mRNA_E-fasciculatus_F_contig12950.2236.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12950.2236.1
Unique NamemRNA_E-fasciculatus_F_contig12950.2236.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12950.2236.1 vs. uniprot
Match: D8LMZ7_ECTSI (PX domain containing protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMZ7_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 1.060e-63
Identity = 101/102 (99.02%), Postives = 102/102 (100.00%), Query Frame = 1 
Query:    1 VHRRFRDFFALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDLSFVEERRKALEQYLKTLLQLPHVSTLDSTRAFLGMVGNLREFSVSWEGKELGAKLKR 306
            VHRRFRDF+ALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDLSFVEERRKALEQYLKTLLQLPHVSTLDSTRAFLGMVGNLREFSVSWEGKELGAKLKR
Sbjct:   84 VHRRFRDFYALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDLSFVEERRKALEQYLKTLLQLPHVSTLDSTRAFLGMVGNLREFSVSWEGKELGAKLKR 185
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BLAST of mRNA_E-fasciculatus_F_contig12950.2236.1 vs. uniprot
Match: A0A6H5JS20_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS20_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 6.300e-60
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 1 
Query:    1 VHRRFRDFFALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDLSFVEERRKALEQYLKTLLQLPHVSTLDSTRAFLGMVGNLREFSVSWEGKELGAKLKR 306
            VHRRFRDF ALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDLSFVEERRKALEQYLKTLLQLPHVSTLDSTRAFLGMVGNLREFSVSWEGKELGAKLKR
Sbjct:  157 VHRRFRDFHALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDLSFVEERRKALEQYLKTLLQLPHVSTLDSTRAFLGMVGNLREFSVSWEGKELGAKLKR 258
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BLAST of mRNA_E-fasciculatus_F_contig12950.2236.1 vs. uniprot
Match: A0A4D9CLT8_9STRA (PX domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CLT8_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.890e-22
Identity = 50/102 (49.02%), Postives = 65/102 (63.73%), Query Frame = 1 
Query:    1 VHRRFRDFFALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDLSFVEERRKALEQYLKTLLQLPHVSTLDSTRAFLGMVGNLREFSVSWEGKELGAKLKR 306
            VHRR+R+F  L EQV +  KGHHLRSSLP  PG++ KL  +H D +FVEERR  LE  L  LL +PHV  +   + FLG    L+E SV +  ++LG  + R
Sbjct:  149 VHRRYREFVCLFEQVHAAFKGHHLRSSLPELPGRQLKLLVDHNDTAFVEERRLLLETALGKLLSVPHVGAMVPVQVFLGFFDRLKEHSVIFTQRDLGLSITR 250
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BLAST of mRNA_E-fasciculatus_F_contig12950.2236.1 vs. uniprot
Match: A0A835YSM5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSM5_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 4.570e-21
Identity = 50/97 (51.55%), Postives = 64/97 (65.98%), Query Frame = 1 
Query:    1 VHRRFRDFFALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDLSFVEERRKALEQYLKTLLQLPHVSTLDSTRAFLGMVGNLREFSVSWEGKELG 291
            VHRR+ DF  L +Q + +MKGHHL  SLP  P K   L  +  D +F+E RR  L+ YL+TLL++PHV  LD+TRAFLG+VG+LRE S    G   G
Sbjct:  238 VHRRYTDFEMLHQQCDGMMKGHHLSDSLPPLPCKSPLL--DRSDAAFIESRRAELQAYLRTLLRVPHVGGLDTTRAFLGLVGDLRERSFVVSGGAAG 332
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BLAST of mRNA_E-fasciculatus_F_contig12950.2236.1 vs. uniprot
Match: A0A7S3M5K7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M5K7_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 4.940e-19
Identity = 42/100 (42.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:    1 VHRRFRDFFALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDLSFVEERRKALEQYLKTLLQLPHVSTLDSTRAFLGMVGNLREFSVSWEGKELGAKL 300
            VHRRFR+F  L  Q++  MKGHH+R  LP  P K  K +T+H D SF+++R   LE++L  +  +PHV  +   +AFLG++  +RE+S++++   LG  L
Sbjct:  160 VHRRFREFAELNSQIKQNMKGHHMRDVLPALPEKPLKQFTDHHDPSFIQDRCIKLERFLIAMTSIPHVGNMVCMKAFLGIMDQVREYSLAFQAPTLGLSL 259
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BLAST of mRNA_E-fasciculatus_F_contig12950.2236.1 vs. uniprot
Match: A0A6T9YST3_BIGNA (Hypothetical protein n=1 Tax=Bigelowiella natans TaxID=227086 RepID=A0A6T9YST3_BIGNA)

HSP 1 Score: 57.8 bits (138), Expect = 9.940e-8
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 1 
Query:    1 VHRRFRDFFALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDLSFVEERRKALEQYLKTLLQLPHV 204
            + +RF DF  L   V S   GH L S+LP  P K  KLWT+H + SFV++RR  L +YL  L  +  V
Sbjct:  149 LKKRFSDFEKLDHLVRSSFSGHQLMSNLPPKPSKSVKLWTDHLEKSFVQQRRGELNRYLTKLFNVKKV 216
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BLAST of mRNA_E-fasciculatus_F_contig12950.2236.1 vs. uniprot
Match: A0A7S0CUY1_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CUY1_9EUKA)

HSP 1 Score: 54.7 bits (130), Expect = 3.690e-7
Identity = 26/78 (33.33%), Postives = 47/78 (60.26%), Query Frame = 1 
Query:    7 RRFRDFFALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDLSFVEERRKALEQYLKTLLQLPHVSTLDSTRAFLGM 240
            +RF  F+    ++    K    +  LP+FP + SK++T+H D  F+E+RRK L++++K L ++P +S  +    FLG+
Sbjct:   67 KRFNAFYGFYRKLSKDFK----KCGLPKFPPRHSKVFTDHNDPVFIEQRRKKLDKFMKELFKIPGMSNQECVLDFLGI 140
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12950.2236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LMZ7_ECTSI1.060e-6399.02PX domain containing protein (Partial) (Fragment) ... [more]
A0A6H5JS20_9PHAE6.300e-6099.02PX domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A4D9CLT8_9STRA2.890e-2249.02PX domain-containing protein n=3 Tax=Monodopsidace... [more]
A0A835YSM5_9STRA4.570e-2151.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3M5K7_9STRA4.940e-1942.00Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A6T9YST3_BIGNA9.940e-844.12Hypothetical protein n=1 Tax=Bigelowiella natans T... [more]
A0A7S0CUY1_9EUKA3.690e-733.33Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12950contigE-fasciculatus_F_contig12950:233..1995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue1.3e-16
Seed eggNOG ortholog44056.XP_009038266.1
KEGG koko:K06236,ko:K19069
KEGG Pathwayko04151,ko04510,ko04512,ko04611,ko04926,ko04933,ko04974,ko05146,ko05165,map04151,map04510,map04512,map04611,map04926,map04933,map04974,map05146,map05165
EggNOG free text desc.regulation of pentose-phosphate shunt
EggNOG OGsCOG0588@1,KOG0235@2759
EC1.1.99.18
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko01000,ko04516
Hectar predicted targeting categoryother localisation
Exons3
Model size306
Cds size306
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12950.2236.1prot_E-fasciculatus_F_contig12950.2236.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12950 233..1995 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927799.6583633-CDS-E-fasciculatus_F_contig12950:232..3461622927799.6583633-CDS-E-fasciculatus_F_contig12950:232..346Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12950 233..346 -
1695995699.7787685-CDS-E-fasciculatus_F_contig12950:232..3461695995699.7787685-CDS-E-fasciculatus_F_contig12950:232..346Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12950 233..346 -
1622927799.6791818-CDS-E-fasciculatus_F_contig12950:1014..11641622927799.6791818-CDS-E-fasciculatus_F_contig12950:1014..1164Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12950 1015..1164 -
1695995699.7952633-CDS-E-fasciculatus_F_contig12950:1014..11641695995699.7952633-CDS-E-fasciculatus_F_contig12950:1014..1164Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12950 1015..1164 -
1622927799.6966617-CDS-E-fasciculatus_F_contig12950:1953..19951622927799.6966617-CDS-E-fasciculatus_F_contig12950:1953..1995Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12950 1954..1995 -
1695995699.8059678-CDS-E-fasciculatus_F_contig12950:1953..19951695995699.8059678-CDS-E-fasciculatus_F_contig12950:1953..1995Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12950 1954..1995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12950.2236.1

>prot_E-fasciculatus_F_contig12950.2236.1 ID=prot_E-fasciculatus_F_contig12950.2236.1|Name=mRNA_E-fasciculatus_F_contig12950.2236.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=102bp
VHRRFRDFFALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDLSFVEE
RRKALEQYLKTLLQLPHVSTLDSTRAFLGMVGNLREFSVSWEGKELGAKL
KR
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mRNA from alignment at E-fasciculatus_F_contig12950:233..1995-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12950.2236.1 ID=mRNA_E-fasciculatus_F_contig12950.2236.1|Name=mRNA_E-fasciculatus_F_contig12950.2236.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1763bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12950:233..1995- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTCACCGGAGGTTTCGAGATTTTTTCGCGCTTCAGGAGCAGGTGAGGGC
AAAGCATGCGGCGTAATAGGCTTATTTTTTTTTTCCGGGGGGGGGGTTCG
GGGACGAACAACGCTGCTCGGTGTATACTTTTTTCTTCGCTTAGAGAGAG
AGGTGGGCTCCGCGTATGTGTGCACCTGTCCGCTATCTTCGTTGCTGTAC
TCTGTTTCGAGGGGGGTACAGTGCCAATGCCTGGGGCTGTGTTCTCGTGC
TCGAGGACGCGGCTTATCACCAGCACACCCTTTGTTTGCTGTCTCAGGGA
GGCTTGCGTTCGAACAGCCTTGCCACCAACCGTCTTTGCTGTGTGTATGT
GTGTTGGGGAGAAGGGTAGGACCTAGGAGAAACACGGCGCGAAGCTCTTG
AGAGGACGACCATCACATGGACGAGAGGACGACATGGTTCTGTGTCTCTG
AGTGTCTCTGAGTGGCATCCCCATAGGGCAGGACAGTCCTTTACTATCCC
GTTGGTATCTGGGCTGACTCTACACACATACAGTAGCGTCGGGACATGGT
TTTTTACCATTCATTGTAAAGACTTCAACACATCCCCTTCGAACGGGTAG
TCTTTCGGTGTTTGTACTTGTATTTTTTCTTTAAAAACTCTCTTAGACCC
ATTTTCTCTTGTAAGCCGCAGTATGGAATACTCCGAAGTATTATATGTAT
TTCAAATGGTCGGGATAAGTAATCTCTGCTCTCATTGATCCGCACTTTTC
ACGTGAATAACCTCTCTTGAGCCGTCGCTATTTCTGCGGCAACCTTGCCG
CGCGTGATCGATCGGGTGTGCCGTGCCTCAGGTGGAGTCTCTCATGAAGG
GTCACCACCTGCGGTCCTCCTTGCCCAGGTTCCCGGGCAAGAAGTCCAAG
CTCTGGACAAACCACGGCGACTTGTCCTTCGTCGAGGAACGAAGAAAGGC
CTTGGAGCAGTACCTCAAGACTCTGCTACAGGTGAAGAAACGCCAGGGGA
GGGGGGTTGTACCCACATGTAAACGCATGCCGCAGGCGTTAGACCATCCT
CGCATCCCTACAATGCCGGGACGGAGCGATGTGCCGAGTTTGTCGCCGAC
CCAGGCTAGGTGTCACAAGGATGAACCAGAAGCTGGTCATGGTCATCATC
CTTGCGCCAGCGGGGGGGGTGCTTGATATGTTGGCAAGCAAGTGGGGGCG
TGGTGAGGCTGCAGCATTTTCTTCGCGTCTCCCCGTGAGGCGGGGTGGTA
CGATTGGTGCCTGTGTTGTCATGTTTGTATGGGCAGCGTGCCCTCCCGCT
GCGCCCTGTAGCTGTAGCTGTAGCTGTAGCTGTAGCCTGTGCGGTCTTGG
TGTCGTTGCCGTGCTTTTTACTCTTGGTCCCGCGAGCTCCGTCGCTGGCT
GCGTTCGCGAGGTGTGCGATGAAAACCCCGTCCGTCTCGCTTTTCTTTTC
AATCTCAGCATGTGAACACAACCTACGTTTCCACTCACTAGTAGGTGTCT
TTCGTTCCCTTCACCACCGCAAGCAAGTGCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCNNNNNNNNNNGCCCCCGCCCCCCCCTCCGCC
ATCTCACGGAACTCCTTGTTATGTCAAACGTCCTCCTTCGAAACGCCAGC
TTCCTCACGTGAGCACGCTAGACTCGACGCGCGCGTTCCTCGGTATGGTC
GGAAACCTGCGAGAGTTTTCGGTGTCGTGGGAGGGCAAGGAGCTCGGCGC
CAAGCTTAAGCGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12950:233..1995-

>mRNA_E-fasciculatus_F_contig12950.2236.1 ID=mRNA_E-fasciculatus_F_contig12950.2236.1|Name=mRNA_E-fasciculatus_F_contig12950.2236.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=612bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12950:233..1995- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTCACCGGAGGTTTCGAGATTTTTTCGCGCTTCAGGAGCAGGTTCACCG
GAGGTTTCGAGATTTTTTCGCGCTTCAGGAGCAGGTGGAGTCTCTCATGA
AGGGTCACCACCTGCGGTCCTCCTTGCCCAGGTTCCCGGGCAAGAAGTCC
AAGCTCTGGACAAACCACGGCGACTTGTCCTTCGTCGAGGAACGAAGAAA
GGCCTTGGAGCAGTACCTCAAGACTCTGCTACAGGTGGAGTCTCTCATGA
AGGGTCACCACCTGCGGTCCTCCTTGCCCAGGTTCCCGGGCAAGAAGTCC
AAGCTCTGGACAAACCACGGCGACTTGTCCTTCGTCGAGGAACGAAGAAA
GGCCTTGGAGCAGTACCTCAAGACTCTGCTACAGCTTCCTCACGTGAGCA
CGCTAGACTCGACGCGCGCGTTCCTCGGTATGGTCGGAAACCTGCGAGAG
TTTTCGGTGTCGTGGGAGGGCAAGGAGCTCGGCGCCAAGCTTAAGCGACT
TCCTCACGTGAGCACGCTAGACTCGACGCGCGCGTTCCTCGGTATGGTCG
GAAACCTGCGAGAGTTTTCGGTGTCGTGGGAGGGCAAGGAGCTCGGCGCC
AAGCTTAAGCGA
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