mRNA_E-fasciculatus_F_contig12922.2214.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12922.2214.1
Unique NamemRNA_E-fasciculatus_F_contig12922.2214.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12922.2214.1 vs. uniprot
Match: A0A6H5JXY9_9PHAE (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY9_9PHAE)

HSP 1 Score: 481 bits (1239), Expect = 8.080e-156
Identity = 281/357 (78.71%), Postives = 303/357 (84.87%), Query Frame = 1
Query:    1 PLAASSPPTDGVVARAEATGGVSG---SPTKTAPDG-GKELGLEVPVPAAAAAVYFDDEADFLEKSASEYAEMMRDQDEEDEYLSGFSFAPXXXXXXXXXXXXXXXXXXXXXXP---SGGVASAGSPVESGSSTPSGAGVAIIPRANLSEGSHTLVLVDVETTGLQAKQGRVIQLAAKVLGSEDPGHSFAEYIDPGTVGVPAKVREITGITPEILAANGARPFPEVWPKFAEWLSGVVAEEQGQGRGESGVVFVAHNAQFDYRFLKEELSRCGFSRFMMGQDMGVVSVVDSLKCLKEDSLWRQRASDFNMPTRPNTFKLGGVFEHLYGYEMPGAHDALGDVVGLERILSAPGIKERW 1050
            PLAASS   D VV RAEAT GV G   S T T PD   KE G E+ VPAA   VYFDDEADFLEKSASEYAEMM DQDEEDEYLSGFSFAP    XXXXXXXXXXXXXXXXXX    SGGVA  G+PV      PSG GVAII RA+LSEG+HT+V+VDVETTGL+AK+ RVIQLAAKVLGSE+P HSFAEYIDPG VGVP +VREITGITPEILAANGARPFP+VWP+FA WLSGVVAEEQ +GRGE GVVFVAHNAQFD++FLKEELSRCGFSRFMMGQDMGVV +VDSL+CLKE+SLWRQ+ASDF+MPTRP  FKLGGVFEHLYGYEMP AH+A+GDVVGLERILSAPGI E W
Sbjct:  995 PLAASSSTPDFVV-RAEATAGVGGVLDSRTTTGPDSRSKEPGPELAVPAA---VYFDDEADFLEKSASEYAEMMEDQDEEDEYLSGFSFAPPLQPXXXXXXXXXXXXXXXXXXXXXFSGGVAPTGTPVGGXXGAPSGEGVAIIRRADLSEGTHTVVVVDVETTGLRAKEDRVIQLAAKVLGSENPRHSFAEYIDPGVVGVPPRVREITGITPEILAANGARPFPQVWPEFAAWLSGVVAEEQAEGRGEGGVVFVAHNAQFDHKFLKEELSRCGFSRFMMGQDMGVVCIVDSLRCLKENSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPNAHNAMGDVVGLERILSAPGINEGW 1347          
BLAST of mRNA_E-fasciculatus_F_contig12922.2214.1 vs. uniprot
Match: D7FPN7_ECTSI (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN7_ECTSI)

HSP 1 Score: 466 bits (1199), Expect = 1.300e-153
Identity = 272/353 (77.05%), Postives = 298/353 (84.42%), Query Frame = 1
Query:    1 PLAASSPPTDGVVARAEATG--GVSGSPTKTAP-DGGKELGLEVPVPAAAAAVYFDDEADFLEKSASEYAEMMRDQDEEDEYLSGFSFAPXXXXXXXXXXXXXXXXXXXXXXPSGGVASAGSPVESGSSTPSGAGVAIIPRANLSEGSHTLVLVDVETTGLQAKQGRVIQLAAKVLGSEDPGHSFAEYIDPGTVGVPAKVREITGITPEILAANGARPFPEVWPKFAEWLSGVVAEEQGQGRGESGVVFVAHNAQFDYRFLKEELSRCGFSRFMMGQDMGVVSVVDSLKCLKEDSLWRQRASDFNMPTRPNTFKLGGVFEHLYGYEMPGAHDALGDVVGLERILSAPGIKERW 1050
            P ++SS P     A AEAT   GVSGS     P   GKE G E+ VPAA   VYFDDEADFLEKSASEYAEMM  QDEEDEYLSGFSFAPXXXXXXXXXXXXXXXXXXXXXX SG VA  G PV +      G GVAII RA+LSEG+HT+V+VDVETTGL+AK+ RVIQLAAKVLGSE+P HSFAE++DPG VGVP +VREITGITPEILAANGARPFP+VWP+FA WLSGVVAEEQ +GRGE GVVFVAHNAQFD++FLKEE+SRCGFSRFMMGQDMGVV +VDSL+CLKE SLWRQ+ASDF+MPTRP  FKLGGVFEHLYGYEMP AH+A+GDVVGLERILSAPGI E W
Sbjct:  599 PASSSSAPDFAARAEAEATAAVGVSGSRMTAGPGSSGKEPGPELAVPAA---VYFDDEADFLEKSASEYAEMMEGQDEEDEYLSGFSFAPXXXXXXXXXXXXXXXXXXXXXXSSGEVAPTGPPVGADGGASRGEGVAIIRRADLSEGTHTVVVVDVETTGLRAKEDRVIQLAAKVLGSENPRHSFAEFVDPGAVGVPPRVREITGITPEILAANGARPFPQVWPEFAAWLSGVVAEEQAEGRGEGGVVFVAHNAQFDHKFLKEEVSRCGFSRFMMGQDMGVVCIVDSLRCLKESSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPDAHNAMGDVVGLERILSAPGINEGW 948          
BLAST of mRNA_E-fasciculatus_F_contig12922.2214.1 vs. uniprot
Match: A0A7S1Z4X3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z4X3_9STRA)

HSP 1 Score: 115 bits (288), Expect = 6.140e-25
Identity = 72/218 (33.03%), Postives = 112/218 (51.38%), Query Frame = 1
Query:  445 VLVDVETTGLQAKQGRVIQLAAKVLGSEDPGHSFAEYIDPGTVGVPAKVREITGITPEILAANGARP------------FPEVWPKFAEWLSGVVAEEQGQGRGESGVVFVAHNAQFDYRFLKEELSRCGFSRFMMGQ----------DMGVVSVVDSLKCLKEDSLWRQRASDFNMPTRPNTFKLGGVFEHLYGYEMPGAHDALGDVVGLERILSAP 1032
            +++D+ETTGL  K   + Q+AAKVLGS DP   F+ Y+ P  V VP  + ++TGI    L   G  P            F +V+  F  +      +E+ +GR    +  +AHNA FD   L+  + R   S   +G+          D G+ + VD+L+ +K + LWR   +  +   RP++F L  V+ H+    M  AH+A+GD++GLE IL +P
Sbjct:  264 LILDLETTGLCTKSSYITQIAAKVLGSTDPSDIFSAYVRP-PVRVPPHIEKLTGIKDHFLRHGGMDPSTGEMLHGPADEFYDVYVHFCAFC-----KEKSEGRP---ICIMAHNAAFDINMLQAHVRRLAASYQKLGKTGKELPFLTRDTGIQTSVDTLQMMKTNKLWRSSRTYSSALPRPSSFGLSNVYSHILKKPMKTAHNAVGDILGLEEILMSP 472          
BLAST of mRNA_E-fasciculatus_F_contig12922.2214.1 vs. uniprot
Match: A0A7S3UQS9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UQS9_HETAK)

HSP 1 Score: 105 bits (263), Expect = 1.930e-23
Identity = 72/169 (42.60%), Postives = 90/169 (53.25%), Query Frame = 1
Query:  442 LVLVDVETTGLQAKQGRVIQLAAKVLGSEDPGHSFAEYIDPGTVGVPAK-VREITGITPEILAANGARPFPEVWPKFAEWLSGVVAEEQGQGRGESGVVFVAHNAQFDYRFLKEELSRC----------------GFSRFMMGQDMGVVSVVDSLKCLKEDSLWRQRAS 897
            +VL+DVETTGL A + RV+QLAAKVLGS  PG +FA YI P      A+  RE+TGIT E+L   GA PF E W  F  WL+               VV VAHNA FD RFL+ E+ R                    R  + ++  V +VV + K LK+ SLW  RA+
Sbjct:   42 IVLLDVETTGLDAGRHRVLQLAAKVLGSRAPGAAFATYIRPPENTPWAEGAREVTGITWEVLEKEGALPFSEAWALFRRWLA--------------EVVLVAHNAPFDRRFLEAEIERLLPNVGGXXXXXXXXXXXXXRGALARE-NVAAVVCTWKLLKDRSLWAPRAA 195          
BLAST of mRNA_E-fasciculatus_F_contig12922.2214.1 vs. uniprot
Match: A0A6U4I7J2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4I7J2_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 8.880e-19
Identity = 78/239 (32.64%), Postives = 108/239 (45.19%), Query Frame = 1
Query:  469 GLQAKQGRVIQLAAKVLGSEDPGHSFAEYIDPGTVGVPAKVREITGITPEILAANGARPFPEVWPKFAEWLS------GVVAE----------EQGQGRGE-------------------SGVVFVAHNAQFDYRFLKEELSRCGFSR----------FMMGQDMGVVSVVDSLKCLKEDSLWRQRASDFNMPTRPNTFKLGGVFEHLYGYEMPGAHDALGDVVGLERILSAPGIKERW 1050
            G Q+     +  +A  +G+ D G  F+ ++ P   GVP  V ++TGI  + L    A+PFP VW  F +WL+      G+ A           E G+   E                     VVF AHNA FD R L  EL R G +           F  GQ+ GVVS + +L+  +  ++W     D  +P  P+ +K   +FEHL G EM  AH+A GDV+GLERIL        W
Sbjct: 1129 GTQSASPSDVDKSAAFVGNHD-GMLFSRFVQPSK-GVPEVVAKLTGIDDDRLREAEAQPFPAVWKDFRKWLARQRLQAGIKAAVLDKMSRLSFEDGREEAELYEELAGYAAGIDPESVPLPPVVFAAHNAPFDSRMLLAELQRHGEALNLPASGLAFGFGFGQE-GVVSFMCTLRLFRNKAVWH----DMRVPAPPS-YKQEVIFEHLVGEEMSAAHNAAGDVLGLERILVESSAGPIW 1359          
BLAST of mRNA_E-fasciculatus_F_contig12922.2214.1 vs. uniprot
Match: A0A7S3RKQ1_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RKQ1_EMIHU)

HSP 1 Score: 79.0 bits (193), Expect = 3.330e-13
Identity = 70/202 (34.65%), Postives = 90/202 (44.55%), Query Frame = 1
Query:  454 DVETTGLQAKQGRVIQLAAKVLGSE-DPGHSFAEY------IDPGTVGVPAKVREITGITPEILAANGARPFPEVWPKFAEWLSGVVAEEQGQGRGESGVVFVAHNAQFDYRFLKEELSRCGFSRFMMGQDMGVVSVVDSLKCLKEDSLWRQRASDFNMP--TR--PNTFKLGGVFEHLY--GYEMPGAHDALGDVVGLERI 1020
            D+ETTGL   +  ++Q A  V  S  + G SF E+      IDPG   V       TGIT ++LA  GARPF EVW  F  WL   +  E         +V+ AHN     RF    L RC     +     G   ++   +    D+L   RA+    P  TR  P  F LG +FE     G  + GAHDAL D   L R+
Sbjct:   51 DLETTGLNTDEAEIVQFACVVANSRREGGASFCEFVMPQCEIDPGASAV-------TGITKQLLAERGARPFAEVWATFEGWLRETLVSETRP------LVWSAHNGD---RFDVPILRRC-----VRDATGGPSPLLSEPRAAFVDTLPLARAALRPRPRYTRGAPGPFTLGALFERASPRGGALEGAHDALVDAEALARV 231          
BLAST of mRNA_E-fasciculatus_F_contig12922.2214.1 vs. uniprot
Match: A0A2G0CGV1_9BACT (DNA polymerase III subunit epsilon n=5 Tax=Lewinella TaxID=70994 RepID=A0A2G0CGV1_9BACT)

HSP 1 Score: 75.5 bits (184), Expect = 2.360e-11
Identity = 58/192 (30.21%), Postives = 91/192 (47.40%), Query Frame = 1
Query:  448 LVDVETTGLQAKQGRVIQLAAKVLGSEDPGHSFAEYIDPGTVGVPAKVREITGITPEILAANGARPFPEVWPKFAEWLSGVVAEEQGQGRGESGVVFVAHNAQFDYRFLKEELSRCGFSRFMMGQDMGVVSVVDSLKCLKEDSLWRQRASDFNMPTRPNTFKLGGVFEHLYGYEMPGAHDALGDVVGLERIL 1023
            +VD+ETTG +A + R+ ++   V   E    ++   IDP    +PA + E+TGIT E++A           PKF E    +V   +G+       +FVAHNA+FDY FL+ E  R G++ F   Q   + +V  + KC                P  P+ + LG +  H +G+++   H AL D      +L
Sbjct:    8 IVDIETTGGRASRSRITEIGIVVYDGEKVTETYETLIDPEQY-IPAGIVELTGITQEMVAGQ---------PKFYEVAKRIVELTEGR-------IFVAHNAKFDYGFLRAEFGRLGYT-FSRRQ---LCTVRLARKCF---------------PGLPS-YSLGNLIRH-FGFQVDARHRALADAQATTELL 161          
BLAST of mRNA_E-fasciculatus_F_contig12922.2214.1 vs. uniprot
Match: A0A7C1WBY2_9PROT (DNA-directed DNA polymerase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A7C1WBY2_9PROT)

HSP 1 Score: 70.5 bits (171), Expect = 6.690e-11
Identity = 70/198 (35.35%), Postives = 95/198 (47.98%), Query Frame = 1
Query:  445 VLVDVETTGLQAKQG-RVIQLAAKVLGSEDPGHSFAEYIDPGTVG--VPAKVREITGITPEILAANGARPFPE-VWPKFAEWLSGVVAEEQGQGRGESGVVFVAHNAQFDYRFLKEELSRCGFSRFMMGQDMGVVSVVDSLKCLKEDSLWRQRASDFNMPTRPNTFKLGGVFEHLYGYEMPG--AHDALGDVVGLERI 1020
            V++DVETTGL    G RVI++ A  +   + G + AE+     V   +P  V++I GIT E+L  N   P PE V+P+F E++            G S  + VAHNAQFD RFL+ EL R G            + + +  +C  E S  R        P  PN  KL  VF HL+G       AH AL D   + R+
Sbjct:    4 VVLDVETTGLSPVNGDRVIEVGAVAI---EAGIALAEFHSLVFVRKPIPTLVQQIHGITNEMLVGN---PEPEEVFPRFREFI------------GNS--ILVAHNAQFDIRFLQHELGRLG------------LGLNNRYRCTLEMSRKRY-------PWLPN-HKLETVFRHLFGKSTTETQAHRALSDARMVARV 161          
BLAST of mRNA_E-fasciculatus_F_contig12922.2214.1 vs. uniprot
Match: A0A1V5MS93_9BACT (DNA polymerase III PolC-type n=1 Tax=Bacteroidetes bacterium ADurb.Bin408 TaxID=1852813 RepID=A0A1V5MS93_9BACT)

HSP 1 Score: 70.1 bits (170), Expect = 1.170e-10
Identity = 58/192 (30.21%), Postives = 88/192 (45.83%), Query Frame = 1
Query:  448 LVDVETTGLQAKQGRVIQLAAKVLGSEDPGHSFAEYIDPGTVGVPAKVREITGITPEILAANGARPFPEVWPKFAEWLSGVVAEEQGQGRGESGVVFVAHNAQFDYRFLKEELSRCGFSRFMMGQDMGVVSVVDSLKCLKEDSLWRQRASDFNMPTRPNTFKLGGVFEHLYGYEMPGAHDALGDVVGLERIL 1023
            ++D+ETTG   K GR+ ++A  V   E     F   I+P  V +P  +  +TGIT E++A           P+F E ++G + EE  +GR     +FVAHN  FDY+F++EE SR G+                         L   + S   +P   + + LG + E L G E+   H A GD +   R+ 
Sbjct:    4 IIDIETTGTVYKYGRITEIALYVHNGERVTEQFQTLINP-EVDIPLYITRMTGITNEMVATA---------PRFYE-IAGKL-EELTEGR-----IFVAHNVNFDYQFIREEFSRIGY-------------------IFNRKKLCTVQLSRKFLPGHAS-YSLGRLCEEL-GIELNDRHRASGDALATVRLF 157          
BLAST of mRNA_E-fasciculatus_F_contig12922.2214.1 vs. uniprot
Match: UPI001EE81B9F (exonuclease domain-containing protein n=1 Tax=Lewinella maritima TaxID=1383882 RepID=UPI001EE81B9F)

HSP 1 Score: 73.2 bits (178), Expect = 1.360e-10
Identity = 57/194 (29.38%), Postives = 88/194 (45.36%), Query Frame = 1
Query:  448 LVDVETTGLQAKQGRVIQLAAKVLGSEDPGHSFAEYIDPGTVGVPAKVREITGITPEILAANGARPFPEVWPKFAEWLSGVVAEEQGQGRGESGVVFVAHNAQFDYRFLKEELSRCG--FSRFMMGQDMGVVSVVDSLKCLKEDSLWRQRASDFNMPTRPNTFKLGGVFEHLYGYEMPGAHDALGDVVGLERIL 1023
            +VD+ETTG +A + R+ ++   V   E    +F   +DP    +PA + E+TGIT E++            PKF E    +V   +G+       +FVAHNA+FDY FL+EE  R G  FSR  +       +V  + KC                     ++ LG + +H +G+ +   H AL D      +L
Sbjct:    8 IVDIETTGSRASRARITEIGIVVFDGEKVTETFETLLDPEQY-IPAGIVELTGITQEMVKGK---------PKFYEVAKRIVELTEGR-------IFVAHNAKFDYGFLREEFGRLGYTFSRRKL------CTVRLTRKCFPG----------------LKSYSLGKLIQH-FGFTVEARHRALADAQATTELL 161          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12922.2214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXY9_9PHAE8.080e-15678.71ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus... [more]
D7FPN7_ECTSI1.300e-15377.05ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus... [more]
A0A7S1Z4X3_9STRA6.140e-2533.03Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S3UQS9_HETAK1.930e-2342.60Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6U4I7J2_9STRA8.880e-1932.64Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3RKQ1_EMIHU3.330e-1334.65Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A2G0CGV1_9BACT2.360e-1130.21DNA polymerase III subunit epsilon n=5 Tax=Lewinel... [more]
A0A7C1WBY2_9PROT6.690e-1135.35DNA-directed DNA polymerase n=1 Tax=Proteobacteria... [more]
A0A1V5MS93_9BACT1.170e-1030.21DNA polymerase III PolC-type n=1 Tax=Bacteroidetes... [more]
UPI001EE81B9F1.360e-1029.38exonuclease domain-containing protein n=1 Tax=Lewi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12922contigE-fasciculatus_F_contig12922:6..3343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score467.2
Seed ortholog evalue6.6e-129
Seed eggNOG ortholog2880.D7FPN7
Preferred nameTREX2
KEGG rclassRC02795
KEGG koko:K02335,ko:K03655,ko:K10790,ko:K10791,ko:K10900,ko:K10905
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,ko03460,ko04623,map00230,map00240,map01100,map03030,map03410,map03420,map03440,map03460,map04623
GOsGO:0000002,GO:0000166,GO:0000266,GO:0000287,GO:0000738,GO:0001817,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005730,GO:0005737,GO:0005739,GO:0005783,GO:0005789,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006281,GO:0006298,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007005,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008296,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010033,GO:0010501,GO:0012505,GO:0016020,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017076,GO:0017111,GO:0019439,GO:0030554,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032404,GO:0032405,GO:0032407,GO:0032479,GO:0032552,GO:0032554,GO:0032558,GO:0033554,GO:0033955,GO:0034097,GO:0034641,GO:0034645,GO:0034655,GO:0035456,GO:0035458,GO:0036094,GO:0042175,GO:0042221,GO:0042623,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0046483,GO:0046700,GO:0046872,GO:0046983,GO:0048285,GO:0050789,GO:0050896,GO:0051239,GO:0051716,GO:0065007,GO:0070013,GO:0070035,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0097159,GO:0097367,GO:0098827,GO:0140097,GO:0140098,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901576
EggNOG free text desc.exodeoxyribonuclease III activity
EggNOG OGsCOG0847@1,KOG0344@1,KOG0344@2759,KOG4793@2759
Ec32 ortholog descriptionDEAD/DEAH box helicase domain
Ec32 orthologEc-16_001290.2
EC2.7.7.7,3.1.11.2,3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons5
Model size1050
Cds size1050
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12922.2214.1prot_E-fasciculatus_F_contig12922.2214.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12922 6..3343 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927796.448655-CDS-E-fasciculatus_F_contig12922:5..5181622927796.448655-CDS-E-fasciculatus_F_contig12922:5..518Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12922 6..518 +
1695995698.7730289-CDS-E-fasciculatus_F_contig12922:5..5181695995698.7730289-CDS-E-fasciculatus_F_contig12922:5..518Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12922 6..518 +
1622927796.4671452-CDS-E-fasciculatus_F_contig12922:1135..12171622927796.4671452-CDS-E-fasciculatus_F_contig12922:1135..1217Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12922 1136..1217 +
1695995698.7843924-CDS-E-fasciculatus_F_contig12922:1135..12171695995698.7843924-CDS-E-fasciculatus_F_contig12922:1135..1217Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12922 1136..1217 +
1622927796.4827495-CDS-E-fasciculatus_F_contig12922:1888..20991622927796.4827495-CDS-E-fasciculatus_F_contig12922:1888..2099Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12922 1889..2099 +
1695995698.7955813-CDS-E-fasciculatus_F_contig12922:1888..20991695995698.7955813-CDS-E-fasciculatus_F_contig12922:1888..2099Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12922 1889..2099 +
1622927796.4973593-CDS-E-fasciculatus_F_contig12922:2590..27241622927796.4973593-CDS-E-fasciculatus_F_contig12922:2590..2724Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12922 2591..2724 +
1695995698.8054464-CDS-E-fasciculatus_F_contig12922:2590..27241695995698.8054464-CDS-E-fasciculatus_F_contig12922:2590..2724Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12922 2591..2724 +
1622927796.5115626-CDS-E-fasciculatus_F_contig12922:3233..33431622927796.5115626-CDS-E-fasciculatus_F_contig12922:3233..3343Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12922 3234..3343 +
1695995698.8145819-CDS-E-fasciculatus_F_contig12922:3233..33431695995698.8145819-CDS-E-fasciculatus_F_contig12922:3233..3343Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12922 3234..3343 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12922.2214.1

>prot_E-fasciculatus_F_contig12922.2214.1 ID=prot_E-fasciculatus_F_contig12922.2214.1|Name=mRNA_E-fasciculatus_F_contig12922.2214.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=350bp
PLAASSPPTDGVVARAEATGGVSGSPTKTAPDGGKELGLEVPVPAAAAAV
YFDDEADFLEKSASEYAEMMRDQDEEDEYLSGFSFAPPPPPPSQAARRQR
QQQQQHERRPSGGVASAGSPVESGSSTPSGAGVAIIPRANLSEGSHTLVL
VDVETTGLQAKQGRVIQLAAKVLGSEDPGHSFAEYIDPGTVGVPAKVREI
TGITPEILAANGARPFPEVWPKFAEWLSGVVAEEQGQGRGESGVVFVAHN
AQFDYRFLKEELSRCGFSRFMMGQDMGVVSVVDSLKCLKEDSLWRQRASD
FNMPTRPNTFKLGGVFEHLYGYEMPGAHDALGDVVGLERILSAPGIKERW
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mRNA from alignment at E-fasciculatus_F_contig12922:6..3343+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12922.2214.1 ID=mRNA_E-fasciculatus_F_contig12922.2214.1|Name=mRNA_E-fasciculatus_F_contig12922.2214.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3338bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12922:6..3343+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCCTGGCGGCATCCTCCCCCCCCACCGACGGCGTAGTAGCCAGAGCGGA GGCGACCGGCGGCGTGTCCGGCTCGCCGACGAAGACGGCCCCGGATGGTG GCAAAGAACTGGGGCTTGAGGTGCCGGTGCCGGCGGCGGCGGCGGCGGTG TACTTCGACGACGAGGCGGACTTCTTGGAGAAGTCAGCCTCGGAGTACGC GGAGATGATGAGGGACCAGGACGAGGAAGACGAGTACCTGTCGGGGTTCT CTTTCGCGCCGCCGCCGCCGCCGCCTTCGCAGGCGGCCAGGCGGCAGCGG CAGCAGCAGCAGCAGCACGAAAGAAGGCCGTCGGGAGGGGTGGCGTCAGC GGGATCGCCGGTCGAAAGCGGCAGCAGCACACCGAGCGGGGCGGGTGTGG CGATCATACCCCGGGCGAACTTGTCGGAGGGCTCGCACACGCTTGTCTTG GTCGATGTCGAGACGACGGGTCTGCAGGCGAAACAAGGCCGCGTCATTCA GCTCGCGGCGAAGGTGCGTAGAGCGCGCGTTGTGTCGAAGCAGCTCTTTC GCTGCGGTATTGCACACTCTTTGCCATGAAAAAAGGGGAGGTGTAGGTAT CGAGCGAGCGCATCGTGGTCGATTCAGTGGCTCCATGCTTGCACAAAGCC CGCAGCGCTTGTTTCTCGAACAATACCCACGGAATTCCCTAGGCCGCCGT GGTTCTTGGGCGAGGAAGACCGATAGTTATAACCGAACGCCGATAGCAGC CCTAAGGCCGTCAGAGCCACCCTCGTCTCAAAACAAAAAGCACGAACCAG GCGCGCGTACGCACACAGCTATAGGCACGACGCTGTTGCGACTTGTCAAG CGTAGCCAACCGACGTGTTCCGCTCCAGACGTCCAGCTTGGTTATGTGAT GTGACCAAGCTCAGCACTTGATCAAGCTCAATGCTGCGTATCATACCATC CACCTGGATATTGTTTCCTCTCACCCCTTTGTTTCCTCTAACCCCTGTGA ATCCTGGGAGTGTCCTTCGCCGTGGTGTTTTCTTGGCCGACAACCTGAAC GTATGCATTCCGTCTGGGCGTCAACCAACCCCCGCCCCGGCGCCTGCCCC CCCGCCCGGCCACCTGTCTGTCCGTTGCAGGTTTTGGGCAGCGAGGATCC TGGGCACTCGTTCGCGGAATACATCGACCCAGGGACAGTGGGAGTGCCTG CCAAAGTCCGAGGTACGCCCTGCCGTGACATATTTTGGTGGTGTTGCCTG TCGCTGTGTAGGGTACGATTGTGCGGTCTGCTTCTGGCGTGGGTGGTGGT GGCACGCTCTCCTTGCCACGGACTACAAGCCCAAAGAAGGAGTATTGACA TGTTTTCGGCGAAATACAGTAGTGACGGGGCCTCCCGTCGTCGCTGGAGC TGCGCGGTGCAACGCCGAACGGGCGGCTGCGTAGCAGGCGGGAGCAAAGC ACGCGCCAGCTTGCTTTCTCTCGCGAGGGTCCTGTCTTGCAGGAAAGAGC ACGCACACGGCAGCTTGCTCTCCGTGGTGGTAAGCATTCTGTCTGCGGCA GCACCTCACGGCATGCTCTCGACGCCGCTTGTTTCTGTGTTCCGTACCGC AAAATCTCCGTTTATGGTAAACGTTATTGTCTATCTCACGGCATGCCGTC GACGACGCGTGTTTCTGTCATCCATGCCCCAAAATCTAGAGTTACTGTCT GCAGTACCTCACGGCATGCCCTCGACGACGCGTGTTTTTGTGTTGCGTGC AGCGAAACCTCGTTACGGTCTCTACCTCACCGCAAAACCTCCGTTTTTTG GCAAGCGTTACTGTCTGCCTCACCGCATGCCCACAACGATGCGTGTTCCT AAAACGGGAAAAAAAACGTGTGTCGTTGCGCAGAGATTACCGGCATCACG CCCGAGATCCTGGCCGCCAACGGCGCGCGACCGTTCCCCGAGGTGTGGCC GAAGTTCGCCGAGTGGCTGTCGGGGGTCGTGGCCGAAGAGCAAGGGCAGG GCAGGGGCGAGAGCGGCGTCGTGTTCGTCGCTCACAACGCCCAGTTCGAC TACAGGTTCCTAAAGGAGGAGCTGTCGCGATGCGGCTTCAGCAGGTGTGA TGGTCGGTTTTGGGGGCTGCTGGGCTATGTTGGTTGGGTTGAAGGTCATT CGTACGGCGTCGGATATGGTGTTTCGGTGTCGTGCGGTCAGGCTGACAGC CAGCGGAAAAGTCCTATCTTCTTTAGTCATTGGTCGACCACGACGATTGC GCTCGGCAGGCCATCGAGTGCTGTTTACTTTTTTAGAAAATATACATTTT CACACAGAAAAAGTACCCATGCGAAATAATACCACAGTCGAAGAGGATGT GTTAAAGTCTTGACAGTAGTGAGTGGGAAGAAAACCAGCTGGGTACTGTG CTTATGTAGTTTCTTTTTTTGTGTGTAGCGGTCTCCATGCATGTACTAAA AACCATTTTGTCCTCGAGTTCCTTCGCCCCTTGCGTGAACCGGGTGAGTC CGTCGTGTGTGTTTGCACTCTTCCTATTCTCGTTTGTTGCTAGTAAGAAC GCCCTCTTCTGTTGTTTTGCTTGGCCGCCTGGAAGGTTCATGATGGGCCA GGATATGGGAGTGGTGTCCGTCGTTGACTCCCTCAAGTGCCTGAAGGAGG ACAGCTTGTGGAGGCAAAGAGCCTCTGATTTTAACATGCCGACGAGGCCC AACACCTTCAAGCTCGGGGGTGAGAGAAACGAACAGGGTAGTGGGGACGT GGTTGCGGTGTGCGATAGTTTGGGGGTTGATTGTAGTAGTTGCGTCACGG CTTGTCCTGGTTCTTTCGACCCAGCCCCCTTCAAACCGTACTATACAGCT ATGCTTGCAAGCGCAGTCTAGACAAGTCTTGTGGTTGGCATATAACGTGC CCGAGCAGGCAAGTAGGCGGTGACCACGCACACATTGACACGACCCGACT AGGCCGCCGTCCCCAGTCGACTAGGGATTGCTGTAGGGAAGAGGCGTTGG GTGTGGGACTTGAGTTTCCTGGGCCTGTAGCGCAGGTGATGTGACTGGTG TTTTGTCCAACACAATCCTGATTATGTGCTCGAAGGGTTGAGACATTGTT TTCTTCTACAAGTACATCAGCACGGAATTTTTCGCGCGTACAGTACTGAC ACCACATCGCCCTCTGTCCATTTGCTTTTCTCTTCTTCACCCGGCCACTT TTCCCTGTGACCACGCCTCCGCTCTCAGGGGTGTTCGAGCACCTGTACGG CTACGAAATGCCCGGCGCGCACGACGCGCTGGGCGACGTCGTTGGACTAG AACGCATCCTGTCGGCGCCGGGCATCAAAGAGCGGTGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12922:6..3343+

>mRNA_E-fasciculatus_F_contig12922.2214.1 ID=mRNA_E-fasciculatus_F_contig12922.2214.1|Name=mRNA_E-fasciculatus_F_contig12922.2214.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2100bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12922:6..3343+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCCTGGCGGCATCCTCCCCCCCCACCGACGGCGTAGTAGCCAGAGCGGA
GGCGACCGGCGGCGTGTCCGGCTCGCCGACGAAGACGGCCCCGGATGGTG
GCAAAGAACTGGGGCTTGAGGTGCCGGTGCCGGCGGCGGCGGCGGCGGTG
TACTTCGACGACGAGGCGGACTTCTTGGAGAAGTCAGCCTCGGAGTACGC
GGAGATGATGAGGGACCAGGACGAGGAAGACGAGTACCTGTCGGGGTTCT
CTTTCGCGCCGCCGCCGCCGCCGCCTTCGCAGGCGGCCAGGCGGCAGCGG
CAGCAGCAGCAGCAGCACGAAAGAAGGCCGTCGGGAGGGGTGGCGTCAGC
GGGATCGCCGGTCGAAAGCGGCAGCAGCACACCGAGCGGGGCGGGTGTGG
CGATCATACCCCGGGCGAACTTGTCGGAGGGCTCGCACACGCTTGTCTTG
GTCGATGTCGAGACGACGGGTCTGCAGGCGAAACAAGGCCGCGTCATTCA
GCTCGCGGCGAAGCCCCTGGCGGCATCCTCCCCCCCCACCGACGGCGTAG
TAGCCAGAGCGGAGGCGACCGGCGGCGTGTCCGGCTCGCCGACGAAGACG
GCCCCGGATGGTGGCAAAGAACTGGGGCTTGAGGTGCCGGTGCCGGCGGC
GGCGGCGGCGGTGTACTTCGACGACGAGGCGGACTTCTTGGAGAAGTCAG
CCTCGGAGTACGCGGAGATGATGAGGGACCAGGACGAGGAAGACGAGTAC
CTGTCGGGGTTCTCTTTCGCGCCGCCGCCGCCGCCGCCTTCGCAGGCGGC
CAGGCGGCAGCGGCAGCAGCAGCAGCAGCACGAAAGAAGGCCGTCGGGAG
GGGTGGCGTCAGCGGGATCGCCGGTCGAAAGCGGCAGCAGCACACCGAGC
GGGGCGGGTGTGGCGATCATACCCCGGGCGAACTTGTCGGAGGGCTCGCA
CACGCTTGTCTTGGTCGATGTCGAGACGACGGGTCTGCAGGCGAAACAAG
GCCGCGTCATTCAGCTCGCGGCGAAGGTTTTGGGCAGCGAGGATCCTGGG
CACTCGTTCGCGGAATACATCGACCCAGGGACAGTGGGAGTGCCTGCCAA
AGTCCGAGGTTTTGGGCAGCGAGGATCCTGGGCACTCGTTCGCGGAATAC
ATCGACCCAGGGACAGTGGGAGTGCCTGCCAAAGTCCGAGAGATTACCGG
CATCACGCCCGAGATCCTGGCCGCCAACGGCGCGCGACCGTTCCCCGAGG
TGTGGCCGAAGTTCGCCGAGTGGCTGTCGGGGGTCGTGGCCGAAGAGCAA
GGGCAGGGCAGGGGCGAGAGCGGCGTCGTGTTCGTCGCTCACAACGCCCA
GTTCGACTACAGGTTCCTAAAGGAGGAGCTGTCGCGATGCGGCTTCAGCA
GAGATTACCGGCATCACGCCCGAGATCCTGGCCGCCAACGGCGCGCGACC
GTTCCCCGAGGTGTGGCCGAAGTTCGCCGAGTGGCTGTCGGGGGTCGTGG
CCGAAGAGCAAGGGCAGGGCAGGGGCGAGAGCGGCGTCGTGTTCGTCGCT
CACAACGCCCAGTTCGACTACAGGTTCCTAAAGGAGGAGCTGTCGCGATG
CGGCTTCAGCAGGTTCATGATGGGCCAGGATATGGGAGTGGTGTCCGTCG
TTGACTCCCTCAAGTGCCTGAAGGAGGACAGCTTGTGGAGGCAAAGAGCC
TCTGATTTTAACATGCCGACGAGGCCCAACACCTTCAAGCTCGGGGGTTC
ATGATGGGCCAGGATATGGGAGTGGTGTCCGTCGTTGACTCCCTCAAGTG
CCTGAAGGAGGACAGCTTGTGGAGGCAAAGAGCCTCTGATTTTAACATGC
CGACGAGGCCCAACACCTTCAAGCTCGGGGGGGTGTTCGAGCACCTGTAC
GGCTACGAAATGCCCGGCGCGCACGACGCGCTGGGCGACGTCGTTGGACT
AGAACGCATCCTGTCGGCGCCGGGCATCAAAGAGCGGTGGGGGTGTTCGA
GCACCTGTACGGCTACGAAATGCCCGGCGCGCACGACGCGCTGGGCGACG
TCGTTGGACTAGAACGCATCCTGTCGGCGCCGGGCATCAAAGAGCGGTGG
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