mRNA_E-fasciculatus_F_contig1292.2210.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1292.2210.1
Unique NamemRNA_E-fasciculatus_F_contig1292.2210.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1292.2210.1 vs. uniprot
Match: D7G4A9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4A9_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 5.590e-15
Identity = 39/54 (72.22%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    1 LWTANRDGR-HRHSGKGAGAPGVPGVLVNRLTLDDCFNPSVTDLRWPERLREIA 159
            LWTA+RD R  R S K AG PGVP VLV +LTL DCFNP VT +RWPERLREIA
Sbjct:   35 LWTASRDARGQRRSRKAAGVPGVPPVLVRQLTLSDCFNPKVTGMRWPERLREIA 88
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BLAST of mRNA_E-fasciculatus_F_contig1292.2210.1 vs. uniprot
Match: A0A6H5L639_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L639_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.070e-12
Identity = 38/56 (67.86%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 LWTANRDGRHR-HSGKGAGAPGVPGVLVNRLTLDDCFNPSVTDLRWPERLREIAFG 165
            LWTA+RD R +  S K AG PGVP VLV +L L DCFNP++T +RWPERLREIAFG
Sbjct:  150 LWTASRDARGQGRSRKVAGVPGVPPVLVRQLKLSDCFNPTLTGIRWPERLREIAFG 205
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BLAST of mRNA_E-fasciculatus_F_contig1292.2210.1 vs. uniprot
Match: D7G452_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G452_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.750e-11
Identity = 37/55 (67.27%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 LWTANRDGR-HRHSGKGAGAPGVPGVLVNRLTLDDCFNPSVTDLRWPERLREIAF 162
            L T +RD R  R S K AG PGVP V V +LTL DCFNP+VT +RWPERLREIAF
Sbjct:   17 LRTCSRDARGQRSSRKAAGVPGVPPVFVRQLTLSDCFNPTVTGMRWPERLREIAF 71
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1292.2210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G4A9_ECTSI5.590e-1572.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L639_9PHAE1.070e-1267.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G452_ECTSI1.750e-1167.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1292contigE-fasciculatus_F_contig1292:1491..2907 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFNIP
Ec32 orthologEc-02_002200.1
Exons2
Model size1131
Cds size1131
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927795.8238938-CDS-E-fasciculatus_F_contig1292:1490..19791622927795.8238938-CDS-E-fasciculatus_F_contig1292:1490..1979Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1292 1491..1979 -
1695995698.5263343-CDS-E-fasciculatus_F_contig1292:1490..19791695995698.5263343-CDS-E-fasciculatus_F_contig1292:1490..1979Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1292 1491..1979 -
1622927795.8394399-CDS-E-fasciculatus_F_contig1292:2265..29071622927795.8394399-CDS-E-fasciculatus_F_contig1292:2265..2907Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1292 2266..2907 -
1695995698.5342572-CDS-E-fasciculatus_F_contig1292:2265..29071695995698.5342572-CDS-E-fasciculatus_F_contig1292:2265..2907Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1292 2266..2907 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1292.2210.1prot_E-fasciculatus_F_contig1292.2210.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1292 1491..2907 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1292.2210.1

>prot_E-fasciculatus_F_contig1292.2210.1 ID=prot_E-fasciculatus_F_contig1292.2210.1|Name=mRNA_E-fasciculatus_F_contig1292.2210.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=377bp
LWTANRDGRHRHSGKGAGAPGVPGVLVNRLTLDDCFNPSVTDLRWPERLR
EIAFGKQFDRSLCGVQWPRMLASVRFGCSFDQPLGRVEFPDGLESLAFGC
GFNQPLAGVKLPRGLRSLWLGEAFDQPLDGVEFPDGLQTLSLGGVFDQPL
CGVKWPGGLERLALGREFNQPLGDVYWPQGVRQIAFSQQFDHPIESMAFP
SSVQWIEFGSNFNQDVGGVKWPADLEYLKFSCRFNKTLEHTKLPRGLAVL
KLCCMWDHSLARVDLPESLKLLRLSDGFDRPLDEVRFPPGLASLYLGDTF
DQPLNEVKWPANLKTLYLGDLFDYPLDNVEWPEGLESLFLGQSFSEDLDS
MDLPASMTIRIVGDSSEDCDVVEWPF*
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mRNA from alignment at E-fasciculatus_F_contig1292:1491..2907-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1292.2210.1 ID=mRNA_E-fasciculatus_F_contig1292.2210.1|Name=mRNA_E-fasciculatus_F_contig1292.2210.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1417bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1292:1491..2907- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGTGGACCGCAAACCGAGACGGACGTCATCGGCACAGCGGGAAAGGGGC
AGGAGCCCCCGGGGTACCTGGTGTGCTCGTCAACCGGCTGACTCTGGACG
ACTGCTTCAACCCATCAGTGACCGACCTGCGCTGGCCTGAACGGTTGAGA
GAGATTGCCTTCGGCAAACAATTCGACCGGAGCCTGTGCGGCGTTCAGTG
GCCACGGATGCTGGCGAGCGTCCGTTTCGGGTGCTCGTTCGACCAGCCGT
TGGGCAGAGTGGAGTTTCCGGACGGGTTGGAGAGCCTCGCCTTCGGGTGT
GGCTTCAATCAGCCCCTAGCTGGAGTGAAGCTTCCTCGCGGACTCCGGTC
GCTCTGGCTGGGCGAGGCCTTCGACCAGCCGCTGGACGGCGTGGAGTTTC
CCGATGGGCTGCAGACACTCTCTCTCGGCGGGGTGTTCGACCAGCCGTTG
TGTGGAGTGAAGTGGCCGGGGGGTCTCGAGAGACTGGCGTTGGGCAGAGA
GTTCAACCAGCCCCTCGGTGATGTGTACTGGCCTCAGGGTGTTCGACAGA
TCGCTTTCAGCCAACAGTTCGACCACCCAATCGAGTCGATGGCGTTCCCG
TCCTCTGTGCAATGGATAGAGTTCGGGTCTAACTTCAACCAGGTGTGTGT
TTCGAATGAGTTGAAGATTGTGAAAATGCTTGATACCGTGCATTTGTCTG
GAAATCGGTGTGACGTTCAGGGTGGGCTATATGTACTTCGGAAGAGCTTG
ATATGAAAGGGTTCATTCCTCAACGGTGCTCTCTACCTTTGCGCAAGTGA
TAGATTACCAACAGTTCGCTTTCACTGTGGCTGCGGCTGTGATCGTCTGT
TCAGCCGCCCCCCCGTCTCGCGTCGTTGTTGGCTCCTCCTTCTTCTCTTA
TGCGTCGTTTTCTTCCACCTACGTGCAGGATGTGGGTGGTGTCAAGTGGC
CCGCAGATCTCGAGTACCTCAAGTTCAGCTGCAGGTTCAACAAGACCTTG
GAGCACACAAAGCTTCCGCGAGGACTAGCTGTTCTGAAGTTGTGCTGCAT
GTGGGACCACTCTCTTGCTCGGGTAGACTTGCCCGAGTCTTTGAAACTCC
TGCGCCTGAGCGATGGTTTCGATCGGCCTCTAGACGAGGTTCGCTTTCCT
CCTGGCCTCGCCTCTCTTTACCTTGGCGACACCTTCGACCAGCCCCTGAA
CGAAGTGAAATGGCCGGCCAACCTGAAGACGTTGTACTTGGGAGATTTGT
TCGACTACCCGCTTGACAACGTCGAGTGGCCGGAGGGGTTGGAGTCCCTC
TTCTTGGGGCAGAGCTTCTCCGAGGACCTTGACTCAATGGATTTGCCGGC
GAGCATGACGATCCGTATAGTAGGCGACTCGTCCGAAGATTGCGACGTGG
TCGAATGGCCTTTTTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1292:1491..2907-

>mRNA_E-fasciculatus_F_contig1292.2210.1 ID=mRNA_E-fasciculatus_F_contig1292.2210.1|Name=mRNA_E-fasciculatus_F_contig1292.2210.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2262bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1292:1491..2907- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGTGGACCGCAAACCGAGACGGACGTCATCGGCACAGCGGGAAAGGGGC
AGGAGCCCCCGGGGTACCTGGTGTGCTCGTCAACCGGCTGACTCTGGACG
ACTGCTTCAACCCATCAGTGACCGACCTGCGCTGGCCTGAACGGTTGAGA
GAGATTGCCTTCGGCAAACAATTCGACCGGAGCCTGTGCGGCGTTCAGTG
GCCACGGATGCTGGCGAGCGTCCGTTTCGGGTGCTCGTTCGACCAGCCGT
TGGGCAGAGTGGAGTTTCCGGACGGGTTGGAGAGCCTCGCCTTCGGGTGT
GGCTTCAATCAGCCCCTAGCTGGAGTGAAGCTTCCTCGCGGACTCCGGTC
GCTCTGGCTGGGCGAGGCCTTCGACCAGCCGCTGGACGGCGTGGAGTTTC
CCGATGGGCTGCAGACACTCTCTCTCGGCGGGGTGTTCGACCAGCCGTTG
TGTGGAGTGAAGTGGCCGGGGGGTCTCGAGAGACTGGCGTTGGGCAGAGA
GTTCAACCAGCCCCTCGGTGATGTGTACTGGCCTCAGGGTGTTCGACAGA
TCGCTTTCAGCCAACAGTTCGACCACCCAATCGAGTCGATGGCGTTCCCG
TCCTCTGTGCAATGGATAGAGTTCGGGTCTAACTTCAACCAGTTGTGGAC
CGCAAACCGAGACGGACGTCATCGGCACAGCGGGAAAGGGGCAGGAGCCC
CCGGGGTACCTGGTGTGCTCGTCAACCGGCTGACTCTGGACGACTGCTTC
AACCCATCAGTGACCGACCTGCGCTGGCCTGAACGGTTGAGAGAGATTGC
CTTCGGCAAACAATTCGACCGGAGCCTGTGCGGCGTTCAGTGGCCACGGA
TGCTGGCGAGCGTCCGTTTCGGGTGCTCGTTCGACCAGCCGTTGGGCAGA
GTGGAGTTTCCGGACGGGTTGGAGAGCCTCGCCTTCGGGTGTGGCTTCAA
TCAGCCCCTAGCTGGAGTGAAGCTTCCTCGCGGACTCCGGTCGCTCTGGC
TGGGCGAGGCCTTCGACCAGCCGCTGGACGGCGTGGAGTTTCCCGATGGG
CTGCAGACACTCTCTCTCGGCGGGGTGTTCGACCAGCCGTTGTGTGGAGT
GAAGTGGCCGGGGGGTCTCGAGAGACTGGCGTTGGGCAGAGAGTTCAACC
AGCCCCTCGGTGATGTGTACTGGCCTCAGGGTGTTCGACAGATCGCTTTC
AGCCAACAGTTCGACCACCCAATCGAGTCGATGGCGTTCCCGTCCTCTGT
GCAATGGATAGAGTTCGGGTCTAACTTCAACCAGGATGTGGGTGGTGTCA
AGTGGCCCGCAGATCTCGAGTACCTCAAGTTCAGCTGCAGGTTCAACAAG
ACCTTGGAGCACACAAAGCTTCCGCGAGGACTAGCTGTTCTGAAGTTGTG
CTGCATGTGGGACCACTCTCTTGCTCGGGTAGACTTGCCCGAGTCTTTGA
AACTCCTGCGCCTGAGCGATGGTTTCGATCGGCCTCTAGACGAGGTTCGC
TTTCCTCCTGGCCTCGCCTCTCTTTACCTTGGCGACACCTTCGACCAGCC
CCTGAACGAAGTGAAATGGCCGGCCAACCTGAAGACGTTGTACTTGGGAG
ATTTGTTCGACTACCCGCTTGACAACGTCGAGTGGCCGGAGGGGTTGGAG
TCCCTCTTCTTGGGGCAGAGCTTCTCCGAGGACCTTGACTCAATGGATTT
GCCGGCGAGCATGACGATCCGTATAGTAGGCGACTCGTCCGAAGATTGCG
ACGTGGTCGAATGGCCTTTTTGAGATGTGGGTGGTGTCAAGTGGCCCGCA
GATCTCGAGTACCTCAAGTTCAGCTGCAGGTTCAACAAGACCTTGGAGCA
CACAAAGCTTCCGCGAGGACTAGCTGTTCTGAAGTTGTGCTGCATGTGGG
ACCACTCTCTTGCTCGGGTAGACTTGCCCGAGTCTTTGAAACTCCTGCGC
CTGAGCGATGGTTTCGATCGGCCTCTAGACGAGGTTCGCTTTCCTCCTGG
CCTCGCCTCTCTTTACCTTGGCGACACCTTCGACCAGCCCCTGAACGAAG
TGAAATGGCCGGCCAACCTGAAGACGTTGTACTTGGGAGATTTGTTCGAC
TACCCGCTTGACAACGTCGAGTGGCCGGAGGGGTTGGAGTCCCTCTTCTT
GGGGCAGAGCTTCTCCGAGGACCTTGACTCAATGGATTTGCCGGCGAGCA
TGACGATCCGTATAGTAGGCGACTCGTCCGAAGATTGCGACGTGGTCGAA
TGGCCTTTTTGA
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