mRNA_E-fasciculatus_F_contig1292.2211.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1292.2211.1
Unique NamemRNA_E-fasciculatus_F_contig1292.2211.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1292.2211.1 vs. uniprot
Match: D7G453_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G453_ECTSI)

HSP 1 Score: 363 bits (932), Expect = 1.520e-122
Identity = 192/210 (91.43%), Postives = 198/210 (94.29%), Query Frame = 1 
Query:    1 MRIAVAALGLGLASIIPEGTVDGFVVTAGRVVDGVPSSRSDYLHRAGVVGDRSRLDLSCLSGRNPVSTLSRNGGAGQTSNAGATATALCARPGRGAEEGGQEEGPSSAAAMSGVGSVGSNVLLIVASVMVVKGLLLPENVRHLGFCPTEDPVRGRDTLPWRMMIESGRECGTIPEVMTKYVTAPLAFPGTPEWGMMLNTKEDLAKDAWLQ 630
            MRIAVAALGLGLAS+IP GTVDGFVV AGRVVD VPSSRSD LHRAGV+GDRSRL LS LS RNPVSTLSR+GGA QTS AG TATAL AR GRGAEEGGQE+GPSSAAAMSGVGSVGSNVLL+VASVMVVKGLLLPENVRHLGFCPTEDP+RGRDTLPWRMMIESGRECGTIPEVMTKYVTAPLAFPGTPEWGMMLNTKEDLAKDAWLQ
Sbjct:    1 MRIAVAALGLGLASVIP-GTVDGFVVPAGRVVDVVPSSRSDSLHRAGVMGDRSRLGLSGLSERNPVSTLSRDGGARQTSTAGVTATALSARAGRGAEEGGQEDGPSSAAAMSGVGSVGSNVLLLVASVMVVKGLLLPENVRHLGFCPTEDPIRGRDTLPWRMMIESGRECGTIPEVMTKYVTAPLAFPGTPEWGMMLNTKEDLAKDAWLQ 209
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1292.2211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G453_ECTSI1.520e-12291.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1292contigE-fasciculatus_F_contig1292:4986..9978 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_002210.1
Exons5
Model size1298
Cds size633
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1292.2211.1prot_E-fasciculatus_F_contig1292.2211.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1292 5651..9978 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927795.8989773-UTR-E-fasciculatus_F_contig1292:4985..56501622927795.8989773-UTR-E-fasciculatus_F_contig1292:4985..5650Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1292 4986..5650 -
1695995698.542505-UTR-E-fasciculatus_F_contig1292:4985..56501695995698.542505-UTR-E-fasciculatus_F_contig1292:4985..5650Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1292 4986..5650 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927795.914221-CDS-E-fasciculatus_F_contig1292:5650..57581622927795.914221-CDS-E-fasciculatus_F_contig1292:5650..5758Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1292 5651..5758 -
1695995698.5504184-CDS-E-fasciculatus_F_contig1292:5650..57581695995698.5504184-CDS-E-fasciculatus_F_contig1292:5650..5758Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1292 5651..5758 -
1622927795.9303815-CDS-E-fasciculatus_F_contig1292:6483..65861622927795.9303815-CDS-E-fasciculatus_F_contig1292:6483..6586Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1292 6484..6586 -
1695995698.558313-CDS-E-fasciculatus_F_contig1292:6483..65861695995698.558313-CDS-E-fasciculatus_F_contig1292:6483..6586Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1292 6484..6586 -
1622927795.945652-CDS-E-fasciculatus_F_contig1292:7020..72661622927795.945652-CDS-E-fasciculatus_F_contig1292:7020..7266Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1292 7021..7266 -
1695995698.566344-CDS-E-fasciculatus_F_contig1292:7020..72661695995698.566344-CDS-E-fasciculatus_F_contig1292:7020..7266Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1292 7021..7266 -
1622927795.9632685-CDS-E-fasciculatus_F_contig1292:8050..81741622927795.9632685-CDS-E-fasciculatus_F_contig1292:8050..8174Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1292 8051..8174 -
1695995698.5743678-CDS-E-fasciculatus_F_contig1292:8050..81741695995698.5743678-CDS-E-fasciculatus_F_contig1292:8050..8174Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1292 8051..8174 -
1622927795.9763563-CDS-E-fasciculatus_F_contig1292:9926..99781622927795.9763563-CDS-E-fasciculatus_F_contig1292:9926..9978Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1292 9927..9978 -
1695995698.582301-CDS-E-fasciculatus_F_contig1292:9926..99781695995698.582301-CDS-E-fasciculatus_F_contig1292:9926..9978Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1292 9927..9978 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1292.2211.1

>prot_E-fasciculatus_F_contig1292.2211.1 ID=prot_E-fasciculatus_F_contig1292.2211.1|Name=mRNA_E-fasciculatus_F_contig1292.2211.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=211bp
MRIAVAALGLGLASIIPEGTVDGFVVTAGRVVDGVPSSRSDYLHRAGVVG
DRSRLDLSCLSGRNPVSTLSRNGGAGQTSNAGATATALCARPGRGAEEGG
QEEGPSSAAAMSGVGSVGSNVLLIVASVMVVKGLLLPENVRHLGFCPTED
PVRGRDTLPWRMMIESGRECGTIPEVMTKYVTAPLAFPGTPEWGMMLNTK
EDLAKDAWLQ*
back to top

mRNA from alignment at E-fasciculatus_F_contig1292:4986..9978-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1292.2211.1 ID=mRNA_E-fasciculatus_F_contig1292.2211.1|Name=mRNA_E-fasciculatus_F_contig1292.2211.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4993bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1292:4986..9978- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGGATCGCCGTTGCTGCTCTCGGGCTGGGCCTAGCTTCAATTATCCC
AGGTTTGTTTGCGTTTCTTTGTTGAAGACACACCGCCGTTGCATGTGTCG
CGTCTACAGACAGCTACAGCAGTGTACGTTGTACACATCCACAATACGAA
ACTAGCGTGTAGCCGTGTGCGCTTTCCACCGACAGACTACGGGTAACGGA
GACCGCAATAGCTCTTGTACACACAGCTACAGTTGCAGGTTGATTACTCA
ATAACGGTGTTCCCGGGCGGAGGTTATACGGGTAGGTAGTACTGCCGTAG
ATGCATCTGCTGTACATACATGTAGACAGACTACGCTAGCAGCAGCATTT
TCTACATAGACAAGAGGTGTTTCAGTGTGGGAGTCGCGGAGGGTACTACA
GTAGGTGGCGTAGTGATCTAGCTAGCAGCGCCATCTGGCGCATGATCGTG
CATCAGGGAAGGGGGCCGCTGCTGATGTGCAAACCCTACCGTAATGAACA
TGACTCTACGTAAACCTTCTCAACTTCTGATGCTTTCGGTCCGTCGTGCC
ATAAGACATAGTCTAAGACTGTACTTGTATTTCCATTTACCTGTGGCTCG
CAGTCATGAAGTAATACTGCTGTACGGTCTTGCCGACCTCACTGATTGTC
TCCGATCCGGAGTTACACGTAGCTCCCTTTACTCTGTGCTGGATGCCTTC
ATTGTACAACGCGTGAAGGGTGCAGCACTGTCCTCCTCAAGGGCTTTTCT
GATACGCCGCTGGGATCCGACCTTTCGATCTCTCCCAACAGCAGTGGTTT
CAAAGTTAAGCATCTAGACCAATCAAGTGGCTCTTGCAGAATCTTGTAGA
TCTTGGTCGTAGTTACGACGCTGCGCGTTGCATTTCTCTGTAACATGTTT
GTATTGGCTTGTATTTTTGTATGGAACGTCGTGTCTTCGGGTTTGAAGAG
TGGAGAAGAAGGGAGGAAAATTGACTGGGGTCAGGACAAATATTGGTTTA
CAACCAACGACAAGATAACTCAGCAGAGACTCAAAGGACAATATCGTTGT
TCACCTCAAGGTGGAAATAGATTCAATCGAAAACACAGCGCACGTGGGGT
GATCGCGATGCTGTCCCTGGTGCGCCCTCGTGGGCGGCGGCCAGCGGTTG
CGGTAGGCAGAAACGCTCATCCTACTCCGTGTTCACCCGTGACAAAATAG
CTTAGGTGTGACCGCAGCCGGCCACAGGCTGCAGCATACACAAACGGAGT
GAATGCCCACATCTCGTGGCCCAAAAAAAATGCGAAGGACGCCATCTGCA
GAGAACAGCATGGGTTCATGAAGGGACATGTGCAGGTCTCCATTGCCGTA
GTTTTAGCCGCAGTGGTAACGAGCAACTACAGCAGTGCACTGCATGACGT
ATGGTAGGTAGGACCAATGGTGGTTCATGATTGAATAAATGCCAACGATC
CACCTTCTCGGTAGAAGCGTTTGTTGGTATTTTAGTTTGTAGACATGGCC
TTCATTTTGTTTGTGTCAGCACGGCAGGGACAGAGTGGCGCCATGTCCTG
GAACTATTCCCGTTGCAGTACCTGCGATGCTGCCGTTGCTGCCGCCGCCG
CCACGCACGCCACGCCTCTTCCGTCCAGCAAGACTTCACGCCTCCGTAAC
TGCTGTAGGCTTACCGGTCGCGGAAGCTTGATTGGTCCATCCAGACTTGA
TCTACCATCAGGGATGCCAGGCCGCAAACCTGCCTCTCGTAGAATACTGC
CGTGTTTTTGAACGATCCTCCTTGTGTTTGTTCCCTTGTCCCACTCCGTC
CAAGAAGGTACAGTTGACGGGTTCGTTGTTACTGCTGGGAGAGTCGTCGA
TGGGGTCCCTTCCTCGAGAAGCGATTATCTACACCGCGCCGGAGTCGTGG
GCGACCGGAGCCGGTTGGACCTTAGCTGGTACGCGAGACGGCCTTCGAAG
TGCTTTCATGCTATCCCAGCCGCCGGTGCACTTGTGCCTTCATCGCTGTC
GCGGATTCTTTGACGAATCTTGACTACTGTTTTACGTTTTGATGTAGCCC
TCGCTTTGCGATGTGTGCGAATTGAGGGGGCATTGATGATGCTACCTCCG
TTTGTTCCCCCTCGCGAGCTTTGTACGGAAACCGGAGTGCGGGCATCGAG
GATCGATTTGCGATAGATACATTGCCCCGATGCTCACCGATCCGTCGGTC
GGTCGGCCTTCTTTCAGAACCCCAACCATTATTGTGCGCAATACAGGAGC
GAGGCACGAGTACCAGGATAAGTAGTTAGCCGTGTCCAGCACCTTGTGAT
GTGATGTTTTCATCCAGAGGACAATCAAACGCCAGAGAAGACGGCGTTGT
CCGTAAAGATTGGCCAGTGCGCTCATCCCCGGTGCAAACCTGACGAACGC
AGAAGATGCTTGTCGATCAGTCGTAACTGGTGTTGTGCGTTGTGCAGCAT
CATCGCGTTGGGACCGTCCTGCCAATAGCCTATCGAATCATTGCCGGTGG
CTGTCCATATCTAGGAGTGGACTCAAAACTTCAACTCAAGAGTTCGAGAA
TGCAACTATTCATTTCCTTTCTCACGACACTCCTCCTCTGAAACACGTAC
CGTGCTGTTCTGGAGGAGTTCTGCGAGCGTGGTTGTACCTGTTGGCGACG
ACGTTGTTGGTCTTGCTCCTACTGTAGTATCTGCGCACCCTCCCTTACGT
TTGCTATTCCAGTTTGAGCGGAAGGAACCCGGTCTCGACCCTCAGCCGCA
ACGGTGGGGCTGGCCAAACGTCCAACGCTGGTGCCACCGCAACAGCGTTG
TGCGCAAGGCCGGGGCGCGGAGCAGAAGAGGGGGGGCAGGAGGAGGGGCC
ATCTTCCGCTGCTGCCATGAGTGGGGTCGGGAGCGTCGGAAGCAACGTGC
TGCTTATTGTGGCGTCCGTGATGGTGGTAAAGGGTCTCCTCTTGCCCGAG
AATGTTCGGTGAGAGGCACATGCAGACAAAGGGGGCGTCAGAGCAGGGGG
TGCGGGGTGGTATGAAGCAAGCAAGAGAAAACGGAGAACGACCAGCAGCA
GCAGAGGGAAAGATAGCAGCTACAAATATTATGTATGTCTCTAGACCGAA
CCAGGAAAGCAACAGGTCGCATTCAGTTGTTTGAACCTAGATTCGAGGTG
CAGCGTACAGGACAGATTGCCTTTGAGCCTCGGTTTTACGTTGGTTTTCG
GTCGTCTTCCGTCAATCTCGCACTTCCGCTGTCTCGTGCTCGTCTTGGGT
TCCGAAAGTGCTGAACTCATGCCCAGGTCGTATGCAATATATTGGTGTCG
TCACCACATACTTTCCCTTCCACCTCGCCGACTTCCTCCTTTCTTGCAAC
TTCTTCTTTGTGCATACTTTGACTTTTCGCCAAATGTTCTAGGCACCTGG
GCTTTTGTCCGACGGAAGACCCTGTCAGGGGAAGGGACACCCTGCCGTGG
AGGATGATGATTGAGTCTGGCAGAGAGTGCGGCACCATCCCGGAGGTGCG
TTGCGGCGAGGGTACTCGAATGTGGCAGCCTGAGAAAAAGGAAGGATTCG
CGTCTTCTTGGGCATATGCGTAGAACTCGAGGATTCGTAAAGAATTTGAC
GTCGAGGGTAAAGGCGGTTTACTTCCTGTTGAGGCGTGGTGCCGCGGTTT
GAATTTCCATTATCATCGGCATAATGTAATCTCGATCGAGGCTTAGTCTA
AGAGCAGTGTCTGCTCTCATAATGATTAAGGCGGAAAACTGAGACAGCAT
GGCTGTGTGCCATCCACTCACGACCATTCCCTTGAGTGAAGATCGGAGTG
GTGGTTCAATGTTTTGTTGAAAGGCGATATCGTACGCCTATAAGTCGGCG
ATTATGCTTTGGGCTCAGTGCATCAACTTGCAGCAGAGATTTCCATTAGC
CAGGATGGCGAGAGTGTGGAGCGATGCCTAGATTACTAAATACGCACCTT
GAGTTTAGTTCTGCTTCGTCCGACGCTTCCGTGCCCCGAGGCCCCCAGTC
GGAACCGCCTATAGGTCAATCGCTTGGTCACCACGAAACAGATATCTGTG
GGCCTGCTACTCCTGATCTGCACTTGATGCCACTCACTTCACATGATGGC
CACTCTACACACGAAGTTTATGACGTGATAGCTTCGCGTGCATCGACGTC
CTCCGGGCGTGTTCGCTCGCCGTCGTTTCCTGTTCGTTGGGTTGTTCATG
TTGCCTATTCTCTCTTTTAGGTGATGACCAAGTACGTCACTGCTCCGCTC
GCGTTCCCGGGCACGCCTGAGTGGGGCATGATGCTCAACACCAAAGAAGA
TCTTGCCAAGGATGCATGGCTGCAGTAAGATGTTATGATGCCACCCGGTG
TGTGCTCCATTGCTCCTGCCGACATCCCTTGCCCCTTCTGCGAAAACCTG
CCGGATGGAGACGCCTCAATTAATGTCGGAACGCGAGTACTCTGCTTGGG
CTACTTTACGCCATCATGGATTGCCCCTTCTGGGGTTGTGACATCGTCGA
AACAGGGAGCACCTTGAGCTTCGAAAGACCGGCGGCTGTTGAGTTGTTTA
CGCCGATGGTGTTGAGGTGGAGATGAAGCGTCTACAACAGTACGTCATAG
AATTTCATGACGATGTCGAGAGAGCGGTAACCAGTGTGTGCCAATTAGAT
TGCGCTGCAGCACACAGGACGTTTCAGGAGCCTAAACTTGAGATGGCGGT
GCGCGTACCCATCAGCGTCCATCTTCTTGTCTGCTTCTTGTGTGTGAATC
ACACTCCAGTATCTGTGCAGGAATGAATCGGCAATGGTCTTCTCCCCTCA
GCCGTGTTCCTGCGCCTGAAACGTTAAACTGTGGCAAAAACAATGAGGTC
ATTGCGGGGTTCTGACGGAATGCTGAGGAACAGCATGCAGGGGAAAAACA
TGGCGGTGTTCCGACCATTCTATTATGCAATTTTTGCAGGCCCACCTATG
CGCAGCCAGCCTTGTGTAACCGAGATTTATAGGTGCAACCAGG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1292:4986..9978-

>mRNA_E-fasciculatus_F_contig1292.2211.1 ID=mRNA_E-fasciculatus_F_contig1292.2211.1|Name=mRNA_E-fasciculatus_F_contig1292.2211.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1266bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1292:4986..9978- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGGATCGCCGTTGCTGCTCTCGGGCTGGGCCTAGCTTCAATTATCCC
AGATGAGGATCGCCGTTGCTGCTCTCGGGCTGGGCCTAGCTTCAATTATC
CCAGAAGGTACAGTTGACGGGTTCGTTGTTACTGCTGGGAGAGTCGTCGA
TGGGGTCCCTTCCTCGAGAAGCGATTATCTACACCGCGCCGGAGTCGTGG
GCGACCGGAGCCGGTTGGACCTTAGCTGAAGGTACAGTTGACGGGTTCGT
TGTTACTGCTGGGAGAGTCGTCGATGGGGTCCCTTCCTCGAGAAGCGATT
ATCTACACCGCGCCGGAGTCGTGGGCGACCGGAGCCGGTTGGACCTTAGC
TGTTTGAGCGGAAGGAACCCGGTCTCGACCCTCAGCCGCAACGGTGGGGC
TGGCCAAACGTCCAACGCTGGTGCCACCGCAACAGCGTTGTGCGCAAGGC
CGGGGCGCGGAGCAGAAGAGGGGGGGCAGGAGGAGGGGCCATCTTCCGCT
GCTGCCATGAGTGGGGTCGGGAGCGTCGGAAGCAACGTGCTGCTTATTGT
GGCGTCCGTGATGGTGGTAAAGGGTCTCCTCTTGCCCGAGAATGTTCGTT
TGAGCGGAAGGAACCCGGTCTCGACCCTCAGCCGCAACGGTGGGGCTGGC
CAAACGTCCAACGCTGGTGCCACCGCAACAGCGTTGTGCGCAAGGCCGGG
GCGCGGAGCAGAAGAGGGGGGGCAGGAGGAGGGGCCATCTTCCGCTGCTG
CCATGAGTGGGGTCGGGAGCGTCGGAAGCAACGTGCTGCTTATTGTGGCG
TCCGTGATGGTGGTAAAGGGTCTCCTCTTGCCCGAGAATGTTCGGCACCT
GGGCTTTTGTCCGACGGAAGACCCTGTCAGGGGAAGGGACACCCTGCCGT
GGAGGATGATGATTGAGTCTGGCAGAGAGTGCGGCACCATCCCGGAGGCA
CCTGGGCTTTTGTCCGACGGAAGACCCTGTCAGGGGAAGGGACACCCTGC
CGTGGAGGATGATGATTGAGTCTGGCAGAGAGTGCGGCACCATCCCGGAG
GTGATGACCAAGTACGTCACTGCTCCGCTCGCGTTCCCGGGCACGCCTGA
GTGGGGCATGATGCTCAACACCAAAGAAGATCTTGCCAAGGATGCATGGC
TGCAGTAAGTGATGACCAAGTACGTCACTGCTCCGCTCGCGTTCCCGGGC
ACGCCTGAGTGGGGCATGATGCTCAACACCAAAGAAGATCTTGCCAAGGA
TGCATGGCTGCAGTAA
back to top