mRNA_E-fasciculatus_F_contig12914.2207.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12914.2207.1
Unique NamemRNA_E-fasciculatus_F_contig12914.2207.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12914.2207.1 vs. uniprot
Match: D7G836_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G836_ECTSI)

HSP 1 Score: 292 bits (747), Expect = 5.210e-98
Identity = 152/192 (79.17%), Postives = 164/192 (85.42%), Query Frame = 1 
Query:    1 SRKKAGHSSPMKSPTTDGTRTIGEAWTQATRLSAGGLLHEATLGFLRLRVLLCNEKSKLQGFKPGGKGQTRHATQGMEDAQAMAPSARACAKATCVVDKLLSKLSSTVLSMPWHAAVQVERELRSHLRFLKTNHYAALQLPLPRRASANRTSPSGGISDALVKSNYRRLALRFHPGWWCLHPLRMPPRFHDL 576
            SRK+AGH+ PMKS T+D TRTIGEAWTQATRLSAGGLLHEATLGFLRLRVLL NEKSKLQ F+PGGKGQT+HATQGME+AQAM+PS RA  KATCVVDKLLSK  S V    W AA QV+RELRSHLRFLK+NH+AALQLPLPRRASA+RTS S  ISDALVK  YRRLALRFHPGWWCL  L +PP F  L
Sbjct:    2 SRKRAGHTEPMKSHTSDDTRTIGEAWTQATRLSAGGLLHEATLGFLRLRVLLQNEKSKLQRFEPGGKGQTQHATQGMEEAQAMSPSNRASTKATCVVDKLLSKNPSRVFLSRWLAAFQVDRELRSHLRFLKSNHFAALQLPLPRRASADRTSRSASISDALVKRKYRRLALRFHPGWWCLRLLHLPPGFMTL 193
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12914.2207.1 vs. uniprot
Match: A0A6H5K6L8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L8_9PHAE)

HSP 1 Score: 249 bits (636), Expect = 1.670e-81
Identity = 133/182 (73.08%), Postives = 148/182 (81.32%), Query Frame = 1 
Query:   31 MKSPTTDGTRTIGEAWTQATRLSAGGLLHEATLGFLRLRVLLCNEKSKLQGFKPGGKGQTRHATQGMEDAQAMAPSARACAKATCVVDKLLSKLSSTVLSMPWHAAVQVERELRSHLRFLKTNHYAALQLPLPRRASANRTSPSGGISDALVKSNYRRLALRFHPGWWCLHPLRMPPRFHDL 576
            MKS T D TRTIGEAWTQATRLSAGGLLH ATLGFLRLR++L NEKSKLQ F+PGGKGQT++ATQGME+AQAM+PS RA AKATCVVDKLLSK               VERELR+HLRFLK+NH+AALQLPLPRRAS++RTS    ISDALVK+NYRRLAL+FHPGWW L  L +PP F  L
Sbjct:    1 MKSQTIDTTRTIGEAWTQATRLSAGGLLHAATLGFLRLRIILHNEKSKLQTFEPGGKGQTQNATQGMEEAQAMSPSNRASAKATCVVDKLLSK---------------VERELRTHLRFLKSNHFAALQLPLPRRASSDRTSRIARISDALVKNNYRRLALQFHPGWWYLRLLHLPPGFTTL 167
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12914.2207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G836_ECTSI5.210e-9879.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6L8_9PHAE1.670e-8173.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12914contigE-fasciculatus_F_contig12914:1653..2746 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_010620.1
Exons3
Model size616
Cds size564
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12914.2207.1prot_E-fasciculatus_F_contig12914.2207.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12914 1675..2716 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927795.3781428-UTR-E-fasciculatus_F_contig12914:1652..16741622927795.3781428-UTR-E-fasciculatus_F_contig12914:1652..1674Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12914 1653..1674 -
1695995698.354295-UTR-E-fasciculatus_F_contig12914:1652..16741695995698.354295-UTR-E-fasciculatus_F_contig12914:1652..1674Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12914 1653..1674 -
1622927795.4681442-UTR-E-fasciculatus_F_contig12914:2716..27461622927795.4681442-UTR-E-fasciculatus_F_contig12914:2716..2746Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12914 2717..2746 -
1695995698.4065278-UTR-E-fasciculatus_F_contig12914:2716..27461695995698.4065278-UTR-E-fasciculatus_F_contig12914:2716..2746Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12914 2717..2746 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927795.3929005-CDS-E-fasciculatus_F_contig12914:1674..19591622927795.3929005-CDS-E-fasciculatus_F_contig12914:1674..1959Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12914 1675..1959 -
1695995698.3671756-CDS-E-fasciculatus_F_contig12914:1674..19591695995698.3671756-CDS-E-fasciculatus_F_contig12914:1674..1959Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12914 1675..1959 -
1622927795.4070618-CDS-E-fasciculatus_F_contig12914:2156..23191622927795.4070618-CDS-E-fasciculatus_F_contig12914:2156..2319Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12914 2157..2319 -
1695995698.3775978-CDS-E-fasciculatus_F_contig12914:2156..23191695995698.3775978-CDS-E-fasciculatus_F_contig12914:2156..2319Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12914 2157..2319 -
1622927795.4300385-CDS-E-fasciculatus_F_contig12914:2600..27161622927795.4300385-CDS-E-fasciculatus_F_contig12914:2600..2716Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12914 2601..2716 -
1695995698.3910477-CDS-E-fasciculatus_F_contig12914:2600..27161695995698.3910477-CDS-E-fasciculatus_F_contig12914:2600..2716Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12914 2601..2716 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12914.2207.1

>prot_E-fasciculatus_F_contig12914.2207.1 ID=prot_E-fasciculatus_F_contig12914.2207.1|Name=mRNA_E-fasciculatus_F_contig12914.2207.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=188bp
MKSPTTDGTRTIGEAWTQATRLSAGGLLHEATLGFLRLRVLLCNEKSKLQ
GFKPGGKGQTRHATQGMEDAQAMAPSARACAKATCVVDKLLSKLSSTVLS
MPWHAAVQVERELRSHLRFLKTNHYAALQLPLPRRASANRTSPSGGISDA
LVKSNYRRLALRFHPGWWCLHPLRMPPRFHDLCCCSS*
back to top

mRNA from alignment at E-fasciculatus_F_contig12914:1653..2746-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12914.2207.1 ID=mRNA_E-fasciculatus_F_contig12914.2207.1|Name=mRNA_E-fasciculatus_F_contig12914.2207.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1094bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12914:1653..2746- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCCAGAAAGAAAGCCGGGCACTCATCACCGATGAAGTCGCCTACGACCGA
CGGCACTCGAACGATCGGGGAGGCCTGGACACAAGCAACTCGTCTCTCCG
CGGGTGGACTTTTGCACGAGGCCACTCTGGGTTTCCTAAGACTGAGGTGC
GAACGAGAATCGCGTTCTGTTCTTCGCACGGCGACCGTGGCATGCGACGC
GAAACGGTCGTGGATTGCTCCCCACCTACGGACGATTGCCTTGTCGATTT
GCTCGGACTGTGGCAGCAGCACGACCGAGCGATATTTTTTCAGTCAGCAG
CACGATCGAGCGATATATTTTCAGTCGTTCCTCGAGATGTGCGCGTATGG
TTGCCGGGACACTCTCTTGGTAGATGTTTCTCGCTTTAGCCTCCCAACGA
TACCGTCCTCTCCGTGTCGCCACATAGAGTTCTGCTGTGCAACGAGAAGA
GCAAGTTACAAGGATTCAAACCCGGCGGCAAGGGCCAAACACGGCATGCG
ACGCAAGGGATGGAGGACGCCCAGGCCATGGCACCGTCGGCAAGGGCATG
CGCCAAAGCGACATGCGTCGTTGATAAGCTTTTGTCCAAGGTGAGGCCAT
ATTACGAGCTTCACAGTACTCCTCCGAGGCTGGCGGCACCACCTTTCTTG
TGCGCATGAGGCCATTTGGCTTCTATCCCCCCATATGTAGACTTCACCTC
CGCGACTATCTTCGTCCGAGAAAGTGTCCTCCGTATATTTTGTGTTCGTG
CTGGCTTCCGGTGTGTCCCGTGCATGGCGTGCCACAGCTCTCATCGACAG
TGCTCTCAATGCCGTGGCACGCCGCTGTGCAGGTGGAACGAGAACTTCGA
TCGCACCTGCGTTTTTTGAAGACCAACCATTATGCGGCGTTACAGTTACC
TCTCCCCAGGCGTGCTAGTGCTAACCGTACCAGCCCGAGCGGCGGCATAT
CGGACGCCCTCGTGAAAAGCAATTATCGGCGGCTGGCGCTCCGGTTCCAT
CCTGGTTGGTGGTGTTTGCATCCCTTACGAATGCCCCCCCGGTTTCATGA
CCTTTGCTGCTGTTCATCGTAACTGTGAGCAGGGTACACTTCAT
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12914:1653..2746-

>mRNA_E-fasciculatus_F_contig12914.2207.1 ID=mRNA_E-fasciculatus_F_contig12914.2207.1|Name=mRNA_E-fasciculatus_F_contig12914.2207.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1128bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12914:1653..2746- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAGTCGCCTACGACCGACGGCACTCGAACGATCGGGGAGGCCTGGAC
ACAAGCAACTCGTCTCTCCGCGGGTGGACTTTTGCACGAGGCCACTCTGG
GTTTCCTAAGACTGAGATGAAGTCGCCTACGACCGACGGCACTCGAACGA
TCGGGGAGGCCTGGACACAAGCAACTCGTCTCTCCGCGGGTGGACTTTTG
CACGAGGCCACTCTGGGTTTCCTAAGACTGAGAGTTCTGCTGTGCAACGA
GAAGAGCAAGTTACAAGGATTCAAACCCGGCGGCAAGGGCCAAACACGGC
ATGCGACGCAAGGGATGGAGGACGCCCAGGCCATGGCACCGTCGGCAAGG
GCATGCGCCAAAGCGACATGCGTCGTTGATAAGCTTTTGTCCAAGAGTTC
TGCTGTGCAACGAGAAGAGCAAGTTACAAGGATTCAAACCCGGCGGCAAG
GGCCAAACACGGCATGCGACGCAAGGGATGGAGGACGCCCAGGCCATGGC
ACCGTCGGCAAGGGCATGCGCCAAAGCGACATGCGTCGTTGATAAGCTTT
TGTCCAAGCTCTCATCGACAGTGCTCTCAATGCCGTGGCACGCCGCTGTG
CAGGTGGAACGAGAACTTCGATCGCACCTGCGTTTTTTGAAGACCAACCA
TTATGCGGCGTTACAGTTACCTCTCCCCAGGCGTGCTAGTGCTAACCGTA
CCAGCCCGAGCGGCGGCATATCGGACGCCCTCGTGAAAAGCAATTATCGG
CGGCTGGCGCTCCGGTTCCATCCTGGTTGGTGGTGTTTGCATCCCTTACG
AATGCCCCCCCGGTTTCATGACCTTTGCTGCTGTTCATCGTAACTCTCAT
CGACAGTGCTCTCAATGCCGTGGCACGCCGCTGTGCAGGTGGAACGAGAA
CTTCGATCGCACCTGCGTTTTTTGAAGACCAACCATTATGCGGCGTTACA
GTTACCTCTCCCCAGGCGTGCTAGTGCTAACCGTACCAGCCCGAGCGGCG
GCATATCGGACGCCCTCGTGAAAAGCAATTATCGGCGGCTGGCGCTCCGG
TTCCATCCTGGTTGGTGGTGTTTGCATCCCTTACGAATGCCCCCCCGGTT
TCATGACCTTTGCTGCTGTTCATCGTAA
back to top