mRNA_E-fasciculatus_F_contig12955.2238.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12955.2238.1
Unique NamemRNA_E-fasciculatus_F_contig12955.2238.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12955.2238.1 vs. uniprot
Match: A0A6H5JB93_9PHAE (Cytochrome b5 heme-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JB93_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 4.460e-56
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 1
Query:    1 RLQVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKQHDVHYHEASMWEGTKEVLSHLSDVSAEFIAEFPAM 264
            +LQVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKQHDVHYHEASMWEGTKEVLSHLSDVSAEFIAEFPAM
Sbjct:  392 KLQVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKQHDVHYHEASMWEGTKEVLSHLSDVSAEFIAEFPAM 479          
BLAST of mRNA_E-fasciculatus_F_contig12955.2238.1 vs. uniprot
Match: A0A812UH41_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UH41_SYMMI)

HSP 1 Score: 149 bits (375), Expect = 2.610e-42
Identity = 67/88 (76.14%), Postives = 73/88 (82.95%), Query Frame = 1
Query:    1 RLQVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKQHDVHYHEASMWEGTKEVLSHLSDVSAEFIAEFPAM 264
            +LQV+TTRN+TST FVDWFCGGLQYQVDHHLFP +PRHNL+K H LVESFCK   V YHE  MW GTKEVL HLS VS EF+ EFPAM
Sbjct:  228 KLQVSTTRNITSTWFVDWFCGGLQYQVDHHLFPSLPRHNLKKAHELVESFCKSEGVTYHETDMWVGTKEVLMHLSKVSREFVTEFPAM 315          
BLAST of mRNA_E-fasciculatus_F_contig12955.2238.1 vs. uniprot
Match: A0A6V1P576_HETAK (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A6V1P576_HETAK)

HSP 1 Score: 147 bits (371), Expect = 2.140e-40
Identity = 66/88 (75.00%), Postives = 73/88 (82.95%), Query Frame = 1
Query:    1 RLQVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKQHDVHYHEASMWEGTKEVLSHLSDVSAEFIAEFPAM 264
            +LQVTTTRN+TS  FVDWFCGGLQYQVDHHLFP IPRHNL+K H LV  FCK+H V YHE +MW GTKEVLS L++VS EF  EFPAM
Sbjct:  383 KLQVTTTRNITSNWFVDWFCGGLQYQVDHHLFPMIPRHNLKKTHQLVTGFCKEHSVTYHETNMWVGTKEVLSFLNNVSTEFFTEFPAM 470          
BLAST of mRNA_E-fasciculatus_F_contig12955.2238.1 vs. uniprot
Match: A0A1S7C7Q7_9STRA (Delta-6 fatty acid desaturase n=2 Tax=Nannochloropsis TaxID=5748 RepID=A0A1S7C7Q7_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.270e-38
Identity = 64/88 (72.73%), Postives = 72/88 (81.82%), Query Frame = 1
Query:    1 RLQVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKQHDVHYHEASMWEGTKEVLSHLSDVSAEFIAEFPAM 264
            +LQVTTTRNVT +  V WFCGGL YQVDHHLFP IPRH L K+H LVE FCK H V YHE +MWEGTKEVL+HLS V+ EF+A+FPAM
Sbjct:  387 KLQVTTTRNVTGSWLVQWFCGGLGYQVDHHLFPMIPRHRLGKLHGLVEGFCKDHGVKYHETNMWEGTKEVLAHLSSVTKEFVADFPAM 474          
BLAST of mRNA_E-fasciculatus_F_contig12955.2238.1 vs. uniprot
Match: A0A835YIW8_9STRA (Delta-6 fatty acid desaturase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIW8_9STRA)

HSP 1 Score: 139 bits (350), Expect = 2.490e-37
Identity = 65/88 (73.86%), Postives = 71/88 (80.68%), Query Frame = 1
Query:    1 RLQVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKQHDVHYHEASMWEGTKEVLSHLSDVSAEFIAEFPAM 264
            +LQVTTTRNV+   FVDWFCGGLQYQVDHHLFP IPRHNL KVH  V +FCK++ V YHEASM  GT EVLSHL  VS +FI EFPAM
Sbjct:  385 KLQVTTTRNVSPNLFVDWFCGGLQYQVDHHLFPSIPRHNLPKVHAAVAAFCKENGVEYHEASMLAGTVEVLSHLKGVSTQFIGEFPAM 472          
BLAST of mRNA_E-fasciculatus_F_contig12955.2238.1 vs. uniprot
Match: A0A7S2XQ84_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQ84_9STRA)

HSP 1 Score: 138 bits (348), Expect = 5.860e-37
Identity = 66/97 (68.04%), Postives = 74/97 (76.29%), Query Frame = 1
Query:    1 RLQVTTTRNVTS-----TPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKQHDVHYHEASMWEGTKEVLSHLSDVSAEFIAE----FPAM 264
            +LQVTTTRN+T        FVDWFCGGLQYQVDHHLFP +PRHNL+K H L+ESFCK+ DV YHEA +WEGT EVL HLS VS +FI E    FPAM
Sbjct:  390 KLQVTTTRNITGGHGIPQAFVDWFCGGLQYQVDHHLFPMMPRHNLKKTHVLIESFCKEWDVQYHEADLWEGTLEVLQHLSKVSDDFIVEMIQEFPAM 486          
BLAST of mRNA_E-fasciculatus_F_contig12955.2238.1 vs. uniprot
Match: A0A835YVN5_9STRA (Delta-6 desaturase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVN5_9STRA)

HSP 1 Score: 138 bits (347), Expect = 6.510e-37
Identity = 64/88 (72.73%), Postives = 72/88 (81.82%), Query Frame = 1
Query:    1 RLQVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKQHDVHYHEASMWEGTKEVLSHLSDVSAEFIAEFPAM 264
            +LQVTTTRNV+   FVDWFCGGLQYQVDHHLFP IPRHNL+KVH LV +FC+++ V YHEASM  GT EVL HL +VS  FI EFPAM
Sbjct:  382 KLQVTTTRNVSPNLFVDWFCGGLQYQVDHHLFPSIPRHNLKKVHALVAAFCRENGVAYHEASMLAGTGEVLGHLKEVSEAFIHEFPAM 469          
BLAST of mRNA_E-fasciculatus_F_contig12955.2238.1 vs. uniprot
Match: A0A4D9CU91_9STRA (Cytochrome b5 heme-binding domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CU91_9STRA)

HSP 1 Score: 137 bits (346), Expect = 9.870e-37
Identity = 61/88 (69.32%), Postives = 71/88 (80.68%), Query Frame = 1
Query:    1 RLQVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKQHDVHYHEASMWEGTKEVLSHLSDVSAEFIAEFPAM 264
            +LQVTTTRNVT    + WFCGGL YQVDHHLFP IPRH L ++H LVESFCK+H V YHE SMWEGT EVL+HL+ V+ EF+ +FPAM
Sbjct:  388 KLQVTTTRNVTGGWLIQWFCGGLGYQVDHHLFPMIPRHRLGQLHGLVESFCKEHGVKYHETSMWEGTLEVLAHLASVTKEFVTDFPAM 475          
BLAST of mRNA_E-fasciculatus_F_contig12955.2238.1 vs. uniprot
Match: K3XBD2_GLOUD (FA_desaturase domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBD2_GLOUD)

HSP 1 Score: 128 bits (322), Expect = 2.540e-36
Identity = 53/88 (60.23%), Postives = 70/88 (79.55%), Query Frame = 1
Query:    1 RLQVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKQHDVHYHEASMWEGTKEVLSHLSDVSAEFIAEFPAM 264
            +LQVTTTRN+T + F+DWF GGL YQ+DHHLFP +PRHNL KV+ L++S CK+ D+ +HE   W+G  EV+ HL+D+S EF+ EFPAM
Sbjct:   56 QLQVTTTRNITPSLFMDWFTGGLNYQIDHHLFPLVPRHNLPKVNVLIKSLCKEFDIPFHETGFWQGIYEVVDHLADISKEFVMEFPAM 143          
BLAST of mRNA_E-fasciculatus_F_contig12955.2238.1 vs. uniprot
Match: A0A7S1Y960_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y960_9STRA)

HSP 1 Score: 124 bits (312), Expect = 2.720e-35
Identity = 59/90 (65.56%), Postives = 67/90 (74.44%), Query Frame = 1
Query:    1 RLQVTTTRNVTS-----TPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKQHDVHYHEASMWEGTKEVLSHLSDVSAEFIAEF 255
            +LQVTTTRNVT        FVDWFCGGLQYQVDHHLFP +PRH+L+K H LV SFCK+  V YHEA M +GT EVL HL  VS EF+ +F
Sbjct:    9 KLQVTTTRNVTGGHGIPQAFVDWFCGGLQYQVDHHLFPTLPRHSLKKAHALVASFCKEWGVKYHEADMVDGTMEVLQHLKSVSDEFVIDF 98          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12955.2238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JB93_9PHAE4.460e-5698.86Cytochrome b5 heme-binding domain-containing prote... [more]
A0A812UH41_SYMMI2.610e-4276.14Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
A0A6V1P576_HETAK2.140e-4075.00Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
A0A1S7C7Q7_9STRA1.270e-3872.73Delta-6 fatty acid desaturase n=2 Tax=Nannochlorop... [more]
A0A835YIW8_9STRA2.490e-3773.86Delta-6 fatty acid desaturase n=1 Tax=Tribonema mi... [more]
A0A7S2XQ84_9STRA5.860e-3768.04Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A835YVN5_9STRA6.510e-3772.73Delta-6 desaturase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A4D9CU91_9STRA9.870e-3769.32Cytochrome b5 heme-binding domain-containing prote... [more]
K3XBD2_GLOUD2.540e-3660.23FA_desaturase domain-containing protein n=1 Tax=Gl... [more]
A0A7S1Y960_9STRA2.720e-3565.56Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12955contigE-fasciculatus_F_contig12955:3149..3737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score189.5
Seed ortholog evalue6.7e-46
Seed eggNOG ortholog2880.D8LQU3
KEGG koko:K21737
EggNOG free text desc.unsaturated fatty acid biosynthetic process
EggNOG OGsCOG3239@1,KOG4232@2759
EC1.14.19.38,1.14.19.47
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size267
Cds size267
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927799.8544035-CDS-E-fasciculatus_F_contig12955:3148..32891622927799.8544035-CDS-E-fasciculatus_F_contig12955:3148..3289Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12955 3149..3289 -
1695995699.8535557-CDS-E-fasciculatus_F_contig12955:3148..32891695995699.8535557-CDS-E-fasciculatus_F_contig12955:3148..3289Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12955 3149..3289 -
1622927799.8662035-CDS-E-fasciculatus_F_contig12955:3611..37371622927799.8662035-CDS-E-fasciculatus_F_contig12955:3611..3737Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12955 3612..3737 -
1695995699.865771-CDS-E-fasciculatus_F_contig12955:3611..37371695995699.865771-CDS-E-fasciculatus_F_contig12955:3611..3737Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12955 3612..3737 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12955.2238.1prot_E-fasciculatus_F_contig12955.2238.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12955 3149..3737 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12955.2238.1

>prot_E-fasciculatus_F_contig12955.2238.1 ID=prot_E-fasciculatus_F_contig12955.2238.1|Name=mRNA_E-fasciculatus_F_contig12955.2238.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=89bp
RLQVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESF
CKQHDVHYHEASMWEGTKEVLSHLSDVSAEFIAEFPAM*
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mRNA from alignment at E-fasciculatus_F_contig12955:3149..3737-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12955.2238.1 ID=mRNA_E-fasciculatus_F_contig12955.2238.1|Name=mRNA_E-fasciculatus_F_contig12955.2238.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=589bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12955:3149..3737- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGCTACAGGTGACCACGACACGCAACGTAACGAGCACGCCGTTCGTGGA TTGGTTCTGCGGAGGGCTCCAGTACCAGGTGGACCACCACCTCTTCCCAC AGATCCCGCGGCACAACCTCCGCAAGGTGAGAAAGAGAGAGAGAGATGCT GTGGATGTATTTGAGGTATTGTGCCAACACGCGCTGTTACAAGTTGTAGG GTAACGGTAGAGGTCGGAGACGAACATGTCACCTCACACGGACTGCTGTT GCTGTTATTTTTTTTGTTTTTGCCGATGCGGCGTACATACATGGTCCACC TACAATGTCGACGAAATTTCGGAGGGTTTGTCCCAGAGTCGGGGCAATGA CTTACCAGTATTTTTTCTCGTGCCCCCGCCATGTGTAACATCAGTNNNNN NNNNNCCCCCCCCCATGCATCCATCCTCTTTGCTAACCACCGCGTTAGGT GCACACCCTGGTAGAATCGTTCTGCAAGCAGCACGACGTGCACTACCACG AAGCGAGCATGTGGGAAGGAACGAAGGAGGTTCTGTCGCATCTGTCGGAC GTATCGGCAGAGTTCATCGCGGAATTCCCCGCCATGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12955:3149..3737-

>mRNA_E-fasciculatus_F_contig12955.2238.1 ID=mRNA_E-fasciculatus_F_contig12955.2238.1|Name=mRNA_E-fasciculatus_F_contig12955.2238.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=534bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12955:3149..3737- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGCTACAGGTGACCACGACACGCAACGTAACGAGCACGCCGTTCGTGGA
TTGGTTCTGCGGAGGGCTCCAGTACCAGGTGGACCACCACCTCTTCCCAC
AGATCCCGCGGCACAACCTCCGCAAGCGGCTACAGGTGACCACGACACGC
AACGTAACGAGCACGCCGTTCGTGGATTGGTTCTGCGGAGGGCTCCAGTA
CCAGGTGGACCACCACCTCTTCCCACAGATCCCGCGGCACAACCTCCGCA
AGGTGCACACCCTGGTAGAATCGTTCTGCAAGCAGCACGACGTGCACTAC
CACGAAGCGAGCATGTGGGAAGGAACGAAGGAGGTTCTGTCGCATCTGTC
GGACGTATCGGCAGAGTTCATCGCGGAATTCCCCGCCATGTAGGTGCACA
CCCTGGTAGAATCGTTCTGCAAGCAGCACGACGTGCACTACCACGAAGCG
AGCATGTGGGAAGGAACGAAGGAGGTTCTGTCGCATCTGTCGGACGTATC
GGCAGAGTTCATCGCGGAATTCCCCGCCATGTAG
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