mRNA_E-fasciculatus_F_contig12877.2169.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12877.2169.1
Unique NamemRNA_E-fasciculatus_F_contig12877.2169.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12877.2169.1 vs. uniprot
Match: D8LJD9_ECTSI (PH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJD9_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 1.770e-54
Identity = 91/94 (96.81%), Postives = 92/94 (97.87%), Query Frame = 1
Query:    1 EALSEGEAVARGLAEGRMNRTLSLPDCLCLRQPRVVSYAEVGDPKGFVAFFILGVDSHRYMSFLLDKPARARGVRLLCLDRPGRGRTSDFEDEK 282
            EALSEGEAVARGLAE RMNRTLSLP+C CLRQPRVVSYAEVGDPKGFVAFFILGVDSHRYMSFLLDKPARARGVRLLCLDRPGRGRTSDFEDEK
Sbjct:   35 EALSEGEAVARGLAEERMNRTLSLPECPCLRQPRVVSYAEVGDPKGFVAFFILGVDSHRYMSFLLDKPARARGVRLLCLDRPGRGRTSDFEDEK 128          
BLAST of mRNA_E-fasciculatus_F_contig12877.2169.1 vs. uniprot
Match: A0A7S3YHK9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YHK9_HETAK)

HSP 1 Score: 67.8 bits (164), Expect = 9.180e-12
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 1
Query:  106 VSYAEVGDPKGFVAFFILGVDSHRYMSFLLDKPARARGVRLLCLDRPGRGRTSDFE 273
            +SYAEVGD  GF     LGVDSHRY + LL+  A    +RL+C+DRPGRG +S+ E
Sbjct:   91 LSYAEVGDLNGFPMLAFLGVDSHRYAAILLEDLALEHKIRLICIDRPGRGLSSNLE 146          
BLAST of mRNA_E-fasciculatus_F_contig12877.2169.1 vs. uniprot
Match: T0R0W9_SAPDV (AB hydrolase-1 domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R0W9_SAPDV)

HSP 1 Score: 68.6 bits (166), Expect = 1.190e-11
Identity = 35/76 (46.05%), Postives = 46/76 (60.53%), Query Frame = 1
Query:   37 LAEGRMNRTLSLPDCLCLRQPRVVSYAEVGDPKGFVAFFILGVDSHRYMSFLLDKPARARGVRLLCLDRPGRGRTS 264
            L +G  NRTL L D       R+VSYA+VG   G      LG+  HR+ + L++  AR RG+RLLC+DRPG G +S
Sbjct:    6 LTDGAFNRTLRLAD------GRIVSYADVGAQDGMPVLLFLGMHGHRHATVLVEAVARQRGLRLLCIDRPGYGLSS 75          
BLAST of mRNA_E-fasciculatus_F_contig12877.2169.1 vs. uniprot
Match: A0A0K3C3V7_RHOTO (FGENESH: predicted gene_1.120 protein n=2 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A0K3C3V7_RHOTO)

HSP 1 Score: 68.6 bits (166), Expect = 2.000e-11
Identity = 41/96 (42.71%), Postives = 54/96 (56.25%), Query Frame = 1
Query:    7 LSEGEAVARGLAEGRMNRTLSLPDCLCLRQPR----VVSYAEVGDPKGFVAFFILGVDSHRYMSFLLDKPARARGVRLLCLDRPGRGRTSDFEDEK 282
            L++ EA+A      R+ ++  L   L LRQP      VS A+VGDP G      LG+ S RY+  L D+ A A G+RLLC DR G G+TSD  D +
Sbjct:  535 LNDSEALATERELARLLKSPRLTRILTLRQPPNAGLSVSVADVGDPSGHPVLVFLGLGSVRYLIALYDEIAEALGLRLLCFDRWGLGKTSDIPDSQ 630          
BLAST of mRNA_E-fasciculatus_F_contig12877.2169.1 vs. uniprot
Match: A0A485L2T6_9STRA (Aste57867_15173 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L2T6_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.850e-11
Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = 1
Query:  100 RVVSYAEVGDPKGFVAFFILGVDSHRYMSFLLDKPARARGVRLLCLDRPGRGRTSD 267
            R VS+A+VGD +GF   F+LG+  HRY SFL    A   G+RL+C+DRPG G + D
Sbjct:   29 RHVSFADVGDSRGFPVLFLLGMQGHRYHSFLFSTLAHRHGIRLICIDRPGYGLSDD 84          
BLAST of mRNA_E-fasciculatus_F_contig12877.2169.1 vs. uniprot
Match: A0A6G0WGM6_9STRA (AB hydrolase-1 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WGM6_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 4.980e-11
Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 1
Query:   55 NRTLSLPDCLCLRQPRVVSYAEVGDPKGFVAFFILGVDSHRYMSFLLDKPARARGVRLLCLDRPGRGRTSD 267
            NR+++L    C RQ   VSYAEVGDP+GF    + G+  HRY S+L +  A    +RL C+DRPG GR+ D
Sbjct:   21 NRSVALQ---CGRQ---VSYAEVGDPRGFPVICLFGMRGHRYHSYLYNNLASNHAIRLFCIDRPGYGRSDD 85          
BLAST of mRNA_E-fasciculatus_F_contig12877.2169.1 vs. uniprot
Match: M7X0D7_RHOT1 (Alpha/beta fold family hydrolase n=2 Tax=Rhodosporidium toruloides TaxID=5286 RepID=M7X0D7_RHOT1)

HSP 1 Score: 66.6 bits (161), Expect = 9.370e-11
Identity = 39/96 (40.62%), Postives = 53/96 (55.21%), Query Frame = 1
Query:    7 LSEGEAVARGLAEGRMNRTLSLPDCLCLRQPR----VVSYAEVGDPKGFVAFFILGVDSHRYMSFLLDKPARARGVRLLCLDRPGRGRTSDFEDEK 282
            ++E E +A      R+ ++  L   + LRQP      VS A+VGDP G      LG+ S RY+  L D+ A A G+RLLC DR G G+TSD  D +
Sbjct:  426 VTESETLATERELARLLKSPRLTRIITLRQPPNAGLSVSIADVGDPSGHPVLVFLGLGSVRYLVALYDEIAEALGLRLLCFDRWGLGKTSDISDSQ 521          
BLAST of mRNA_E-fasciculatus_F_contig12877.2169.1 vs. uniprot
Match: A0A024TWV0_9STRA (AB hydrolase-1 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TWV0_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.010e-10
Identity = 34/69 (49.28%), Postives = 43/69 (62.32%), Query Frame = 1
Query:   49 RMNRTLSLPDCLCLRQPRVVSYAEVGDPKGFVAFFILGVDSHRYMSFLLDKPARARGVRLLCLDRPGRG 255
            + NR L+L    C RQ   VSYAEVGDP+GF    +LG+  HR+ S+L    A   G+RL C+DRPG G
Sbjct:   19 KFNRRLTLQ---CGRQ---VSYAEVGDPRGFPVICLLGMRGHRFHSYLYSNLAHNHGIRLFCIDRPGYG 81          
BLAST of mRNA_E-fasciculatus_F_contig12877.2169.1 vs. uniprot
Match: A0A485L5E6_9STRA (Aste57867_15174 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L5E6_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.360e-10
Identity = 36/75 (48.00%), Postives = 45/75 (60.00%), Query Frame = 1
Query:   31 RGLAEGRMNRTLSLPDCLCLRQPRVVSYAEVGDPKGFVAFFILGVDSHRYMSFLLDKPARARGVRLLCLDRPGRG 255
            R L   + NR L+L    C RQ   VSYAEVGDP+GF    +LG+  HRY S+L +  A    +RL C+DRPG G
Sbjct:   15 RVLDAKQFNRRLTLQ---CGRQ---VSYAEVGDPRGFPVICLLGMRGHRYHSYLYNNLAHNHSIRLFCIDRPGYG 83          
BLAST of mRNA_E-fasciculatus_F_contig12877.2169.1 vs. uniprot
Match: A0A485KQP7_9STRA (Aste57867_10372 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KQP7_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 6.970e-10
Identity = 29/61 (47.54%), Postives = 40/61 (65.57%), Query Frame = 1
Query:   88 LRQPRVVSYAEVGDPKGFVAFFILGVDSHRYMSFLLDKPARARGVRLLCLDRPGRGRTSDF 270
            LR  R+VSYA+VGDP+G     + G   HRY+S++    A+A G+R LC+DRPG G +  F
Sbjct:   30 LRCGRLVSYAQVGDPRGVPVICLFGQGGHRYVSYIYHLLAQAHGLRFLCVDRPGYGLSDLF 90          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12877.2169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJD9_ECTSI1.770e-5496.81PH domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A7S3YHK9_HETAK9.180e-1255.36Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
T0R0W9_SAPDV1.190e-1146.05AB hydrolase-1 domain-containing protein n=1 Tax=S... [more]
A0A0K3C3V7_RHOTO2.000e-1142.71FGENESH: predicted gene_1.120 protein n=2 Tax=Rhod... [more]
A0A485L2T6_9STRA2.850e-1151.79Aste57867_15173 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0WGM6_9STRA4.980e-1147.89AB hydrolase-1 domain-containing protein n=1 Tax=A... [more]
M7X0D7_RHOT19.370e-1140.63Alpha/beta fold family hydrolase n=2 Tax=Rhodospor... [more]
A0A024TWV0_9STRA1.010e-1049.28AB hydrolase-1 domain-containing protein n=2 Tax=A... [more]
A0A485L5E6_9STRA1.360e-1048.00Aste57867_15174 protein n=1 Tax=Aphanomyces stella... [more]
A0A485KQP7_9STRA6.970e-1047.54Aste57867_10372 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12877contigE-fasciculatus_F_contig12877:655..939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score187.6
Seed ortholog evalue2.7e-45
Seed eggNOG ortholog2880.D8LJD9
EggNOG free text desc.ureidoglycolate hydrolase activity
EggNOG OGs2QTP8@2759,COG3194@1
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size285
Cds size285
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927790.992381-CDS-E-fasciculatus_F_contig12877:654..9391622927790.992381-CDS-E-fasciculatus_F_contig12877:654..939Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12877 655..939 -
1695995696.045785-CDS-E-fasciculatus_F_contig12877:654..9391695995696.045785-CDS-E-fasciculatus_F_contig12877:654..939Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12877 655..939 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12877.2169.1prot_E-fasciculatus_F_contig12877.2169.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12877 655..939 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12877.2169.1

>prot_E-fasciculatus_F_contig12877.2169.1 ID=prot_E-fasciculatus_F_contig12877.2169.1|Name=mRNA_E-fasciculatus_F_contig12877.2169.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=95bp
EALSEGEAVARGLAEGRMNRTLSLPDCLCLRQPRVVSYAEVGDPKGFVAF
FILGVDSHRYMSFLLDKPARARGVRLLCLDRPGRGRTSDFEDEK*
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mRNA from alignment at E-fasciculatus_F_contig12877:655..939-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12877.2169.1 ID=mRNA_E-fasciculatus_F_contig12877.2169.1|Name=mRNA_E-fasciculatus_F_contig12877.2169.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=285bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12877:655..939- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAAGCCTTGAGCGAGGGAGAGGCGGTGGCGCGAGGGCTGGCGGAGGGGCG GATGAACCGCACGTTGTCGCTGCCGGACTGCCTGTGCCTTCGCCAGCCGC GGGTCGTCAGCTACGCCGAGGTCGGCGACCCCAAGGGCTTCGTTGCGTTC TTCATCCTGGGGGTGGACTCTCACCGGTACATGTCGTTCCTTCTGGACAA GCCTGCCAGGGCCAGGGGGGTCCGGCTGCTCTGCTTGGACCGGCCTGGGA GGGGAAGAACGAGCGACTTCGAGGACGAAAAGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12877:655..939-

>mRNA_E-fasciculatus_F_contig12877.2169.1 ID=mRNA_E-fasciculatus_F_contig12877.2169.1|Name=mRNA_E-fasciculatus_F_contig12877.2169.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=570bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12877:655..939- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAAGCCTTGAGCGAGGGAGAGGCGGTGGCGCGAGGGCTGGCGGAGGGGCG
GATGAACCGCACGTTGTCGCTGCCGGACTGCCTGTGCCTTCGCCAGCCGC
GGGTCGTCAGCTACGCCGAGGTCGGCGACCCCAAGGGCTTCGTTGCGTTC
TTCATCCTGGGGGTGGACTCTCACCGGTACATGTCGTTCCTTCTGGACAA
GCCTGCCAGGGCCAGGGGGGTCCGGCTGCTCTGCTTGGACCGGCCTGGGA
GGGGAAGAACGAGCGACTTCGAGGACGAAAAGTGAGAAGCCTTGAGCGAG
GGAGAGGCGGTGGCGCGAGGGCTGGCGGAGGGGCGGATGAACCGCACGTT
GTCGCTGCCGGACTGCCTGTGCCTTCGCCAGCCGCGGGTCGTCAGCTACG
CCGAGGTCGGCGACCCCAAGGGCTTCGTTGCGTTCTTCATCCTGGGGGTG
GACTCTCACCGGTACATGTCGTTCCTTCTGGACAAGCCTGCCAGGGCCAG
GGGGGTCCGGCTGCTCTGCTTGGACCGGCCTGGGAGGGGAAGAACGAGCG
ACTTCGAGGACGAAAAGTGA
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