mRNA_E-fasciculatus_F_contig1295.2234.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1295.2234.1
Unique NamemRNA_E-fasciculatus_F_contig1295.2234.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1295.2234.1 vs. uniprot
Match: A0A6H5JAX8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAX8_9PHAE)

HSP 1 Score: 435 bits (1119), Expect = 4.380e-146
Identity = 246/299 (82.27%), Postives = 255/299 (85.28%), Query Frame = 3
Query:  594 QMYFFGWGFYALGHDDTLERRLTGQPARTQTSSTKASXXXXXXXXXXXXRQGHGGIGRISAAESVAIDIEPCTGEESNSEETTNAGDTGGSGDESEGDRWAGFKERVSRVLVSPNIISVTIGVVIAMIAPLQEMLFDNPRSVLRPLGAALQTVGTPEVAVSTLVMAGSLAQVPTVATSSXXXXXXXXXXXXXXXXXXXRFRIIAGFLHVVCRLIVVPAIGFTVFWVARTQSSVMGENRLMHLLLLIEFAMPSAAFVIVSLNQLRMPATAGFMARLYLWQYGASMLTITAWTALAVHLVY 1490
            QMYFFGWGFYALGHDDTLER LTGQ  RT+T STK  XXXXX       RQ HGG+GRI+AAE+V IDIEPCTGEES+SE TTNAG T   GD SEG  WAGFKERVSRVLVSPNIISVTIGVVIAMIAPLQEMLFDN RS+LRPLGAALQTVGTPEVAVSTLVMAGSLAQVPTVA +S                   RFRIIAGFLHVVCRLIVVPAIGFT+FWVARTQSSVMGENRLMHL+LLIEFAMPSAAFVIVSLNQLRMPATAGFMARLYLWQYGASMLTITAWTALAVHLVY
Sbjct:  166 QMYFFGWGFYALGHDDTLERSLTGQQTRTRTPSTKXXXXXXXTSSTSSARQEHGGVGRINAAEAVVIDIEPCTGEESSSEGTTNAGGTEDGGDVSEGGPWAGFKERVSRVLVSPNIISVTIGVVIAMIAPLQEMLFDNSRSILRPLGAALQTVGTPEVAVSTLVMAGSLAQVPTVAAASTQGGQGDDDGTLRRKR---RFRIIAGFLHVVCRLIVVPAIGFTLFWVARTQSSVMGENRLMHLILLIEFAMPSAAFVIVSLNQLRMPATAGFMARLYLWQYGASMLTITAWTALAVHLVY 461          
BLAST of mRNA_E-fasciculatus_F_contig1295.2234.1 vs. uniprot
Match: D7FW26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW26_ECTSI)

HSP 1 Score: 320 bits (820), Expect = 6.100e-101
Identity = 183/306 (59.80%), Postives = 214/306 (69.93%), Query Frame = 3
Query:  594 QMYFFGWGFYALGHDDTLERRLTGQPARTQTSSTK-----ASXXXXXXXXXXXXRQGHGGIGRISAAESVAIDIEPCTGEE--SNSEETTNAGDTGGSGDESEGDRWAGFKERVSRVLVSPNIISVTIGVVIAMIAPLQEMLFDNPRSVLRPLGAALQTVGTPEVAVSTLVMAGSLAQVPTVATSSXXXXXXXXXXXXXXXXXXXRFRIIAGFLHVVCRLIVVPAIGFTVFWVARTQSSVMGENRLMHLLLLIEFAMPSAAFVIVSLNQLRMPATAGFMARLYLWQYGASMLTITAWTALAVHLVY 1490
            Q++F+ WGFYALG DD LER+L G+ A++ + +T      +S            RQ  GG GR S     A+ +      E  S +  T  A   G  GD+     WAG + R+ R++VSPN+I+V IGV IAMI  LQE LFDNPR+VLRPLGAA++T+G+P VAVSTLVMAGSL QVPTV  +S                   RFRI+ GFLHVVCRLIVVPA+GFT+FWVAR QSSVMGENRLMHL+LLIE AMPSAAFVIVSLNQLRMPATAGFMARLYLWQYGASM+TITAWTALAVHLVY
Sbjct:  166 QVWFYSWGFYALGQDDELERKLAGEAAKSPSEATTDDVEISSPCEIAQGDALPPRQAEGGSGRQSPTHDGAVVVGASRRNEGVSGTSGTAAASHAGKDGDDEGCCSWAGLRRRLWRLVVSPNMIAVAIGVTIAMIPALQEQLFDNPRAVLRPLGAAVETIGSPTVAVSTLVMAGSLVQVPTVGAASAAASQGGQGDDDGTLRRWRRFRILVGFLHVVCRLIVVPAVGFTLFWVARNQSSVMGENRLMHLILLIELAMPSAAFVIVSLNQLRMPATAGFMARLYLWQYGASMVTITAWTALAVHLVY 471          
BLAST of mRNA_E-fasciculatus_F_contig1295.2234.1 vs. uniprot
Match: A0A6H5J918_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J918_9PHAE)

HSP 1 Score: 236 bits (601), Expect = 1.890e-66
Identity = 184/502 (36.65%), Postives = 217/502 (43.23%), Query Frame = 3
Query:  543 SHLLRTTGCAVRRCA-CRQMYFFGWGFYALGHDDTLERRLTGQPARTQTSSTK-----ASXXXXXXXXXXXXRQGHGGIGRISAAESVAIDIEPCTGEE--SNSEETTNAGDTGGSGDESEGDRWAGFKERVSRVLVSPNIISVTIGVVIAMIAPLQEMLFDNPRSVLRPLGAALQ----------------TVGTPEVAVSTLVMAGSLAQVPTVATSSXXXXXXXXXXXXXXXXXXXRFRIIAGFLHVVCRLIV------------------------------------------------------------------------------------------------------------------------------------------------------------------VPAIGFTVFWVARTQSSVMGENRLMHLLLLIEFAMPSAAFVIVSLNQLRMPATAGFMARLYLWQYGASMLTITAWTALAVHLVY 1490
            SH LR  G +        Q++F+ WGFYALG DD LER+L G+ A+  + +T      +S             Q  GG G  S     A+ +      E  S +  T  A   G  GD++    WAG + R+ R+ VSPN+I+V IGV+IAM+  LQE+LFD+PR+VLRP GAA++                T+G+P VAVSTLVMAGSL QVPTV   S                   RFRI+ GFLHVVCRLIV                                                                                                                                                                  VPA+GFT+FWVAR QSSVMGENRLMHL+LLIE AMPSAAFVIVSLNQLRMPATAGFMARLYLWQYGASMLTITAWTALAVHLVY
Sbjct:  176 SHTLRRQGFSFHGYGQILQVWFYSWGFYALGQDDELERKLAGEEAKIPSEATTDDVEISSPCEIAQGDALPPLQADGGSGMQSPIHDGAVIVGASRRNEGVSGTGGTAVASHAGEDGDDAGCFSWAGLRRRLWRLAVSPNMIAVAIGVIIAMLPALQELLFDSPRAVLRPFGAAIEVGHCSLAATPVAIEQGTIGSPTVAVSTLVMAGSLVQVPTVGAGSAAATQGVQCDDDGTLRRWRRFRIVVGFLHVVCRLIVGEHADPRAARFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFKCDCGFECEDRVHVVAECPLYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVVGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVPAVGFTLFWVARNQSSVMGENRLMHLILLIELAMPSAAFVIVSLNQLRMPATAGFMARLYLWQYGASMLTITAWTALAVHLVY 677          
BLAST of mRNA_E-fasciculatus_F_contig1295.2234.1 vs. uniprot
Match: A0A6H5J8G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8G0_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 3.670e-50
Identity = 109/211 (51.66%), Postives = 142/211 (67.30%), Query Frame = 3
Query:  858 GGSGDESEGDRWAGFKERVSRVLVSPNIISVTIGVVIAMIAPLQEMLFDNPRSVLRPLGAALQTVGTPEVAVSTLVMAGSLAQVPTVATSSXXXXXXXXXXXXXXXXXXXRFRIIAGFLHVVCRLIVVPAIGFTVFWVARTQSSVMGENRLMHLLLLIEFAMPSAAFVIVSLNQLRMPATAGFMARLYLWQYGASMLTITAWTALAVHLVY 1490
            GG G +SEG  W   K R   +LVSP I++V  G+VI  I PLQ+MLF NP+++LRPLG A+Q VG P V VS+LVMAGSL  V  VA  +                   R R + GFL V  RL+ +PA  F +FWVA+T SSVMGENRLMHL+LL+EFAMP+A  +I  L+Q+R+P TAGF++RL +WQY AS +T++ WTALA+ ++Y
Sbjct:  417 GGRGSDSEGP-WEEAKHRAWALLVSPVIVAVVAGIVICTIEPLQDMLFHNPQALLRPLGGAIQAVGVPTVTVSSLVMAGSLVAVSAVADEAAPPAGGNEVAVPIWR----RPRFVTGFLLVFLRLVAIPAAFFGIFWVAKTYSSVMGENRLMHLILLVEFAMPTATIMIPLLHQIRLPRTAGFISRLLVWQYAASSITVSFWTALAITMLY 622          
BLAST of mRNA_E-fasciculatus_F_contig1295.2234.1 vs. uniprot
Match: D7FW24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW24_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 1.500e-41
Identity = 87/166 (52.41%), Postives = 112/166 (67.47%), Query Frame = 3
Query:  993 MLFDNPRSVLRPLGAALQTVGTPEVAVSTLVMAGSLAQVPTVATSSXXXXXXXXXXXXXXXXXXXRFRIIAGFLHVVCRLIVVPAIGFTVFWVARTQSSVMGENRLMHLLLLIEFAMPSAAFVIVSLNQLRMPATAGFMARLYLWQYGASMLTITAWTALAVHLVY 1490
            MLF NP+++LRPLG A+Q VG P V VS+LVMAGSL  V  VA  +                   R R + GFL V  RLI +PA  F VFW A+T SSVMGENRLMHL+LL+EFAMP+A  +I  L+Q+R+P TAGF++RL +WQY AS +T++ WTA A+ ++Y
Sbjct:    1 MLFHNPQALLRPLGGAIQAVGVPTVTVSSLVMAGSLVAVSAVANGAAPSAGGHEAAVPIWR----RPRFVMGFLLVFLRLIAIPAAFFGVFWGAKTYSSVMGENRLMHLILLVEFAMPTATIMIPLLHQIRLPRTAGFISRLLVWQYAASSITVSFWTAFAITMLY 162          
BLAST of mRNA_E-fasciculatus_F_contig1295.2234.1 vs. uniprot
Match: A0A836C7K1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7K1_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.480e-15
Identity = 74/231 (32.03%), Postives = 110/231 (47.62%), Query Frame = 3
Query:  909 RVSRVLVSPNIISVTIGVVIAMIAPLQEMLFDNPRSVLRPLGAALQTVGTPEVAVSTLVMAGSLAQ--------VPTVATSSXXXXXXXXXXXXXXXXXXXRFRIIAGFLHVVCRLIVVPAIGFTVFWVARTQSSVMGE-NRLMHLLLLIEFAM----------------------------PSAAFVIVSLNQLRMPATAGFMARLYLWQYGASMLTITAWTALAVHLVY 1490
            ++ R   +P  I+V +GV+I +I PL   LF N RS LRP+GAA+ TVG P VA++TL+MA SLAQ         PTV  +                    R   I   + V C L+VVP +GF +F      + ++     LM LL++ +                               PS   VI+SL+Q+ +PA A  +AR+Y++QY  S++T+T   AL +  +Y
Sbjct:  397 QLKRAASTPPNIAVALGVIIGLIPPLANGLFHNSRSPLRPIGAAMVTVGQPYVAIATLLMASSLAQSRKNAALPTPTVVGTEVMDAAQLHNAQQEQA----RREKITMLVLVFCPLVVVPMLGFGIFAFLDNYTPILNSATPLMKLLIIFQVTTTSMLRLMVEIXXXXXXXXXXXXXXXXXXPSGLSVIISLSQMHLPAMASSLARMYMYQYLLSIITLTVLAALTMAYIY 623          
BLAST of mRNA_E-fasciculatus_F_contig1295.2234.1 vs. uniprot
Match: A0A7S4E2T5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E2T5_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.370e-12
Identity = 62/193 (32.12%), Postives = 99/193 (51.30%), Query Frame = 3
Query:  918 RVLVSPNIISVTIGVVIAMIAPLQEMLF--DNPRSVLRPLGAALQTVGTPEVAVSTLVMAGSLAQVPTVATSSXXXXXXXXXXXXXXXXXXXRFRIIAGFLHVVCRLIVVPAIGFTVFWVARTQSSVMGENRLMHLLLLIEFAMPSAAFVIVSLNQLRMPATAGFMARLYLWQYGASMLTITAWTALAVHLVY 1490
            R+ + PN+I +  GV+I    PL+ +LF  D P   LRP+G AL+T+G P VAV+ ++MA +LA        +                   R  +      ++ RL++VP I + +F V           R+  L++L+E AMP A  V+V+LN +     A  +A  Y  QY  +++T+TA+T  A+H+VY
Sbjct:  199 RLFLQPNMIGMYAGVIIGA-TPLRRLLFRGDTP---LRPIGLALETLGAPVVAVTVMIMAAALANGHARRRRTKREFSSVVENNSHASKEDTR-DVATAVWFILARLVIVPVIAYPIFSVINLPG-----GRMTTLIILLELAMPGAQTVLVTLNAVGSGHVAEEIAPWYFLQYATAIVTLTAFTVWALHIVY 381          
BLAST of mRNA_E-fasciculatus_F_contig1295.2234.1 vs. uniprot
Match: A0A835Z6D5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6D5_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.680e-11
Identity = 85/274 (31.02%), Postives = 124/274 (45.26%), Query Frame = 3
Query:  891 WAGFKERVSRVLVSPNIISVTIGVVIAMIAPLQEMLFDNPRSVLRPLGAALQTVGTPEVAVSTLVMAG------------------------------------------SLAQVP--------------------------TVATSSXXXXXXXXXXXXXXXXXXX-----RFRIIAGFLHVVCRLIVVPAIGFTVFWVARTQSSVM-GENRLMHLLLLIEFAMPSAAFVIVSLNQLRMPATAGFMARLYLWQYGASMLTITAWTALAVHLVY 1490
            W G    V R +VSP  ++V +GV I ++  L+E +F +  S LRP+GAA+ T+G P +A+ TL+MA                                           S  Q P                          ++A S         XXXXXXXXXX      R  ++   + V+  L+VVPA+GF  F +    ++ + G   L+ LL+L++  MP A  VIV L+ L +P  A  +ARLYL+QY AS+ T+TA  A+A+  VY
Sbjct:  281 WLGGAGGVWRAVVSPPNVAVLLGVTIGVVPALREGMFHDATSPLRPIGAAIVTIGQPTIALQTLLMAARSSSTSPSSDHGTCISTCDRAARSSSSGAAPLSLHSCWVRRESCHQAPYWRRMTFKCTHSHCAPSLPPHSPPPRSLAHSHGRLQLAAAXXXXXXXXXXAQRSLRRSEVLTAAVFVLVPLVVVPAVGFAAFVLLHDNTAFLRGAPPLLQLLILLQLGMPGAQAVIVGLSHLALPRMAAALARLYLYQYVASIATLTALAAVAMMYVY 554          
BLAST of mRNA_E-fasciculatus_F_contig1295.2234.1 vs. uniprot
Match: A0A8J2SPR5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SPR5_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.410e-5
Identity = 62/203 (30.54%), Postives = 102/203 (50.25%), Query Frame = 3
Query:  906 ERVSRVLVSPNIISVTIGVVIAMIAPLQEMLFD-NPRSVLRPLGAALQTVGTPEVAVSTLVMAGSLAQVPTVATSSXXXXXXXXXXXXXXXXXXXRFR-------IIAGFLHVVCRLIVVPAIGFTVFWVARTQSSVMGENRLMHLLLLIEFAMPSAAFVIVSLNQLRMPATAGFMARLYLWQYGASMLTITAWTALAVHLVY 1490
            E V   +  P   ++ +G  I +IAPL+  LF    RS LR +G  ++ + +P V V+ L++  SLA V   A ++                    +        II+GF  VV RL+VVPAI   +  +A T +  + + RL   +LLI   MP+A  +IV L++  +   A  ++ L+++QY AS+ T+TA  +  ++ VY
Sbjct:  196 EAVGSCVREPINAALAVGTAIGLIAPLRRGLFSVGGRSPLRIIGGTVELLASPTVCVAVLLVGASLANVDLNALAAPDKSARDAEAPPPPPAKRSVWGAVYAVRGIISGF--VVVRLLVVPAIVGALEALA-TATIPIPQARLGRAVLLISSGMPTAQIMIVLLHKFGLSQQASELSFLFVFQYAASIPTMTALISSVLNRVY 395          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1295.2234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JAX8_9PHAE4.380e-14682.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FW26_ECTSI6.100e-10159.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J918_9PHAE1.890e-6636.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8G0_9PHAE3.670e-5051.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FW24_ECTSI1.500e-4152.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C7K1_9STRA1.480e-1532.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4E2T5_9STRA1.370e-1232.12Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A835Z6D5_9STRA2.680e-1131.02Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J2SPR5_9STRA1.410e-530.54Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1295contigE-fasciculatus_F_contig1295:3774..6915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score444.9
Seed ortholog evalue3e-122
Seed eggNOG ortholog2880.D7FW25
EggNOG OGs2E8NN@1,2SF47@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAuxin efflux carrier
Ec32 orthologEc-01_003110.3
Exons6
Model size1221
Cds size897
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1295.2234.1prot_E-fasciculatus_F_contig1295.2234.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1295 4970..6915 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927799.3118455-UTR-E-fasciculatus_F_contig1295:3773..40211622927799.3118455-UTR-E-fasciculatus_F_contig1295:3773..4021Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1295 3774..4021 +
1695995699.6142707-UTR-E-fasciculatus_F_contig1295:3773..40211695995699.6142707-UTR-E-fasciculatus_F_contig1295:3773..4021Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1295 3774..4021 +
1622927799.3273294-UTR-E-fasciculatus_F_contig1295:4621..46971622927799.3273294-UTR-E-fasciculatus_F_contig1295:4621..4697Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1295 4622..4697 +
1695995699.6254647-UTR-E-fasciculatus_F_contig1295:4621..46971695995699.6254647-UTR-E-fasciculatus_F_contig1295:4621..4697Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1295 4622..4697 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927799.3430874-CDS-E-fasciculatus_F_contig1295:4969..54191622927799.3430874-CDS-E-fasciculatus_F_contig1295:4969..5419Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1295 4970..5419 +
1695995699.6358612-CDS-E-fasciculatus_F_contig1295:4969..54191695995699.6358612-CDS-E-fasciculatus_F_contig1295:4969..5419Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1295 4970..5419 +
1622927799.3788664-CDS-E-fasciculatus_F_contig1295:5652..58441622927799.3788664-CDS-E-fasciculatus_F_contig1295:5652..5844Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1295 5653..5844 +
1695995699.6457667-CDS-E-fasciculatus_F_contig1295:5652..58441695995699.6457667-CDS-E-fasciculatus_F_contig1295:5652..5844Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1295 5653..5844 +
1622927799.3952813-CDS-E-fasciculatus_F_contig1295:6254..63711622927799.3952813-CDS-E-fasciculatus_F_contig1295:6254..6371Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1295 6255..6371 +
1695995699.6557117-CDS-E-fasciculatus_F_contig1295:6254..63711695995699.6557117-CDS-E-fasciculatus_F_contig1295:6254..6371Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1295 6255..6371 +
1622927799.421082-CDS-E-fasciculatus_F_contig1295:6777..69151622927799.421082-CDS-E-fasciculatus_F_contig1295:6777..6915Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1295 6778..6915 +
1695995699.664716-CDS-E-fasciculatus_F_contig1295:6777..69151695995699.664716-CDS-E-fasciculatus_F_contig1295:6777..6915Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1295 6778..6915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1295.2234.1

>prot_E-fasciculatus_F_contig1295.2234.1 ID=prot_E-fasciculatus_F_contig1295.2234.1|Name=mRNA_E-fasciculatus_F_contig1295.2234.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=299bp
MYFFGWGFYALGHDDTLERRLTGQPARTQTSSTKASAAARATSSTSSARQ
GHGGIGRISAAESVAIDIEPCTGEESNSEETTNAGDTGGSGDESEGDRWA
GFKERVSRVLVSPNIISVTIGVVIAMIAPLQEMLFDNPRSVLRPLGAALQ
TVGTPEVAVSTLVMAGSLAQVPTVATSSAAATQGGQGDDDGAVRRRRRFR
IIAGFLHVVCRLIVVPAIGFTVFWVARTQSSVMGENRLMHLLLLIEFAMP
SAAFVIVSLNQLRMPATAGFMARLYLWQYGASMLTITAWTALAVHLVY*
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mRNA from alignment at E-fasciculatus_F_contig1295:3774..6915+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1295.2234.1 ID=mRNA_E-fasciculatus_F_contig1295.2234.1|Name=mRNA_E-fasciculatus_F_contig1295.2234.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3142bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1295:3774..6915+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATCTCCAGCTTGGGAGCTACCTTAAATCCGGAAGCACTGAAAAACTC GTGGCAGTTGGTGGTAGCCGGGAGCTTTACGGTTGCTCTTTCGGGAACCG TTGCGTGGGTGGTCGGGCGAGTTTTCTTCCGGAGGCCTGAAGATCGCCGC GCCTTTCGTCCCGCTGGGCTGGCAATCACGTTCGCGAACTCAGCGGGGTT TCCGCTCCTGCTGATGAACGCTTTGTGCGAGCAAGACTACGTCAGAAGGT GACTTGGTTACTTGGAAGGGGGGATGTTACTTATTCCTTCACAAGTTGCA AACCGTTGGGACCTCTACTACCAAGTACTTCCCGACAGCCGGAGAAAATT CCCCCGATCTCGAAGGCTCGAAAAGCAACGCAGGACAATACCGTAACATT TCTTTTATCCCGGAAGCCGAGCAATACACGAAATGTGCTTACATGGAGCA AATACTTTACTACCAATGACGTGACCCTGAAGAAGCTCCAAACTTGACGT TCGATTCCCAACAGATGCTCGTACACGCTTGTGGTACTACACTCTCTGCA AAGCCTACCCACTCACGTGGTATTGCTCTCTGCGCCCAACACGTTTGAGG CGGTGAGTACTATTAGTCTACAATAGTGCACTCATAAACGTCATTTCTGT GCACACTGCTAGGTCAACCAAGGCAACCACATCGTGGCAAAAGTAGTTTC AGAATCGCTCTTCATCGCACTCTGTCGTGTAGGACATCAAATACCGGGAA CCACGAAGGGTGCCACATATAGCAATGACGTACACGAGCCCCACGCACCA GGACCACCGCCACCACTGCACCCCCTCCCCCCCGTAACGGAACGACAGTG ATTACAATGACGACGCGGTGGAGTGCTTCACGCAGGCAACGGGCATGATC TTCATCTAGGTGGTCGTCTGGCAGGTGAACAGTGGGGCAGGGTCGGACGG ACGTTAAACGAGTGCTAAGCAAGCGTAATCGCACCAACGATTGTTGCTGC TGCACTCGTCAAGCTGCTGATGAGAAAATGACAATGCCGGGTGCAGAAGA GATGTGGCAGACAAACCAAACTGTGTTGATATTGGCGCACAGTGTTGGCG GTACTTCGAGGACGAGAAGACTCCCTACCCCAAAACAAACCATCGCATCT GTTGCGAACAACTGGCTGTGCCGTTCGGCGGTGTGCATGTCGTCAGATGT ACTTTTTCGGGTGGGGATTCTACGCCCTTGGGCACGACGACACGTTGGAG CGTAGGCTCACCGGACAGCCGGCCAGGACACAAACTTCGTCAACCAAGGC AAGTGCTGCAGCAAGAGCTACGTCCTCGACGTCATCGGCGCGTCAAGGGC ACGGCGGAATCGGTCGCATCAGCGCGGCGGAATCAGTGGCCATCGACATC GAGCCGTGCACGGGAGAAGAAAGCAACAGCGAGGAAACGACGAATGCCGG TGACACGGGGGGTAGTGGCGACGAAAGCGAGGGGGATCGGTGGGCGGGGT TCAAGGAGCGGGTCTCGCGTGTTTTGGTGTCGCCAAATATCATCTCGGTC ACGATCGGTGTGGTTATCGCTATGATTGCCCCGCTGCAAGAAATGCTTTT CGACAACCCGCGGTCGGTACTGCGGCCGCTGGGGGCGGCTCTTCAGGTGA GCTATTGGAATGACGCCTCTGAAGTAGCCCTAAAAGTGGGCTACCCGAAG CATTGGATTTTTTCCGGTCGAGCGTTTCGAGCTGGTTCGTTTCTGCTATT TCTAGTCCGTGCTTTGCCTCCAACCCCCTCCAGCAATACAGTGATAAATG GTACACCCCCGCCTTTCCTCTAGAGTCTGTGTCTGAGAAGTATTCCCCGT CGGGCATCGCGTGTTTTGGTCGCGACCAGACGGTGGGAACACCCGAGGTG GCGGTGTCGACGCTGGTGATGGCCGGCAGCCTGGCGCAGGTTCCCACCGT GGCTACGTCATCAGCGGCGGCAACACAAGGGGGACAGGGTGATGACGACG GCGCCGTGCGGAGAAGGCGTCGCTTCCGAATCATCGCGGGCTTCCTTCAT GTGGTGTGCCGCCTCATCGTGGTAAGTGAGCCCCCGCTGCATCGGTTGGG GCCACGACTAAGTCGTGGACGGAAATTGTCATTGGTTGATCGAATTTTGG GGCGTTTTTGTTTTGGACCAAGAATCTGCTTGAAAACGTGTCTTTTCATC GATACTCAATTACCTCAATTTCTACGCACTCGTGCTTCCCGACGATCTTG TGATTTGGCCGCTGGTGTCAGATGTCACACACAAGTGCCAAACCAAAATT TTCTCCCTGCTGAACATATCTAAAAGTGGAGGCTTCGGGTTCGGCGAGAA ACGCCGAGTTTTCGTCACACGTGCATCTCCCTACCCTCCTCGAGACCTCG CTCGCTCACCCCGTTACCAGACTGGCCGGTTAGGTCAAAGACCGTGACCA ATTGCTGTTAACATGTTTCCACATCTTGAAGGTACCTGCCATCGGTTTCA CCGTTTTTTGGGTGGCAAGAACGCAAAGCTCGGTGATGGGGGAGAACCGG CTGATGCACCTGCTCCTGCTCATCGAGTTCGCCATGCCGTCGGCAGCGGT GAGAGGGAGGGCGTTTTTGCTTCCCATTTCTTTGTAGATGTGATGCATGT TCGCTTCGTTTCCGCGGGCGTGTGGGCGTGAGACGTTGGAGAAGGACCGC GGCGGCGCGCACGTGACAGAGCCAGGTTGGCCATGCACAGAATAGAACGT GACTACCTTCGTTTGACAGGGAGTATAGGTGGAGACGACAGACGTGGATA GCTTCAGCGGTCCAGGATAGGATGAGCCGCTACGGCTGTGTTTTCTCGTC AAGATTAGCGCCCAGTACTGCCGGCGGCAAGCGCCGAAGAAAACACGGAA AACCCTACCGGGAAAGCGCTCATCGCCTTTGTCACACGCACGCACGTAAT GACCAATCACACGTGCCGCCTGGTTATCCCTCTCTGTGATCGACTCTTCC GCAGTTTGTGATCGTGTCCCTGAACCAGCTGCGGATGCCGGCGACCGCCG GCTTCATGGCCCGGCTGTACCTCTGGCAGTACGGGGCGTCGATGCTTACG ATTACCGCGTGGACGGCGTTGGCCGTACACCTCGTGTACTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1295:3774..6915+

>mRNA_E-fasciculatus_F_contig1295.2234.1 ID=mRNA_E-fasciculatus_F_contig1295.2234.1|Name=mRNA_E-fasciculatus_F_contig1295.2234.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1794bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1295:3774..6915+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTACTTTTTCGGGTGGGGATTCTACGCCCTTGGGCACGACGACACGTT
GGAGCGTAGGCTCACCGGACAGCCGGCCAGGACACAAACTTCGTCAACCA
AGGCAAGTGCTGCAGCAAGAGCTACGTCCTCGACGTCATCGGCGCGTCAA
GGGCACGGCGGAATCGGTCGCATCAGCGCGGCGGAATCAGTGGCCATCGA
CATCGAGCCGTGCACGGGAGAAGAAAGCAACAGCGAGGAAACGACGAATG
CCGGTGACACGGGGGGTAGTGGCGACGAAAGCGAGGGGGATCGGTGGGCG
GGGTTCAAGGAGCGGGTCTCGCGTGTTTTGGTGTCGCCAAATATCATCTC
GGTCACGATCGGTGTGGTTATCGCTATGATTGCCCCGCTGCAAGAAATGC
TTTTCGACAACCCGCGGTCGGTACTGCGGCCGCTGGGGGCGGCTCTTCAG
ATGTACTTTTTCGGGTGGGGATTCTACGCCCTTGGGCACGACGACACGTT
GGAGCGTAGGCTCACCGGACAGCCGGCCAGGACACAAACTTCGTCAACCA
AGGCAAGTGCTGCAGCAAGAGCTACGTCCTCGACGTCATCGGCGCGTCAA
GGGCACGGCGGAATCGGTCGCATCAGCGCGGCGGAATCAGTGGCCATCGA
CATCGAGCCGTGCACGGGAGAAGAAAGCAACAGCGAGGAAACGACGAATG
CCGGTGACACGGGGGGTAGTGGCGACGAAAGCGAGGGGGATCGGTGGGCG
GGGTTCAAGGAGCGGGTCTCGCGTGTTTTGGTGTCGCCAAATATCATCTC
GGTCACGATCGGTGTGGTTATCGCTATGATTGCCCCGCTGCAAGAAATGC
TTTTCGACAACCCGCGGTCGGTACTGCGGCCGCTGGGGGCGGCTCTTCAG
ACGGTGGGAACACCCGAGGTGGCGGTGTCGACGCTGGTGATGGCCGGCAG
CCTGGCGCAGGTTCCCACCGTGGCTACGTCATCAGCGGCGGCAACACAAG
GGGGACAGGGTGATGACGACGGCGCCGTGCGGAGAAGGCGTCGCTTCCGA
ATCATCGCGGGCTTCCTTCATGTGGTGTGCCGCCTCATCGTGACGGTGGG
AACACCCGAGGTGGCGGTGTCGACGCTGGTGATGGCCGGCAGCCTGGCGC
AGGTTCCCACCGTGGCTACGTCATCAGCGGCGGCAACACAAGGGGGACAG
GGTGATGACGACGGCGCCGTGCGGAGAAGGCGTCGCTTCCGAATCATCGC
GGGCTTCCTTCATGTGGTGTGCCGCCTCATCGTGGTACCTGCCATCGGTT
TCACCGTTTTTTGGGTGGCAAGAACGCAAAGCTCGGTGATGGGGGAGAAC
CGGCTGATGCACCTGCTCCTGCTCATCGAGTTCGCCATGCCGTCGGCAGC
GGTACCTGCCATCGGTTTCACCGTTTTTTGGGTGGCAAGAACGCAAAGCT
CGGTGATGGGGGAGAACCGGCTGATGCACCTGCTCCTGCTCATCGAGTTC
GCCATGCCGTCGGCAGCGTTTGTGATCGTGTCCCTGAACCAGCTGCGGAT
GCCGGCGACCGCCGGCTTCATGGCCCGGCTGTACCTCTGGCAGTACGGGG
CGTCGATGCTTACGATTACCGCGTGGACGGCGTTGGCCGTACACCTCGTG
TACTAATTTGTGATCGTGTCCCTGAACCAGCTGCGGATGCCGGCGACCGC
CGGCTTCATGGCCCGGCTGTACCTCTGGCAGTACGGGGCGTCGATGCTTA
CGATTACCGCGTGGACGGCGTTGGCCGTACACCTCGTGTACTAA
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