mRNA_E-fasciculatus_F_contig12922.2214.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12922.2214.1 vs. uniprot
Match: A0A6H5JXY9_9PHAE (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY9_9PHAE) HSP 1 Score: 481 bits (1239), Expect = 8.080e-156 Identity = 281/357 (78.71%), Postives = 303/357 (84.87%), Query Frame = 1
Query: 1 PLAASSPPTDGVVARAEATGGVSG---SPTKTAPDG-GKELGLEVPVPAAAAAVYFDDEADFLEKSASEYAEMMRDQDEEDEYLSGFSFAPXXXXXXXXXXXXXXXXXXXXXXP---SGGVASAGSPVESGSSTPSGAGVAIIPRANLSEGSHTLVLVDVETTGLQAKQGRVIQLAAKVLGSEDPGHSFAEYIDPGTVGVPAKVREITGITPEILAANGARPFPEVWPKFAEWLSGVVAEEQGQGRGESGVVFVAHNAQFDYRFLKEELSRCGFSRFMMGQDMGVVSVVDSLKCLKEDSLWRQRASDFNMPTRPNTFKLGGVFEHLYGYEMPGAHDALGDVVGLERILSAPGIKERW 1050
PLAASS D VV RAEAT GV G S T T PD KE G E+ VPAA VYFDDEADFLEKSASEYAEMM DQDEEDEYLSGFSFAP XXXXXXXXXXXXXXXXXX SGGVA G+PV PSG GVAII RA+LSEG+HT+V+VDVETTGL+AK+ RVIQLAAKVLGSE+P HSFAEYIDPG VGVP +VREITGITPEILAANGARPFP+VWP+FA WLSGVVAEEQ +GRGE GVVFVAHNAQFD++FLKEELSRCGFSRFMMGQDMGVV +VDSL+CLKE+SLWRQ+ASDF+MPTRP FKLGGVFEHLYGYEMP AH+A+GDVVGLERILSAPGI E W
Sbjct: 995 PLAASSSTPDFVV-RAEATAGVGGVLDSRTTTGPDSRSKEPGPELAVPAA---VYFDDEADFLEKSASEYAEMMEDQDEEDEYLSGFSFAPPLQPXXXXXXXXXXXXXXXXXXXXXFSGGVAPTGTPVGGXXGAPSGEGVAIIRRADLSEGTHTVVVVDVETTGLRAKEDRVIQLAAKVLGSENPRHSFAEYIDPGVVGVPPRVREITGITPEILAANGARPFPQVWPEFAAWLSGVVAEEQAEGRGEGGVVFVAHNAQFDHKFLKEELSRCGFSRFMMGQDMGVVCIVDSLRCLKENSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPNAHNAMGDVVGLERILSAPGINEGW 1347
BLAST of mRNA_E-fasciculatus_F_contig12922.2214.1 vs. uniprot
Match: D7FPN7_ECTSI (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN7_ECTSI) HSP 1 Score: 466 bits (1199), Expect = 1.300e-153 Identity = 272/353 (77.05%), Postives = 298/353 (84.42%), Query Frame = 1
Query: 1 PLAASSPPTDGVVARAEATG--GVSGSPTKTAP-DGGKELGLEVPVPAAAAAVYFDDEADFLEKSASEYAEMMRDQDEEDEYLSGFSFAPXXXXXXXXXXXXXXXXXXXXXXPSGGVASAGSPVESGSSTPSGAGVAIIPRANLSEGSHTLVLVDVETTGLQAKQGRVIQLAAKVLGSEDPGHSFAEYIDPGTVGVPAKVREITGITPEILAANGARPFPEVWPKFAEWLSGVVAEEQGQGRGESGVVFVAHNAQFDYRFLKEELSRCGFSRFMMGQDMGVVSVVDSLKCLKEDSLWRQRASDFNMPTRPNTFKLGGVFEHLYGYEMPGAHDALGDVVGLERILSAPGIKERW 1050
P ++SS P A AEAT GVSGS P GKE G E+ VPAA VYFDDEADFLEKSASEYAEMM QDEEDEYLSGFSFAPXXXXXXXXXXXXXXXXXXXXXX SG VA G PV + G GVAII RA+LSEG+HT+V+VDVETTGL+AK+ RVIQLAAKVLGSE+P HSFAE++DPG VGVP +VREITGITPEILAANGARPFP+VWP+FA WLSGVVAEEQ +GRGE GVVFVAHNAQFD++FLKEE+SRCGFSRFMMGQDMGVV +VDSL+CLKE SLWRQ+ASDF+MPTRP FKLGGVFEHLYGYEMP AH+A+GDVVGLERILSAPGI E W
Sbjct: 599 PASSSSAPDFAARAEAEATAAVGVSGSRMTAGPGSSGKEPGPELAVPAA---VYFDDEADFLEKSASEYAEMMEGQDEEDEYLSGFSFAPXXXXXXXXXXXXXXXXXXXXXXSSGEVAPTGPPVGADGGASRGEGVAIIRRADLSEGTHTVVVVDVETTGLRAKEDRVIQLAAKVLGSENPRHSFAEFVDPGAVGVPPRVREITGITPEILAANGARPFPQVWPEFAAWLSGVVAEEQAEGRGEGGVVFVAHNAQFDHKFLKEEVSRCGFSRFMMGQDMGVVCIVDSLRCLKESSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPDAHNAMGDVVGLERILSAPGINEGW 948
BLAST of mRNA_E-fasciculatus_F_contig12922.2214.1 vs. uniprot
Match: A0A7S1Z4X3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z4X3_9STRA) HSP 1 Score: 115 bits (288), Expect = 6.140e-25 Identity = 72/218 (33.03%), Postives = 112/218 (51.38%), Query Frame = 1
Query: 445 VLVDVETTGLQAKQGRVIQLAAKVLGSEDPGHSFAEYIDPGTVGVPAKVREITGITPEILAANGARP------------FPEVWPKFAEWLSGVVAEEQGQGRGESGVVFVAHNAQFDYRFLKEELSRCGFSRFMMGQ----------DMGVVSVVDSLKCLKEDSLWRQRASDFNMPTRPNTFKLGGVFEHLYGYEMPGAHDALGDVVGLERILSAP 1032
+++D+ETTGL K + Q+AAKVLGS DP F+ Y+ P V VP + ++TGI L G P F +V+ F + +E+ +GR + +AHNA FD L+ + R S +G+ D G+ + VD+L+ +K + LWR + + RP++F L V+ H+ M AH+A+GD++GLE IL +P
Sbjct: 264 LILDLETTGLCTKSSYITQIAAKVLGSTDPSDIFSAYVRP-PVRVPPHIEKLTGIKDHFLRHGGMDPSTGEMLHGPADEFYDVYVHFCAFC-----KEKSEGRP---ICIMAHNAAFDINMLQAHVRRLAASYQKLGKTGKELPFLTRDTGIQTSVDTLQMMKTNKLWRSSRTYSSALPRPSSFGLSNVYSHILKKPMKTAHNAVGDILGLEEILMSP 472
BLAST of mRNA_E-fasciculatus_F_contig12922.2214.1 vs. uniprot
Match: A0A7S3UQS9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UQS9_HETAK) HSP 1 Score: 105 bits (263), Expect = 1.930e-23 Identity = 72/169 (42.60%), Postives = 90/169 (53.25%), Query Frame = 1
Query: 442 LVLVDVETTGLQAKQGRVIQLAAKVLGSEDPGHSFAEYIDPGTVGVPAK-VREITGITPEILAANGARPFPEVWPKFAEWLSGVVAEEQGQGRGESGVVFVAHNAQFDYRFLKEELSRC----------------GFSRFMMGQDMGVVSVVDSLKCLKEDSLWRQRAS 897
+VL+DVETTGL A + RV+QLAAKVLGS PG +FA YI P A+ RE+TGIT E+L GA PF E W F WL+ VV VAHNA FD RFL+ E+ R R + ++ V +VV + K LK+ SLW RA+
Sbjct: 42 IVLLDVETTGLDAGRHRVLQLAAKVLGSRAPGAAFATYIRPPENTPWAEGAREVTGITWEVLEKEGALPFSEAWALFRRWLA--------------EVVLVAHNAPFDRRFLEAEIERLLPNVGGXXXXXXXXXXXXXRGALARE-NVAAVVCTWKLLKDRSLWAPRAA 195
BLAST of mRNA_E-fasciculatus_F_contig12922.2214.1 vs. uniprot
Match: A0A6U4I7J2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4I7J2_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 8.880e-19 Identity = 78/239 (32.64%), Postives = 108/239 (45.19%), Query Frame = 1
Query: 469 GLQAKQGRVIQLAAKVLGSEDPGHSFAEYIDPGTVGVPAKVREITGITPEILAANGARPFPEVWPKFAEWLS------GVVAE----------EQGQGRGE-------------------SGVVFVAHNAQFDYRFLKEELSRCGFSR----------FMMGQDMGVVSVVDSLKCLKEDSLWRQRASDFNMPTRPNTFKLGGVFEHLYGYEMPGAHDALGDVVGLERILSAPGIKERW 1050
G Q+ + +A +G+ D G F+ ++ P GVP V ++TGI + L A+PFP VW F +WL+ G+ A E G+ E VVF AHNA FD R L EL R G + F GQ+ GVVS + +L+ + ++W D +P P+ +K +FEHL G EM AH+A GDV+GLERIL W
Sbjct: 1129 GTQSASPSDVDKSAAFVGNHD-GMLFSRFVQPSK-GVPEVVAKLTGIDDDRLREAEAQPFPAVWKDFRKWLARQRLQAGIKAAVLDKMSRLSFEDGREEAELYEELAGYAAGIDPESVPLPPVVFAAHNAPFDSRMLLAELQRHGEALNLPASGLAFGFGFGQE-GVVSFMCTLRLFRNKAVWH----DMRVPAPPS-YKQEVIFEHLVGEEMSAAHNAAGDVLGLERILVESSAGPIW 1359
BLAST of mRNA_E-fasciculatus_F_contig12922.2214.1 vs. uniprot
Match: A0A7S3RKQ1_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RKQ1_EMIHU) HSP 1 Score: 79.0 bits (193), Expect = 3.330e-13 Identity = 70/202 (34.65%), Postives = 90/202 (44.55%), Query Frame = 1
Query: 454 DVETTGLQAKQGRVIQLAAKVLGSE-DPGHSFAEY------IDPGTVGVPAKVREITGITPEILAANGARPFPEVWPKFAEWLSGVVAEEQGQGRGESGVVFVAHNAQFDYRFLKEELSRCGFSRFMMGQDMGVVSVVDSLKCLKEDSLWRQRASDFNMP--TR--PNTFKLGGVFEHLY--GYEMPGAHDALGDVVGLERI 1020
D+ETTGL + ++Q A V S + G SF E+ IDPG V TGIT ++LA GARPF EVW F WL + E +V+ AHN RF L RC + G ++ + D+L RA+ P TR P F LG +FE G + GAHDAL D L R+
Sbjct: 51 DLETTGLNTDEAEIVQFACVVANSRREGGASFCEFVMPQCEIDPGASAV-------TGITKQLLAERGARPFAEVWATFEGWLRETLVSETRP------LVWSAHNGD---RFDVPILRRC-----VRDATGGPSPLLSEPRAAFVDTLPLARAALRPRPRYTRGAPGPFTLGALFERASPRGGALEGAHDALVDAEALARV 231
BLAST of mRNA_E-fasciculatus_F_contig12922.2214.1 vs. uniprot
Match: A0A2G0CGV1_9BACT (DNA polymerase III subunit epsilon n=5 Tax=Lewinella TaxID=70994 RepID=A0A2G0CGV1_9BACT) HSP 1 Score: 75.5 bits (184), Expect = 2.360e-11 Identity = 58/192 (30.21%), Postives = 91/192 (47.40%), Query Frame = 1
Query: 448 LVDVETTGLQAKQGRVIQLAAKVLGSEDPGHSFAEYIDPGTVGVPAKVREITGITPEILAANGARPFPEVWPKFAEWLSGVVAEEQGQGRGESGVVFVAHNAQFDYRFLKEELSRCGFSRFMMGQDMGVVSVVDSLKCLKEDSLWRQRASDFNMPTRPNTFKLGGVFEHLYGYEMPGAHDALGDVVGLERIL 1023
+VD+ETTG +A + R+ ++ V E ++ IDP +PA + E+TGIT E++A PKF E +V +G+ +FVAHNA+FDY FL+ E R G++ F Q + +V + KC P P+ + LG + H +G+++ H AL D +L
Sbjct: 8 IVDIETTGGRASRSRITEIGIVVYDGEKVTETYETLIDPEQY-IPAGIVELTGITQEMVAGQ---------PKFYEVAKRIVELTEGR-------IFVAHNAKFDYGFLRAEFGRLGYT-FSRRQ---LCTVRLARKCF---------------PGLPS-YSLGNLIRH-FGFQVDARHRALADAQATTELL 161
BLAST of mRNA_E-fasciculatus_F_contig12922.2214.1 vs. uniprot
Match: A0A7C1WBY2_9PROT (DNA-directed DNA polymerase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A7C1WBY2_9PROT) HSP 1 Score: 70.5 bits (171), Expect = 6.690e-11 Identity = 70/198 (35.35%), Postives = 95/198 (47.98%), Query Frame = 1
Query: 445 VLVDVETTGLQAKQG-RVIQLAAKVLGSEDPGHSFAEYIDPGTVG--VPAKVREITGITPEILAANGARPFPE-VWPKFAEWLSGVVAEEQGQGRGESGVVFVAHNAQFDYRFLKEELSRCGFSRFMMGQDMGVVSVVDSLKCLKEDSLWRQRASDFNMPTRPNTFKLGGVFEHLYGYEMPG--AHDALGDVVGLERI 1020
V++DVETTGL G RVI++ A + + G + AE+ V +P V++I GIT E+L N P PE V+P+F E++ G S + VAHNAQFD RFL+ EL R G + + + +C E S R P PN KL VF HL+G AH AL D + R+
Sbjct: 4 VVLDVETTGLSPVNGDRVIEVGAVAI---EAGIALAEFHSLVFVRKPIPTLVQQIHGITNEMLVGN---PEPEEVFPRFREFI------------GNS--ILVAHNAQFDIRFLQHELGRLG------------LGLNNRYRCTLEMSRKRY-------PWLPN-HKLETVFRHLFGKSTTETQAHRALSDARMVARV 161
BLAST of mRNA_E-fasciculatus_F_contig12922.2214.1 vs. uniprot
Match: A0A1V5MS93_9BACT (DNA polymerase III PolC-type n=1 Tax=Bacteroidetes bacterium ADurb.Bin408 TaxID=1852813 RepID=A0A1V5MS93_9BACT) HSP 1 Score: 70.1 bits (170), Expect = 1.170e-10 Identity = 58/192 (30.21%), Postives = 88/192 (45.83%), Query Frame = 1
Query: 448 LVDVETTGLQAKQGRVIQLAAKVLGSEDPGHSFAEYIDPGTVGVPAKVREITGITPEILAANGARPFPEVWPKFAEWLSGVVAEEQGQGRGESGVVFVAHNAQFDYRFLKEELSRCGFSRFMMGQDMGVVSVVDSLKCLKEDSLWRQRASDFNMPTRPNTFKLGGVFEHLYGYEMPGAHDALGDVVGLERIL 1023
++D+ETTG K GR+ ++A V E F I+P V +P + +TGIT E++A P+F E ++G + EE +GR +FVAHN FDY+F++EE SR G+ L + S +P + + LG + E L G E+ H A GD + R+
Sbjct: 4 IIDIETTGTVYKYGRITEIALYVHNGERVTEQFQTLINP-EVDIPLYITRMTGITNEMVATA---------PRFYE-IAGKL-EELTEGR-----IFVAHNVNFDYQFIREEFSRIGY-------------------IFNRKKLCTVQLSRKFLPGHAS-YSLGRLCEEL-GIELNDRHRASGDALATVRLF 157
BLAST of mRNA_E-fasciculatus_F_contig12922.2214.1 vs. uniprot
Match: UPI001EE81B9F (exonuclease domain-containing protein n=1 Tax=Lewinella maritima TaxID=1383882 RepID=UPI001EE81B9F) HSP 1 Score: 73.2 bits (178), Expect = 1.360e-10 Identity = 57/194 (29.38%), Postives = 88/194 (45.36%), Query Frame = 1
Query: 448 LVDVETTGLQAKQGRVIQLAAKVLGSEDPGHSFAEYIDPGTVGVPAKVREITGITPEILAANGARPFPEVWPKFAEWLSGVVAEEQGQGRGESGVVFVAHNAQFDYRFLKEELSRCG--FSRFMMGQDMGVVSVVDSLKCLKEDSLWRQRASDFNMPTRPNTFKLGGVFEHLYGYEMPGAHDALGDVVGLERIL 1023
+VD+ETTG +A + R+ ++ V E +F +DP +PA + E+TGIT E++ PKF E +V +G+ +FVAHNA+FDY FL+EE R G FSR + +V + KC ++ LG + +H +G+ + H AL D +L
Sbjct: 8 IVDIETTGSRASRARITEIGIVVFDGEKVTETFETLLDPEQY-IPAGIVELTGITQEMVKGK---------PKFYEVAKRIVELTEGR-------IFVAHNAKFDYGFLREEFGRLGYTFSRRKL------CTVRLTRKCFPG----------------LKSYSLGKLIQH-FGFTVEARHRALADAQATTELL 161 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12922.2214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12922.2214.1 >prot_E-fasciculatus_F_contig12922.2214.1 ID=prot_E-fasciculatus_F_contig12922.2214.1|Name=mRNA_E-fasciculatus_F_contig12922.2214.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=350bp PLAASSPPTDGVVARAEATGGVSGSPTKTAPDGGKELGLEVPVPAAAAAVback to top mRNA from alignment at E-fasciculatus_F_contig12922:6..3343+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12922.2214.1 ID=mRNA_E-fasciculatus_F_contig12922.2214.1|Name=mRNA_E-fasciculatus_F_contig12922.2214.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3338bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12922:6..3343+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12922:6..3343+ >mRNA_E-fasciculatus_F_contig12922.2214.1 ID=mRNA_E-fasciculatus_F_contig12922.2214.1|Name=mRNA_E-fasciculatus_F_contig12922.2214.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2100bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12922:6..3343+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |