mRNA_E-fasciculatus_F_contig12955.2238.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12955.2238.1 vs. uniprot
Match: A0A6H5JB93_9PHAE (Cytochrome b5 heme-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JB93_9PHAE) HSP 1 Score: 188 bits (478), Expect = 4.460e-56 Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 1
Query: 1 RLQVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKQHDVHYHEASMWEGTKEVLSHLSDVSAEFIAEFPAM 264
+LQVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKQHDVHYHEASMWEGTKEVLSHLSDVSAEFIAEFPAM
Sbjct: 392 KLQVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKQHDVHYHEASMWEGTKEVLSHLSDVSAEFIAEFPAM 479
BLAST of mRNA_E-fasciculatus_F_contig12955.2238.1 vs. uniprot
Match: A0A812UH41_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UH41_SYMMI) HSP 1 Score: 149 bits (375), Expect = 2.610e-42 Identity = 67/88 (76.14%), Postives = 73/88 (82.95%), Query Frame = 1
Query: 1 RLQVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKQHDVHYHEASMWEGTKEVLSHLSDVSAEFIAEFPAM 264
+LQV+TTRN+TST FVDWFCGGLQYQVDHHLFP +PRHNL+K H LVESFCK V YHE MW GTKEVL HLS VS EF+ EFPAM
Sbjct: 228 KLQVSTTRNITSTWFVDWFCGGLQYQVDHHLFPSLPRHNLKKAHELVESFCKSEGVTYHETDMWVGTKEVLMHLSKVSREFVTEFPAM 315
BLAST of mRNA_E-fasciculatus_F_contig12955.2238.1 vs. uniprot
Match: A0A6V1P576_HETAK (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A6V1P576_HETAK) HSP 1 Score: 147 bits (371), Expect = 2.140e-40 Identity = 66/88 (75.00%), Postives = 73/88 (82.95%), Query Frame = 1
Query: 1 RLQVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKQHDVHYHEASMWEGTKEVLSHLSDVSAEFIAEFPAM 264
+LQVTTTRN+TS FVDWFCGGLQYQVDHHLFP IPRHNL+K H LV FCK+H V YHE +MW GTKEVLS L++VS EF EFPAM
Sbjct: 383 KLQVTTTRNITSNWFVDWFCGGLQYQVDHHLFPMIPRHNLKKTHQLVTGFCKEHSVTYHETNMWVGTKEVLSFLNNVSTEFFTEFPAM 470
BLAST of mRNA_E-fasciculatus_F_contig12955.2238.1 vs. uniprot
Match: A0A1S7C7Q7_9STRA (Delta-6 fatty acid desaturase n=2 Tax=Nannochloropsis TaxID=5748 RepID=A0A1S7C7Q7_9STRA) HSP 1 Score: 142 bits (359), Expect = 1.270e-38 Identity = 64/88 (72.73%), Postives = 72/88 (81.82%), Query Frame = 1
Query: 1 RLQVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKQHDVHYHEASMWEGTKEVLSHLSDVSAEFIAEFPAM 264
+LQVTTTRNVT + V WFCGGL YQVDHHLFP IPRH L K+H LVE FCK H V YHE +MWEGTKEVL+HLS V+ EF+A+FPAM
Sbjct: 387 KLQVTTTRNVTGSWLVQWFCGGLGYQVDHHLFPMIPRHRLGKLHGLVEGFCKDHGVKYHETNMWEGTKEVLAHLSSVTKEFVADFPAM 474
BLAST of mRNA_E-fasciculatus_F_contig12955.2238.1 vs. uniprot
Match: A0A835YIW8_9STRA (Delta-6 fatty acid desaturase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIW8_9STRA) HSP 1 Score: 139 bits (350), Expect = 2.490e-37 Identity = 65/88 (73.86%), Postives = 71/88 (80.68%), Query Frame = 1
Query: 1 RLQVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKQHDVHYHEASMWEGTKEVLSHLSDVSAEFIAEFPAM 264
+LQVTTTRNV+ FVDWFCGGLQYQVDHHLFP IPRHNL KVH V +FCK++ V YHEASM GT EVLSHL VS +FI EFPAM
Sbjct: 385 KLQVTTTRNVSPNLFVDWFCGGLQYQVDHHLFPSIPRHNLPKVHAAVAAFCKENGVEYHEASMLAGTVEVLSHLKGVSTQFIGEFPAM 472
BLAST of mRNA_E-fasciculatus_F_contig12955.2238.1 vs. uniprot
Match: A0A7S2XQ84_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQ84_9STRA) HSP 1 Score: 138 bits (348), Expect = 5.860e-37 Identity = 66/97 (68.04%), Postives = 74/97 (76.29%), Query Frame = 1
Query: 1 RLQVTTTRNVTS-----TPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKQHDVHYHEASMWEGTKEVLSHLSDVSAEFIAE----FPAM 264
+LQVTTTRN+T FVDWFCGGLQYQVDHHLFP +PRHNL+K H L+ESFCK+ DV YHEA +WEGT EVL HLS VS +FI E FPAM
Sbjct: 390 KLQVTTTRNITGGHGIPQAFVDWFCGGLQYQVDHHLFPMMPRHNLKKTHVLIESFCKEWDVQYHEADLWEGTLEVLQHLSKVSDDFIVEMIQEFPAM 486
BLAST of mRNA_E-fasciculatus_F_contig12955.2238.1 vs. uniprot
Match: A0A835YVN5_9STRA (Delta-6 desaturase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVN5_9STRA) HSP 1 Score: 138 bits (347), Expect = 6.510e-37 Identity = 64/88 (72.73%), Postives = 72/88 (81.82%), Query Frame = 1
Query: 1 RLQVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKQHDVHYHEASMWEGTKEVLSHLSDVSAEFIAEFPAM 264
+LQVTTTRNV+ FVDWFCGGLQYQVDHHLFP IPRHNL+KVH LV +FC+++ V YHEASM GT EVL HL +VS FI EFPAM
Sbjct: 382 KLQVTTTRNVSPNLFVDWFCGGLQYQVDHHLFPSIPRHNLKKVHALVAAFCRENGVAYHEASMLAGTGEVLGHLKEVSEAFIHEFPAM 469
BLAST of mRNA_E-fasciculatus_F_contig12955.2238.1 vs. uniprot
Match: A0A4D9CU91_9STRA (Cytochrome b5 heme-binding domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CU91_9STRA) HSP 1 Score: 137 bits (346), Expect = 9.870e-37 Identity = 61/88 (69.32%), Postives = 71/88 (80.68%), Query Frame = 1
Query: 1 RLQVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKQHDVHYHEASMWEGTKEVLSHLSDVSAEFIAEFPAM 264
+LQVTTTRNVT + WFCGGL YQVDHHLFP IPRH L ++H LVESFCK+H V YHE SMWEGT EVL+HL+ V+ EF+ +FPAM
Sbjct: 388 KLQVTTTRNVTGGWLIQWFCGGLGYQVDHHLFPMIPRHRLGQLHGLVESFCKEHGVKYHETSMWEGTLEVLAHLASVTKEFVTDFPAM 475
BLAST of mRNA_E-fasciculatus_F_contig12955.2238.1 vs. uniprot
Match: K3XBD2_GLOUD (FA_desaturase domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBD2_GLOUD) HSP 1 Score: 128 bits (322), Expect = 2.540e-36 Identity = 53/88 (60.23%), Postives = 70/88 (79.55%), Query Frame = 1
Query: 1 RLQVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKQHDVHYHEASMWEGTKEVLSHLSDVSAEFIAEFPAM 264
+LQVTTTRN+T + F+DWF GGL YQ+DHHLFP +PRHNL KV+ L++S CK+ D+ +HE W+G EV+ HL+D+S EF+ EFPAM
Sbjct: 56 QLQVTTTRNITPSLFMDWFTGGLNYQIDHHLFPLVPRHNLPKVNVLIKSLCKEFDIPFHETGFWQGIYEVVDHLADISKEFVMEFPAM 143
BLAST of mRNA_E-fasciculatus_F_contig12955.2238.1 vs. uniprot
Match: A0A7S1Y960_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y960_9STRA) HSP 1 Score: 124 bits (312), Expect = 2.720e-35 Identity = 59/90 (65.56%), Postives = 67/90 (74.44%), Query Frame = 1
Query: 1 RLQVTTTRNVTS-----TPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKQHDVHYHEASMWEGTKEVLSHLSDVSAEFIAEF 255
+LQVTTTRNVT FVDWFCGGLQYQVDHHLFP +PRH+L+K H LV SFCK+ V YHEA M +GT EVL HL VS EF+ +F
Sbjct: 9 KLQVTTTRNVTGGHGIPQAFVDWFCGGLQYQVDHHLFPTLPRHSLKKAHALVASFCKEWGVKYHEADMVDGTMEVLQHLKSVSDEFVIDF 98 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12955.2238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12955.2238.1 >prot_E-fasciculatus_F_contig12955.2238.1 ID=prot_E-fasciculatus_F_contig12955.2238.1|Name=mRNA_E-fasciculatus_F_contig12955.2238.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=89bp RLQVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFback to top mRNA from alignment at E-fasciculatus_F_contig12955:3149..3737- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12955.2238.1 ID=mRNA_E-fasciculatus_F_contig12955.2238.1|Name=mRNA_E-fasciculatus_F_contig12955.2238.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=589bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12955:3149..3737- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12955:3149..3737- >mRNA_E-fasciculatus_F_contig12955.2238.1 ID=mRNA_E-fasciculatus_F_contig12955.2238.1|Name=mRNA_E-fasciculatus_F_contig12955.2238.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=534bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12955:3149..3737- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |