mRNA_E-fasciculatus_F_contig12943.2231.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12943.2231.1
Unique NamemRNA_E-fasciculatus_F_contig12943.2231.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12943.2231.1 vs. uniprot
Match: A0A6H5LIJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 2.530e-16
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 2
Query:    5 RTRCLDAFAVALGQACGGGKKRWYVSTLELQLTSLDMCRAC 127
            RTRCLDAF +AL QAC GG+KRWY STLELQLTSLD+CRAC
Sbjct:    8 RTRCLDAFVIALSQACEGGEKRWYASTLELQLTSLDLCRAC 48          
BLAST of mRNA_E-fasciculatus_F_contig12943.2231.1 vs. uniprot
Match: D7G7F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F9_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 5.430e-14
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 2
Query:    2 GRTRCLDAFAVALGQACGGGKKRWYVSTLELQLTSLDMCRAC 127
            G TR  DAFA+AL QAC GG+KRWY ST ELQL SLD+CRAC
Sbjct:    5 GYTRSFDAFAIALSQACEGGEKRWYTSTTELQLGSLDICRAC 46          
BLAST of mRNA_E-fasciculatus_F_contig12943.2231.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 8.430e-13
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 2
Query:    2 GRTRCLDAFAVALGQACGGGKKRWYVSTLELQLTSLDMCRAC 127
            G ++CLDAF VAL QAC G +KRWYVSTLELQL SL++C AC
Sbjct:    5 GNSKCLDAFVVALNQACDGQEKRWYVSTLELQLVSLEVCGAC 46          
BLAST of mRNA_E-fasciculatus_F_contig12943.2231.1 vs. uniprot
Match: D7G0Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 8.610e-13
Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = 2
Query:    5 RTRCLDAFAVALGQACGGGKKRWYVSTLELQLTSLDMCRAC 127
            R++CLDAF VAL Q C G +KRWY STLELQL SL+ C AC
Sbjct:   38 RSKCLDAFVVALNQTCDGQEKRWYASTLELQLVSLEFCGAC 78          
BLAST of mRNA_E-fasciculatus_F_contig12943.2231.1 vs. uniprot
Match: A0A6H5KVM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVM8_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.600e-11
Identity = 29/41 (70.73%), Postives = 31/41 (75.61%), Query Frame = 2
Query:    2 GRTRCLDAFAVALGQACGGGKKRWYVSTLELQLTSLDMCRA 124
            G T+C DAF VAL QAC GG KR Y STLEL L SLD+CRA
Sbjct:   18 GPTQCFDAFVVALSQACEGGNKRSYTSTLELPLASLDICRA 58          
BLAST of mRNA_E-fasciculatus_F_contig12943.2231.1 vs. uniprot
Match: A0A6H5KLV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 6.500e-11
Identity = 28/42 (66.67%), Postives = 31/42 (73.81%), Query Frame = 2
Query:    2 GRTRCLDAFAVALGQACGGGKKRWYVSTLELQLTSLDMCRAC 127
            GR+ CL AF VAL Q C G +KRWY STLELQL SL+ C AC
Sbjct:   13 GRSECLRAFIVALNQTCNGQEKRWYASTLELQLVSLEFCGAC 54          
BLAST of mRNA_E-fasciculatus_F_contig12943.2231.1 vs. uniprot
Match: A0A6H5K8K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K9_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 9.150e-11
Identity = 30/42 (71.43%), Postives = 32/42 (76.19%), Query Frame = 2
Query:    2 GRTRCLDAFAVALGQACGGGKKRWYVSTLELQLTSLDMCRAC 127
            GR+ CLDAF VAL QA  G  KRWYVSTLELQL SL+ C AC
Sbjct:   25 GRSECLDAFIVALKQAGDGRAKRWYVSTLELQLVSLEFCGAC 66          
BLAST of mRNA_E-fasciculatus_F_contig12943.2231.1 vs. uniprot
Match: A0A6H5L1V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 3.190e-10
Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = 2
Query:   11 RCLDAFAVALGQACGGGKKRWYVSTLELQLTSLDMCRAC 127
            RCLDAF VAL Q   GG+KRWY STL+LQL SL+ C AC
Sbjct:    8 RCLDAFVVALSQCYEGGEKRWYTSTLQLQLASLEFCGAC 46          
BLAST of mRNA_E-fasciculatus_F_contig12943.2231.1 vs. uniprot
Match: D7FTK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK8_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 2.330e-9
Identity = 26/37 (70.27%), Postives = 29/37 (78.38%), Query Frame = 2
Query:   17 LDAFAVALGQACGGGKKRWYVSTLELQLTSLDMCRAC 127
            LD   VAL QAC G +KRWYVSTLELQL SL++C AC
Sbjct:   90 LDTLIVALNQACDGQEKRWYVSTLELQLVSLELCGAC 126          
BLAST of mRNA_E-fasciculatus_F_contig12943.2231.1 vs. uniprot
Match: A0A6H5JFC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC0_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.690e-8
Identity = 28/42 (66.67%), Postives = 31/42 (73.81%), Query Frame = 2
Query:    2 GRTRCLDAFAVALGQACGGGKKRWYVSTLELQLTSLDMCRAC 127
            G +RCLDAF VAL QAC GG   WYVST +LQL+SL  C AC
Sbjct:   26 GPSRCLDAFKVALNQACDGGG--WYVSTEQLQLSSLPFCVAC 65          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12943.2231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5LIJ3_9PHAE2.530e-1682.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7F9_ECTSI5.430e-1473.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNI6_9PHAE8.430e-1371.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0Z9_ECTSI8.610e-1368.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVM8_9PHAE1.600e-1170.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLV1_9PHAE6.500e-1166.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8K9_9PHAE9.150e-1171.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1V9_9PHAE3.190e-1069.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTK8_ECTSI2.330e-970.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFC0_9PHAE1.690e-866.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12943contigE-fasciculatus_F_contig12943:3694..3822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size129
Cds size129
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927798.7512946-CDS-E-fasciculatus_F_contig12943:3693..38221622927798.7512946-CDS-E-fasciculatus_F_contig12943:3693..3822Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12943 3694..3822 +
1695995699.509258-CDS-E-fasciculatus_F_contig12943:3693..38221695995699.509258-CDS-E-fasciculatus_F_contig12943:3693..3822Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12943 3694..3822 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12943.2231.1prot_E-fasciculatus_F_contig12943.2231.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12943 3694..3822 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12943.2231.1

>prot_E-fasciculatus_F_contig12943.2231.1 ID=prot_E-fasciculatus_F_contig12943.2231.1|Name=mRNA_E-fasciculatus_F_contig12943.2231.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=43bp
RAYPVPRCLRRRLGPSMRGREEALVCLDTGAAADLVGHVQGVP
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mRNA from alignment at E-fasciculatus_F_contig12943:3694..3822+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12943.2231.1 ID=mRNA_E-fasciculatus_F_contig12943.2231.1|Name=mRNA_E-fasciculatus_F_contig12943.2231.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=129bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12943:3694..3822+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGGCGTACCCGGTGCCTCGATGCCTTCGCCGTCGCCTTGGGCCAAGCAT GCGGGGGAGGGAAGAAGCGCTGGTATGTCTCGACACTGGAGCTGCAGCTG ACCTCGTTGGACATGTGCAGGGCGTGCCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12943:3694..3822+

>mRNA_E-fasciculatus_F_contig12943.2231.1 ID=mRNA_E-fasciculatus_F_contig12943.2231.1|Name=mRNA_E-fasciculatus_F_contig12943.2231.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=258bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12943:3694..3822+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGGCGTACCCGGTGCCTCGATGCCTTCGCCGTCGCCTTGGGCCAAGCAT
GCGGGGGAGGGAAGAAGCGCTGGTATGTCTCGACACTGGAGCTGCAGCTG
ACCTCGTTGGACATGTGCAGGGCGTGCCGAGGGCGTACCCGGTGCCTCGA
TGCCTTCGCCGTCGCCTTGGGCCAAGCATGCGGGGGAGGGAAGAAGCGCT
GGTATGTCTCGACACTGGAGCTGCAGCTGACCTCGTTGGACATGTGCAGG
GCGTGCCG
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