mRNA_E-fasciculatus_F_contig12951.2237.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12951.2237.1
Unique NamemRNA_E-fasciculatus_F_contig12951.2237.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12951.2237.1 vs. uniprot
Match: D7FQH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQH8_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 1.090e-39
Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = 1
Query:    1 RCHVCMDSSSFKKRLVLSLGEHTYLYLATGTHRLSEGHCYIVPIRHTPASTACDEEVWREIELFKSSLRKM 213
            RC +CMDSSSFKKRLVLSLGEHTYLYLATGTHRLSEGHCYIVPIRHTPASTACDEEVWREIELFKSSLRKM
Sbjct:  849 RCPLCMDSSSFKKRLVLSLGEHTYLYLATGTHRLSEGHCYIVPIRHTPASTACDEEVWREIELFKSSLRKM 919          
BLAST of mRNA_E-fasciculatus_F_contig12951.2237.1 vs. uniprot
Match: A0A6H5L7J6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7J6_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 8.100e-39
Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = 1
Query:    1 RCHVCMDSSSFKKRLVLSLGEHTYLYLATGTHRLSEGHCYIVPIRHTPASTACDEEVWREIELFKSSLRKM 213
            RC +CMDSSSFKKRLVLSLGEHTYLYLATGTHRLS GHCYIVPIRHTPASTACDEEVWREIELFKSSLRKM
Sbjct:  457 RCPLCMDSSSFKKRLVLSLGEHTYLYLATGTHRLSGGHCYIVPIRHTPASTACDEEVWREIELFKSSLRKM 527          
BLAST of mRNA_E-fasciculatus_F_contig12951.2237.1 vs. uniprot
Match: A0A7S3Y866_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y866_HETAK)

HSP 1 Score: 89.7 bits (221), Expect = 1.040e-21
Identity = 41/72 (56.94%), Postives = 54/72 (75.00%), Query Frame = 1
Query:    1 RCHVCMDSSSFKKRLVLSLGEHTYLYLAT-GTHRLSEGHCYIVPIRHTPASTACDEEVWREIELFKSSLRKM 213
            RC +CMD+ +F +  +L+LGEH  L+LA  G   L++GHCY+ P+RH  ASTACDEEV RE+E FK +LRKM
Sbjct:   34 RCPLCMDAPAFARHRLLALGEHAALHLAPLGPRSLADGHCYLAPLRHVEASTACDEEVLRELEKFKVALRKM 105          
BLAST of mRNA_E-fasciculatus_F_contig12951.2237.1 vs. uniprot
Match: UPI0014259686 (CWF19-like protein 2 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014259686)

HSP 1 Score: 76.3 bits (186), Expect = 1.480e-14
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    1 RCHVCMDSSSFKKRLVLSLGEHTYLYLATGTHRLSEGHCYIVPIRHTPASTACDEEVWREIELFKSSLRKM 213
            +C  C+DSS  KK L++SLG   YL +   T  L++GHC ++P++HT A TA DE+VW E++ FK +L KM
Sbjct:  682 KCPFCIDSSEMKKHLIISLGTKVYLSVPA-TQSLTDGHCLLIPMQHTTAVTALDEDVWYEMQTFKRALVKM 751          
BLAST of mRNA_E-fasciculatus_F_contig12951.2237.1 vs. uniprot
Match: A0A7S0CHB4_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CHB4_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.190e-14
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    1 RCHVCMDSSSFKKRLVLSLGEHTYLYLATGTHRLSEGHCYIVPIRHTPASTACDEEVWREIELFKSSLRKM 213
            RC   ++SS FK+ ++LSLG    L LA     L++GHCYIVPI+HT +  +C+EEV+ E+  F+SSLR M
Sbjct:    7 RCWWWIESSMFKRHMLLSLGNQASLVLAPENVSLAKGHCYIVPIKHTESIVSCEEEVFSEVLRFQSSLRAM 77          
BLAST of mRNA_E-fasciculatus_F_contig12951.2237.1 vs. uniprot
Match: UPI00052055B6 (CWF19-like protein 2 n=1 Tax=Cariama cristata TaxID=54380 RepID=UPI00052055B6)

HSP 1 Score: 74.7 bits (182), Expect = 2.520e-14
Identity = 32/71 (45.07%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    1 RCHVCMDSSSFKKRLVLSLGEHTYLYLATGTHRLSEGHCYIVPIRHTPASTACDEEVWREIELFKSSLRKM 213
            +C  C DSS   K L++++G   YL L + T  L+EGHC I P++H  A+T  DE++W EI++F+S+L KM
Sbjct:  159 KCPYCFDSSELSKHLIIAIGTKVYLSLPS-TQSLTEGHCLIAPLQHHTAATLLDEDIWEEIQMFRSALVKM 228          
BLAST of mRNA_E-fasciculatus_F_contig12951.2237.1 vs. uniprot
Match: UPI001BB2C2A2 (CWF19-like protein 2 n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB2C2A2)

HSP 1 Score: 75.5 bits (184), Expect = 2.760e-14
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    1 RCHVCMDSSSFKKRLVLSLGEHTYLYLATGTHRLSEGHCYIVPIRHTPASTACDEEVWREIELFKSSLRKM 213
            +C  C++S   KK L+++LG   YL +   T  +SEG CYIVP++HT ASTA DE+VW EI++F+  L +M
Sbjct:  673 KCPFCLESEEMKKHLIVALGLKVYLCVPQ-TRCISEGQCYIVPMQHTVASTALDEDVWAEIQVFRKGLTRM 742          
BLAST of mRNA_E-fasciculatus_F_contig12951.2237.1 vs. uniprot
Match: UPI0018D85377 (CWF19-like protein 2 n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D85377)

HSP 1 Score: 74.3 bits (181), Expect = 7.030e-14
Identity = 32/71 (45.07%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    1 RCHVCMDSSSFKKRLVLSLGEHTYLYLATGTHRLSEGHCYIVPIRHTPASTACDEEVWREIELFKSSLRKM 213
            +C  C+DS   +K L+++LG   YL L      L+EGHC IVP++HT AST  DE+VW E+++++  L KM
Sbjct:  733 KCPFCLDSPEMQKHLIIALGIKVYLCLPAA-QSLTEGHCLIVPMQHTVASTVLDEDVWNEVQIYRKGLTKM 802          
BLAST of mRNA_E-fasciculatus_F_contig12951.2237.1 vs. uniprot
Match: A0A8B7Z042_ACAPL (CWF19-like protein 2 n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Z042_ACAPL)

HSP 1 Score: 74.3 bits (181), Expect = 7.040e-14
Identity = 32/70 (45.71%), Postives = 48/70 (68.57%), Query Frame = 1
Query:    4 CHVCMDSSSFKKRLVLSLGEHTYLYLATGTHRLSEGHCYIVPIRHTPASTACDEEVWREIELFKSSLRKM 213
            C  C+DS   +K L+++LG   YL L   +  L++GHC IVP++HT ASTA DE+VW E+++++  L KM
Sbjct:  737 CPFCLDSPEMQKHLIIALGIKVYLCLPA-SQSLTDGHCLIVPMQHTVASTALDEDVWNEVQIYRKGLTKM 805          
BLAST of mRNA_E-fasciculatus_F_contig12951.2237.1 vs. uniprot
Match: A0A7M7NLA5_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7NLA5_STRPU)

HSP 1 Score: 73.9 bits (180), Expect = 9.600e-14
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    1 RCHVCMDSSSFKKRLVLSLGEHTYLYLATGTHRLSEGHCYIVPIRHTPASTACDEEVWREIELFKSSLRKM 213
            +C  C++S   KK L+++LG   YL +   T  +SEG CYIVP++H  ASTA DE+VW EI++F+  L +M
Sbjct:  683 KCSFCLESEEMKKHLIVALGLKVYLCVPQ-TRCISEGQCYIVPMQHAVASTALDEDVWAEIQVFRKGLTRM 752          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12951.2237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQH8_ECTSI1.090e-3997.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7J6_9PHAE8.100e-3995.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3Y866_HETAK1.040e-2156.94Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI00142596861.480e-1447.89CWF19-like protein 2 n=1 Tax=Anneissia japonica Ta... [more]
A0A7S0CHB4_9STRA2.190e-1449.30Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
UPI00052055B62.520e-1445.07CWF19-like protein 2 n=1 Tax=Cariama cristata TaxI... [more]
UPI001BB2C2A22.760e-1447.89CWF19-like protein 2 n=1 Tax=Lytechinus variegatus... [more]
UPI0018D853777.030e-1445.07CWF19-like protein 2 n=1 Tax=Patiria miniata TaxID... [more]
A0A8B7Z042_ACAPL7.040e-1445.71CWF19-like protein 2 n=1 Tax=Acanthaster planci Ta... [more]
A0A7M7NLA5_STRPU9.600e-1446.48Uncharacterized protein n=1 Tax=Strongylocentrotus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12951contigE-fasciculatus_F_contig12951:557..1538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.0
Seed ortholog evalue7.7e-31
Seed eggNOG ortholog2880.D7FQH8
Preferred nameCWF19L2
GOsGO:0000375,GO:0000377,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0071014,GO:0071704,GO:0090304,GO:1901360,GO:1990904
EggNOG free text desc.Protein similar to CwfJ C-terminus 2
EggNOG OGsKOG2477@1,KOG2477@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size213
Cds size198
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12951.2237.1prot_E-fasciculatus_F_contig12951.2237.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12951 572..1538 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927799.7438543-UTR-E-fasciculatus_F_contig12951:556..5711622927799.7438543-UTR-E-fasciculatus_F_contig12951:556..571Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12951 557..571 +
1695995699.8181624-UTR-E-fasciculatus_F_contig12951:556..5711695995699.8181624-UTR-E-fasciculatus_F_contig12951:556..571Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12951 557..571 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927799.7665305-CDS-E-fasciculatus_F_contig12951:571..7091622927799.7665305-CDS-E-fasciculatus_F_contig12951:571..709Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12951 572..709 +
1695995699.8333209-CDS-E-fasciculatus_F_contig12951:571..7091695995699.8333209-CDS-E-fasciculatus_F_contig12951:571..709Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12951 572..709 +
1622927799.7814343-CDS-E-fasciculatus_F_contig12951:1478..15381622927799.7814343-CDS-E-fasciculatus_F_contig12951:1478..1538Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12951 1479..1538 +
1695995699.843686-CDS-E-fasciculatus_F_contig12951:1478..15381695995699.843686-CDS-E-fasciculatus_F_contig12951:1478..1538Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12951 1479..1538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12951.2237.1

>prot_E-fasciculatus_F_contig12951.2237.1 ID=prot_E-fasciculatus_F_contig12951.2237.1|Name=mRNA_E-fasciculatus_F_contig12951.2237.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=66bp
MDSSSFKKRLVLSLGEHTYLYLATGTHRLSEGHCYIVPIRHTPASTACDE
EVWREIELFKSSLRKM
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mRNA from alignment at E-fasciculatus_F_contig12951:557..1538+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12951.2237.1 ID=mRNA_E-fasciculatus_F_contig12951.2237.1|Name=mRNA_E-fasciculatus_F_contig12951.2237.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=982bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12951:557..1538+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGTGTCATGTGTGCATGGATTCATCGTCGTTCAAGAAGCGGCTGGTGCT GTCGCTCGGAGAGCACACGTACCTCTACCTGGCCACGGGCACCCATCGCC TCTCGGAAGGACACTGCTACATCGTGCCGATCCGCCACACGCCGGCATCA ACGGTAAGGGCGGAGCTATGGGAACTTCGCCCCGCAAGAAGTTCTTCTCG GGGATTCGTCTATTTTTCGTCACCAAACACCTGTGTGTTTCCCCCCCTCC CGAGTGACCCTGGATGGTTGTAGTTGTACGAACAAATATGCTGAAAAGTG CAGTACTGTTTATACACTGAAAGAGTGTAGTGCACGTATCGCCACGGCAA ATGGGGGGACTGTCGCCACACACACACACACACACACGAACACCGCTCGG TGGGTTAGTACTGCGCTCGCCTGGTCTGCGAGCACCCGGCATATTCTCCG CCAAACCACTCCGTGCCTTGAAGTTTCTGGGTGTAGCTTCTCTCTGGGGT CTTTGACCCGTTCGTCCCGTGTACTGAACCCCCTCTGTAACGTATCGGAT AAAACAGTAAACGAGGGCTCAACTGTTGACGGCGTTCCCTTGAGGAGATT TATCGCCGTTGAAACAGTAAAAGAGCGCTGAAATATTGAACCACGTCTCC TTTTGGTGTTGTGTCAACGGTGTGGTGTTCTTCTTTGTGGGTCCGAATGG CCAAAACAAACGCCCAACAATTCCAGCAATTCGCGTAGTCCTTACGGACA GCTGAGTAACCGGCAACTCTCGCGGTTTTTGTCGGTTTCTTGAGATGGTG TTTTTCGCAACCGAAATTATGACTCCTCGGCCCTGTATCGCGCCGACAGT AAGATTCCCCGGTCCCAGCCCCTCAGCCCCGCGAACACGTTTCTTTTGCC CTCATGATGGGGGAACCCTCAGGCATGCGACGAGGAGGTATGGCGAGAGA TCGAGCTCTTCAAGTCGTCTCTGCGGAAGATG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12951:557..1538+

>mRNA_E-fasciculatus_F_contig12951.2237.1 ID=mRNA_E-fasciculatus_F_contig12951.2237.1|Name=mRNA_E-fasciculatus_F_contig12951.2237.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=396bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12951:557..1538+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGATTCATCGTCGTTCAAGAAGCGGCTGGTGCTGTCGCTCGGAGAGCA
CACGTACCTCTACCTGGCCACGGGCACCCATCGCCTCTCGGAAGGACACT
GCTACATCGTGCCGATCCGCCACACGCCGGCATCAACGATGGATTCATCG
TCGTTCAAGAAGCGGCTGGTGCTGTCGCTCGGAGAGCACACGTACCTCTA
CCTGGCCACGGGCACCCATCGCCTCTCGGAAGGACACTGCTACATCGTGC
CGATCCGCCACACGCCGGCATCAACGGCATGCGACGAGGAGGTATGGCGA
GAGATCGAGCTCTTCAAGTCGTCTCTGCGGAAGATGGCATGCGACGAGGA
GGTATGGCGAGAGATCGAGCTCTTCAAGTCGTCTCTGCGGAAGATG
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