mRNA_E-fasciculatus_F_contig1296.2240.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1296.2240.1
Unique NamemRNA_E-fasciculatus_F_contig1296.2240.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1296.2240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1296contigE-fasciculatus_F_contig1296:7012..7845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionArmadillo-like helical
Ec32 orthologEc-19_004110.3
Hectar predicted targeting categoryother localisation
Exons2
Model size330
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927799.9044495-CDS-E-fasciculatus_F_contig1296:7011..71101622927799.9044495-CDS-E-fasciculatus_F_contig1296:7011..7110Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1296 7012..7110 +
1695995699.8821082-CDS-E-fasciculatus_F_contig1296:7011..71101695995699.8821082-CDS-E-fasciculatus_F_contig1296:7011..7110Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1296 7012..7110 +
1622927799.9245083-CDS-E-fasciculatus_F_contig1296:7615..78431622927799.9245083-CDS-E-fasciculatus_F_contig1296:7615..7843Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1296 7616..7843 +
1695995699.9021168-CDS-E-fasciculatus_F_contig1296:7615..78431695995699.9021168-CDS-E-fasciculatus_F_contig1296:7615..7843Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1296 7616..7843 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1296.2240.1prot_E-fasciculatus_F_contig1296.2240.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1296 7012..7843 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1296.2240.1

>prot_E-fasciculatus_F_contig1296.2240.1 ID=prot_E-fasciculatus_F_contig1296.2240.1|Name=mRNA_E-fasciculatus_F_contig1296.2240.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=109bp
ESSGEPLPQLKFTPGDEPHTPRAGSPGFQNGHWVIARPKLATPTIYQHAR
SPANDHSSLGLGETTPPTTTRAGFRAESRNRRSTTRQSDASWNVDGSGSW
AQDGDRGAG
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mRNA from alignment at E-fasciculatus_F_contig1296:7012..7845+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1296.2240.1 ID=mRNA_E-fasciculatus_F_contig1296.2240.1|Name=mRNA_E-fasciculatus_F_contig1296.2240.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=834bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1296:7012..7845+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGTCATCTGGAGAACCGCTTCCGCAGCTCAAGTTCACGCCAGGGGACGA
GCCTCATACACCCAGGGCTGGGTCACCGGGCTTTCAAAATGGGCACTGGG
CAAGTGTTGTTTCTCCAGTCTTGATCATGCCATATCACCCCCAAGTGTCT
GGCAGTTTTCCGCTGCGAATTTGCCATGTGGGACGACCAGAACGAGTTGA
CACATTGTTGCGCCACATACCATTACATAGTTTCGAAGTACAACAACCAC
CGGAGCGATGCGGATGTCAACGCAAACGTAACCAGTACTAATTAGAGAAT
TGTGAGTGCTGAAAGCCTTTTTTCAGTAAGTGTCAACTGCTCAGCTCCCA
AGAACAATGCTTGTGGATGCTCATCAACACTCTTCTTGATGGGTGCAAGT
TCGGTACTGTCAAGTGTAGAACGTTGCACTCGCTGAGACCCTACGTCCGT
AGCGTACCGCACAGAGAGGTATGAAGAAACTTAGCGATCCCAACATTCAC
TCCTCCATAACAGCAAGCATTTCTTGCTCCCCTCGACCCATCGACAGGGC
CGCGGCGTTCCTTCTTTGTTAATGTCTTAGACTTCCTTGCTCGCGGATTC
TCAGGTCATCGCACGCCCAAAGCTTGCCACTCCCACCATCTACCAACACG
CACGGAGCCCGGCCAACGACCACAGCTCCCTGGGACTCGGCGAGACAACA
CCTCCCACAACAACACGGGCGGGCTTCCGTGCGGAAAGTAGAAATCGCAG
ATCGACGACGCGGCAATCCGATGCTTCATGGAACGTGGACGGCAGCGGCA
GTTGGGCGCAAGATGGAGACAGGGGTGCGGGCGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1296:7012..7845+

>mRNA_E-fasciculatus_F_contig1296.2240.1 ID=mRNA_E-fasciculatus_F_contig1296.2240.1|Name=mRNA_E-fasciculatus_F_contig1296.2240.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=654bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1296:7012..7845+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGTCATCTGGAGAACCGCTTCCGCAGCTCAAGTTCACGCCAGGGGACGA
GCCTCATACACCCAGGGCTGGGTCACCGGGCTTTCAAAATGGGCACTGGG
AGTCATCTGGAGAACCGCTTCCGCAGCTCAAGTTCACGCCAGGGGACGAG
CCTCATACACCCAGGGCTGGGTCACCGGGCTTTCAAAATGGGCACTGGGT
CATCGCACGCCCAAAGCTTGCCACTCCCACCATCTACCAACACGCACGGA
GCCCGGCCAACGACCACAGCTCCCTGGGACTCGGCGAGACAACACCTCCC
ACAACAACACGGGCGGGCTTCCGTGCGGAAAGTAGAAATCGCAGATCGAC
GACGCGGCAATCCGATGCTTCATGGAACGTGGACGGCAGCGGCAGTTGGG
CGCAAGATGGAGACAGGGGTGCGGGCGTCATCGCACGCCCAAAGCTTGCC
ACTCCCACCATCTACCAACACGCACGGAGCCCGGCCAACGACCACAGCTC
CCTGGGACTCGGCGAGACAACACCTCCCACAACAACACGGGCGGGCTTCC
GTGCGGAAAGTAGAAATCGCAGATCGACGACGCGGCAATCCGATGCTTCA
TGGAACGTGGACGGCAGCGGCAGTTGGGCGCAAGATGGAGACAGGGGTGC
GGGC
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