_F_contig12960:25..3205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score384.4
Seed ortholog evalue3.4e-104
Seed eggNOG ortholog2880.D7FU77
KEGG koko:K01412
EggNOG free text desc.protein processing involved in protein targeting to mitochondrion
EggNOG OGsCOG0612@1,KOG2067@2759
EC3.4.24.64
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMitochondrial Processing Peptidase alpha subunit
Ec32 orthologEc-25_003020.1
Exons5
Model size636
Cds size636
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12960.2242.1prot_E-fasciculatus_F_contig12960.2242.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12960 25..3205 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927800.5190392-CDS-E-fasciculatus_F_contig12960:24..1291622927800.5190392-CDS-E-fasciculatus_F_contig12960:24..129Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12960 25..129 +
1695995700.2036695-CDS-E-fasciculatus_F_contig12960:24..1291695995700.2036695-CDS-E-fasciculatus_F_contig12960:24..129Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12960 25..129 +
1622927800.537009-CDS-E-fasciculatus_F_contig12960:826..9011622927800.537009-CDS-E-fasciculatus_F_contig12960:826..901Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12960 827..901 +
1695995700.2143648-CDS-E-fasciculatus_F_contig12960:826..9011695995700.2143648-CDS-E-fasciculatus_F_contig12960:826..901Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12960 827..901 +
1622927800.5566425-CDS-E-fasciculatus_F_contig12960:1335..14341622927800.5566425-CDS-E-fasciculatus_F_contig12960:1335..1434Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12960 1336..1434 +
1695995700.225593-CDS-E-fasciculatus_F_contig12960:1335..14341695995700.225593-CDS-E-fasciculatus_F_contig12960:1335..1434Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12960 1336..1434 +
1622927800.575725-CDS-E-fasciculatus_F_contig12960:2173..23341622927800.575725-CDS-E-fasciculatus_F_contig12960:2173..2334Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12960 2174..2334 +
1695995700.237618-CDS-E-fasciculatus_F_contig12960:2173..23341695995700.237618-CDS-E-fasciculatus_F_contig12960:2173..2334Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12960 2174..2334 +
1622927800.5938692-CDS-E-fasciculatus_F_contig12960:3009..32051622927800.5938692-CDS-E-fasciculatus_F_contig12960:3009..3205Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12960 3010..3205 +
1695995700.2462032-CDS-E-fasciculatus_F_contig12960:3009..32051695995700.2462032-CDS-E-fasciculatus_F_contig12960:3009..3205Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12960 3010..3205 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12960.2242.1

>prot_E-fasciculatus_F_contig12960.2242.1 ID=prot_E-fasciculatus_F_contig12960.2242.1|Name=mRNA_E-fasciculatus_F_contig12960.2242.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=212bp
LADASSRLETDLNAGTCHLLELMAFKSTVTRSHQQVVSEFEEMGGTTSTH
GSRDQMLYCVDVLRDNLERAVELLADTLLNPRVTPEEVEEQKAVIGFQLE
DTMPEVTMRESLMTAAFKGQPLGRPYWCPKSALPKLEASMVRGFRKRHFT
PGNMVLAGAGVDHDELVRLGNKYFGGLEAVEGSESGDGVDAAGPAESSYV
GGESRNIVGTDK
back to top

mRNA from alignment at E-fasciculatus_F_contig12960:25..3205+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12960.2242.1 ID=mRNA_E-fasciculatus_F_contig12960.2242.1|Name=mRNA_E-fasciculatus_F_contig12960.2242.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3181bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12960:25..3205+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGGCGGACGCCTCCAGCCGATTGGAGACCGACCTGAACGCGGGGACATG CCATTTGCTCGAGCTCATGGCCTTCAAGAGCACAGTTACGCGCTCGCACC AGCAGGTACAGAAAAATACCGCCCGCGACGTCAGCGCTGGACCCAACAAA TTAGTTTTTGAAAATATGAAGTAACAAGTTGCCTAAATTTATCGGCGGGG CGGGGCTCGTCCCTTTTCCCGGAGAAGTTAACCTGCTCCTGTGCAAGCCC CTGCGTGCCTGTAGCTCTACAGTCGTAGGCCCCCTCCATAAGGCGGGTAT GCGTCGAACCGATTCGCGCGCCCTGTACAGAACATCCGCCTTATTCAATG TGTAGAACAACTTTCATTATTCCGTCTGTGCTAGCCAATTTTACCTGCCT TAAAGAGGATGAACCGCCTTGCAGAGGGCCTACGACTGTTTTTCGTAGTT TCAAGTCGGTTGAAATGTTGGTATTTAGTATTTAGTGTTATTTTGTACAT CGCCCGATTAGGCACGCGGGAAGGCCGTCGAACCAACAGTTGTGTGGAAT CCGCTAATGTAATGATCGTTCCTTGTGCCGCCAATCGGGTATAGTTCTAA CCTCGTCCACTTCCAGGATTGTATCGTCCACTCTATGGACTAGTCTTGCC TACTGCTGTGCGTTCGAAAACAGTTGAACGCCTTCCTGTTGTCAGCCCGA AAAATGAAGACTTCCACACGATGTTCACAGCGGTGAAAGCTTTCGATTTG TTTTTGCGATGTTTTATTAGGTGTGTTTTTATTGTGGTCTTTTTTGTCGC AGGTTGTGAGCGAATTTGAGGAAATGGGCGGAACGACATCTACACACGGC TCGCGAGATCAGATGCTGTACTGCGTGGTGAGTTTTTTTTTTTTCCTTTT TCGCTACGTATCCGTTGTTGTTGCTGCTGTTGCACACGCGGGTCCGCCCT TCAGTTGAAGGTACGGAATATTTGTGTTTTCGTGACATTTTGAGCTTGTA GGATGTTGTGGACGGTCATGACCTTGACACTGACACCCTGTCTATGCCAA CTCGCCTATAAAGCTTGCTCGTCCCGTTGGTCGTTGTTGCTGCTGCTGCC GCTGCTGCCGCTGCTGCTGCTGCTGCTGCCGCTACTGTTGTTGCTGCTGC TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGGTGGTGTTG TTCTGCTTGTTGGTGTTGGTGTTGGTGTTGCTTTTGTTGTCTTTGTCTTT TGTCGTAGAAACGAATTAACGAACGAACGACTTATCGGGATGGCATTGTT GCGAAATACAGGACGTACTGCGGGACAACCTGGAGAGGGCCGTTGAGCTG CTGGCGGACACACTCCTCAACCCTAGGGTTACGCCGGAGGAGGTGGAGGA ACAAAAGGCGGTGAGATGTTATTTATCAATAAATAGTTAGAGTCCAAGTG AGAGTGAGATATTTTAATGAGATGCAGTAAATATTTAGTGAGATTTCAAG TGAGATTTAATTAGATTTGATGTGATACTTCTTGCAGCATTCGGCAGACA TCTTCGGACCGGTAGAGCACTGTTCGTAGGTCTCCAGGTATTTACTGGTT GCATGTGCGTCATTACCCCTAGGAAGACAACTATATTTATTATTAATACC CTGGTTTCCACATCTACAACGTAGTGAGATAATTTTTGTGAGATTTTCAG AAGCAAAGTACATAGTACCACGTATGCCAGTATTCAAGGGTAGTGGGTAG TTGGATGCCATAACCAGTTGGATGCCATAACCAGCGCAGTCAGAGAATGA ACCGAAAAACTGTAGACCTGCAGGTAGCGTCCGCTAACGTCATGGATTAG TTGCTATTTCATCCCGGACTCTCATCGTGGATGGAAATGGGTTCGTGACA GTCGTGGCTCCGATGTACGAGGGTAGTGTGACAACGGCCCTCGACCCCGT TATATCGGAGCCCCCTCTTCCCCTCTTTCACTGGAATTAAAGGGTATGTA CCCAACTATCGGGTCGAGTCCGTGACAAACCATTTCGACCCTCTTGTATC GGAGCTGCCCCCTCTTATCGATGTACCTTCTTATATCCGAGCCATAAACA ACAACAACAACAACGACGACGACGACGACGACGACGACGATGATGGCAGG TGATCGGCTTCCAGCTGGAGGACACGATGCCCGAGGTGACAATGCGAGAG TCCCTCATGACGGCAGCTTTTAAGGGACAGCCTCTCGGCCGCCCGTACTG GTGCCCAAAATCGGCGCTCCCCAAGCTCGAGGCCAGCATGGTGCGGGGCT TCCGAAAGAGGTTAGCTATATTTTGACGTGCTGTGGGCAGGTTACCTTGA CGTTGTGCTTTCTCGCTCTCTTTGATGTTGGGTGGCAGCATTCGAGTGGT TTGTGCATGTATGATGTGTGGGTGACGCCCTCGAGGTGGTTTGTGCGTTC CGTTTGTAATCATAATCACGGTTCACTCTCCCTACCCGATAGAGCAATGT ATCACACGAAACTTCGATGGCCCCTGGTGCAACTTTGGTTTGGAGTACAC CCGCCCCCGCTTGAATGAACACTCGTGGTTTTATCCAAAGGAAAGTTCCT TGGCGCGAGGAGGTGGCCTTCAATTTGTGTCCCCCCCCCCTTTTGTTTAC ATTCTGCGGGGCCCCATGCTTTTGAAACAAAGAAAAAAATGTTATCCGTA AAACGGGGAGTGTCGTTATTGTTGGTGTCCTTATAATGTGTGGGTGACTG TACAAGAGAGACCATGGCAATGCACAAAACACACAGCATGCACACGATGT TTCAGGTCCATCATTCGGCCTGGTGACCCTCTTCGCAGCCTCGATGTAAA ATCTCGTGTTTTCACCACGTTGTGATCGATGTCTTCATCCTAACAGAACA AGACAAGGCGTTCACCCCAACATCTATACGATATGCACTCCTTCGCCACC TATACCGCCGCGCGCACCGGGTACACCACACGCAGGCATTTCACGCCGGG GAACATGGTGCTGGCGGGGGCGGGGGTAGACCACGATGAGCTCGTCCGAT TGGGGAACAAGTACTTCGGAGGGCTCGAAGCCGTGGAGGGCAGTGAGAGC GGGGATGGTGTTGACGCTGCCGGACCGGCCGAGTCGAGCTACGTCGGGGG AGAGTCGCGCAACATCGTTGGCACGGATAAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12960:25..3205+

>mRNA_E-fasciculatus_F_contig12960.2242.1 ID=mRNA_E-fasciculatus_F_contig12960.2242.1|Name=mRNA_E-fasciculatus_F_contig12960.2242.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1272bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12960:25..3205+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGGCGGACGCCTCCAGCCGATTGGAGACCGACCTGAACGCGGGGACATG
CCATTTGCTCGAGCTCATGGCCTTCAAGAGCACAGTTACGCGCTCGCACC
AGCAGTTGGCGGACGCCTCCAGCCGATTGGAGACCGACCTGAACGCGGGG
ACATGCCATTTGCTCGAGCTCATGGCCTTCAAGAGCACAGTTACGCGCTC
GCACCAGCAGGTTGTGAGCGAATTTGAGGAAATGGGCGGAACGACATCTA
CACACGGCTCGCGAGATCAGATGCTGTACTGCGTGGTTGTGAGCGAATTT
GAGGAAATGGGCGGAACGACATCTACACACGGCTCGCGAGATCAGATGCT
GTACTGCGTGGACGTACTGCGGGACAACCTGGAGAGGGCCGTTGAGCTGC
TGGCGGACACACTCCTCAACCCTAGGGTTACGCCGGAGGAGGTGGAGGAA
CAAAAGGCGGACGTACTGCGGGACAACCTGGAGAGGGCCGTTGAGCTGCT
GGCGGACACACTCCTCAACCCTAGGGTTACGCCGGAGGAGGTGGAGGAAC
AAAAGGCGGTGATCGGCTTCCAGCTGGAGGACACGATGCCCGAGGTGACA
ATGCGAGAGTCCCTCATGACGGCAGCTTTTAAGGGACAGCCTCTCGGCCG
CCCGTACTGGTGCCCAAAATCGGCGCTCCCCAAGCTCGAGGCCAGCATGG
TGCGGGGCTTCCGAAAGAGGTGATCGGCTTCCAGCTGGAGGACACGATGC
CCGAGGTGACAATGCGAGAGTCCCTCATGACGGCAGCTTTTAAGGGACAG
CCTCTCGGCCGCCCGTACTGGTGCCCAAAATCGGCGCTCCCCAAGCTCGA
GGCCAGCATGGTGCGGGGCTTCCGAAAGAGGCATTTCACGCCGGGGAACA
TGGTGCTGGCGGGGGCGGGGGTAGACCACGATGAGCTCGTCCGATTGGGG
AACAAGTACTTCGGAGGGCTCGAAGCCGTGGAGGGCAGTGAGAGCGGGGA
TGGTGTTGACGCTGCCGGACCGGCCGAGTCGAGCTACGTCGGGGGAGAGT
CGCGCAACATCGTTGGCACGGATAAGGCATTTCACGCCGGGGAACATGGT
GCTGGCGGGGGCGGGGGTAGACCACGATGAGCTCGTCCGATTGGGGAACA
AGTACTTCGGAGGGCTCGAAGCCGTGGAGGGCAGTGAGAGCGGGGATGGT
GTTGACGCTGCCGGACCGGCCGAGTCGAGCTACGTCGGGGGAGAGTCGCG
CAACATCGTTGGCACGGATAAG
back to top