mRNA_E-fasciculatus_F_contig12795.2116.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12795.2116.1
Unique NamemRNA_E-fasciculatus_F_contig12795.2116.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12795.2116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12795contigE-fasciculatus_F_contig12795:2412..3314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size903
Cds size603
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12795.2116.1prot_E-fasciculatus_F_contig12795.2116.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12795 2510..3112 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927784.9166524-UTR-E-fasciculatus_F_contig12795:2411..25091622927784.9166524-UTR-E-fasciculatus_F_contig12795:2411..2509Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12795 2412..2509 +
1695995693.052561-UTR-E-fasciculatus_F_contig12795:2411..25091695995693.052561-UTR-E-fasciculatus_F_contig12795:2411..2509Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12795 2412..2509 +
1622927784.9566417-UTR-E-fasciculatus_F_contig12795:3112..33141622927784.9566417-UTR-E-fasciculatus_F_contig12795:3112..3314Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12795 3113..3314 +
1695995693.072584-UTR-E-fasciculatus_F_contig12795:3112..33141695995693.072584-UTR-E-fasciculatus_F_contig12795:3112..3314Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12795 3113..3314 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927784.9426436-CDS-E-fasciculatus_F_contig12795:2509..31121622927784.9426436-CDS-E-fasciculatus_F_contig12795:2509..3112Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12795 2510..3112 +
1695995693.0644825-CDS-E-fasciculatus_F_contig12795:2509..31121695995693.0644825-CDS-E-fasciculatus_F_contig12795:2509..3112Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12795 2510..3112 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12795.2116.1

>prot_E-fasciculatus_F_contig12795.2116.1 ID=prot_E-fasciculatus_F_contig12795.2116.1|Name=mRNA_E-fasciculatus_F_contig12795.2116.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=201bp
MLGRKQLLEVYLFHPNAHACIGTNTNNHHSTPSIRINILQNKLSLPCSVC
CQSLYRHPPSLPSPLVHPPNALAPPSVRDAGSYCRRHSLRPWRNASRMNR
LHTSSSTAAGYRPSGCVHLATTKHCLIKVNTASSAEEKGWDGRDEGPCVQ
STTRFPDLFLPQGRPAENPKYSIMQPTTTQRGKTSIAIIDTVGGFSFRRP
*
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mRNA from alignment at E-fasciculatus_F_contig12795:2412..3314+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12795.2116.1 ID=mRNA_E-fasciculatus_F_contig12795.2116.1|Name=mRNA_E-fasciculatus_F_contig12795.2116.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=903bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12795:2412..3314+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCAAATTACGGGGGATGCCACTGCATCTCGAAAGAAAGAAAGGTGGGGT
TTCGTCGGACAGCAAAAAATGTCTGCATAAAGTGCTTAGTGTTGGACCAT
GCTCGGAAGAAAACAATTGCTTGAAGTGTATTTATTTCATCCAAATGCGC
ATGCATGCATAGGAACCAACACTAACAACCATCACAGCACACCTTCAATC
CGCATCAATATTCTTCAAAATAAACTGTCTCTCCCATGTTCTGTTTGTTG
CCAATCGCTTTACCGCCACCCCCCCTCCCTGCCGTCGCCTTTGGTGCATC
CGCCAAACGCGTTGGCTCCCCCGTCCGTCCGTGATGCTGGATCCTACTGT
AGACGCCACTCACTCCGTCCGTGGCGCAACGCATCACGAATGAATAGACT
ACATACGTCATCATCAACAGCAGCAGGTTACCGACCGAGTGGATGCGTGC
ACTTGGCAACGACGAAGCATTGCTTAATTAAGGTAAACACAGCATCATCA
GCAGAGGAGAAGGGGTGGGATGGGAGAGATGAAGGGCCGTGTGTACAGAG
CACGACGCGCTTTCCCGACCTCTTCCTTCCGCAAGGCAGACCAGCTGAAA
ACCCTAAATATAGCATTATGCAACCAACAACTACGCAACGAGGCAAAACA
TCCATCGCCATAATAGATACTGTAGGGGGATTTTCTTTTCGGAGACCGTA
ACAAGCCAATCTGATCTGAACGGCCGCAACAGCAACAACAACAACGTCCA
AGAACAGCAGCAGCAGCAGCAGTGTCGACAATACAGCAGCGCGCTTTCAA
CGTGCACACCAACAACAGACAGATGCTGACGTAGGCTCCCCCTCCCATTG
GCACCACAATACTACCTTTAGTCGGCGGTGCTGAAGAGCAGTCGCCGCCC
AGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12795:2412..3314+

>mRNA_E-fasciculatus_F_contig12795.2116.1 ID=mRNA_E-fasciculatus_F_contig12795.2116.1|Name=mRNA_E-fasciculatus_F_contig12795.2116.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1206bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12795:2412..3314+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTCGGAAGAAAACAATTGCTTGAAGTGTATTTATTTCATCCAAATGC
GCATGCATGCATAGGAACCAACACTAACAACCATCACAGCACACCTTCAA
TCCGCATCAATATTCTTCAAAATAAACTGTCTCTCCCATGTTCTGTTTGT
TGCCAATCGCTTTACCGCCACCCCCCCTCCCTGCCGTCGCCTTTGGTGCA
TCCGCCAAACGCGTTGGCTCCCCCGTCCGTCCGTGATGCTGGATCCTACT
GTAGACGCCACTCACTCCGTCCGTGGCGCAACGCATCACGAATGAATAGA
CTACATACGTCATCATCAACAGCAGCAGGTTACCGACCGAGTGGATGCGT
GCACTTGGCAACGACGAAGCATTGCTTAATTAAGGTAAACACAGCATCAT
CAGCAGAGGAGAAGGGGTGGGATGGGAGAGATGAAGGGCCGTGTGTACAG
AGCACGACGCGCTTTCCCGACCTCTTCCTTCCGCAAGGCAGACCAGCTGA
AAACCCTAAATATAGCATTATGCAACCAACAACTACGCAACGAGGCAAAA
CATCCATCGCCATAATAGATACTGTAGGGGGATTTTCTTTTCGGAGACCG
TAAATGCTCGGAAGAAAACAATTGCTTGAAGTGTATTTATTTCATCCAAA
TGCGCATGCATGCATAGGAACCAACACTAACAACCATCACAGCACACCTT
CAATCCGCATCAATATTCTTCAAAATAAACTGTCTCTCCCATGTTCTGTT
TGTTGCCAATCGCTTTACCGCCACCCCCCCTCCCTGCCGTCGCCTTTGGT
GCATCCGCCAAACGCGTTGGCTCCCCCGTCCGTCCGTGATGCTGGATCCT
ACTGTAGACGCCACTCACTCCGTCCGTGGCGCAACGCATCACGAATGAAT
AGACTACATACGTCATCATCAACAGCAGCAGGTTACCGACCGAGTGGATG
CGTGCACTTGGCAACGACGAAGCATTGCTTAATTAAGGTAAACACAGCAT
CATCAGCAGAGGAGAAGGGGTGGGATGGGAGAGATGAAGGGCCGTGTGTA
CAGAGCACGACGCGCTTTCCCGACCTCTTCCTTCCGCAAGGCAGACCAGC
TGAAAACCCTAAATATAGCATTATGCAACCAACAACTACGCAACGAGGCA
AAACATCCATCGCCATAATAGATACTGTAGGGGGATTTTCTTTTCGGAGA
CCGTAA
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