mRNA_E-fasciculatus_F_contig1279.2113.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1279.2113.1 vs. uniprot
Match: D8LDD0_ECTSI (PA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDD0_ECTSI) HSP 1 Score: 979 bits (2531), Expect = 0.000e+0 Identity = 663/815 (81.35%), Postives = 689/815 (84.54%), Query Frame = 1
Query: 115 MEARTGSSLDFAISGAGNRLEGLMIASLGGAAAAGGETPTSQGGERAED-GEGHAAGGSAGFVVVEARSPEATGVVSGDRLLNVNGIPLSSISLNEWIEQSTATFSAMHQPVSDSSTTRLAIFPLVDVAGDGGGTSTKQPQSSSNNASDFSDNGFGNQRCAA-QTNDPTCIALATGEARPTVGTAGASSTPGEGAIVENAAGFRLKGFLKVELVGLDGAEVTFRPGEARIAELVKQRDDAAAAEKEERERALAAAKALLEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQFTFTAEYKEVAPMGLTFDLANPLAVVSEVTAGGLSDIAGVKVGDHLVRVNERDTSEMKPTAALKVLQRAVWPRVLTFSVPESLVVEGSDEPLLLGLVVTDPEIVRGEYLMQAPKDWGGLRVSGEGDAAQQSWSCEPRPMALSDPPPACQLNLRLLSGDVQVGEGGEPVIALVKRGVCTFVEKAKNVQVAVLNAAADTATPSQDTTAAAGDGVITGTKAADSAXXXXXXXXXXXVSLRDSXXXXXXXSGAAVVGGGMVLLNGDDALADMPAGNLLTDDVNIPVAMIARGNGSSVEALLSWGVEVRAAISPFGACPLPSPMPTPNEQEGAKARKDDDDGGRLLVLSKAQGGREFNYRLGRYGPGVRDAEASPVAIAVADPFDGCEDKAYKVRVAGMFVVVERGGCSFSMKTLAAQRAGALGVIIANTAEVTLRVMADQGDGEKALIPTVMVSATAGKFLSAAAAGSSRSPILGRFTREEFEARRD 2553
MEARTGSSLDFA+SGAG+RLEGLMI SLGG AA G ETPT + ER+ED GEGHAA SAGFVVVEARSPEATGVVSGD L+ VN IPLSSISLNEWIEQS AT A HQP SDSST RLAIFPLVDV DGGGTSTK PQS +N+S SD+GFGNQRCAA Q NDP CIALA+GE RPT G A A+S PG +EN AGFRLKGFLKVELVGLDGAEVTFRPGEARIAEL+KQR+DAAAAE++E+ERALA AKALLEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX K+FTFTAEYKEVAPMGLTFDLAN LAVVSEVTAGGLSDIAGVK+GDHLVRVNERDTSEMKPTAALKV RGEYLMQAPKDWGGLR + E D AQ SWSCEPR MALSDPPPACQ NLRLLSG VQVG+G EPVIALVKRGVCTFVEKAKNVQVAVLNA ADTA P QDTTA AG+ VIT TKA XXXXXXXXXXX XXXXXXX MVLLNGDDALADMPAGNLLTDDVNIPVAMI+RGNGSSVEALLSWGVEVRAAISP+GACPLPSP P+ +EQ GAKARKDDDDGGR LVLSKAQGGREFNYRL RYGPGV DAEASPVAIAVADP DGCEDKAYKVRV+GMF VVERGGCSFSMKTLAAQRAGALGVIIANTAE TLRVMADQGDGEKALIPTVMVSATAG FLSAAAAGSSRSPILGRFTRE FEARRD
Sbjct: 1 MEARTGSSLDFAVSGAGDRLEGLMITSLGGPAATGSETPTGRREERSEDDGEGHAAERSAGFVVVEARSPEATGVVSGDLLVKVNDIPLSSISLNEWIEQSMATILATHQPASDSSTARLAIFPLVDVTSDGGGTSTKHPQSHPSNSSASSDDGFGNQRCAAAQLNDPMCIALASGEGRPTAG-ADAASPPGT---MENTAGFRLKGFLKVELVGLDGAEVTFRPGEARIAELIKQRNDAAAAERKEKERALAEAKALLEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKEFTFTAEYKEVAPMGLTFDLANLLAVVSEVTAGGLSDIAGVKIGDHLVRVNERDTSEMKPTAALKV---------------------------------------RGEYLMQAPKDWGGLRGASEEDVAQPSWSCEPRSMALSDPPPACQRNLRLLSGGVQVGDGREPVIALVKRGVCTFVEKAKNVQVAVLNAVADTAAPPQDTTALAGEDVITSTKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--MVLLNGDDALADMPAGNLLTDDVNIPVAMISRGNGSSVEALLSWGVEVRAAISPYGACPLPSPTPSADEQ-GAKARKDDDDGGRFLVLSKAQGGREFNYRLARYGPGVGDAEASPVAIAVADPIDGCEDKAYKVRVSGMFAVVERGGCSFSMKTLAAQRAGALGVIIANTAETTLRVMADQGDGEKALIPTVMVSATAGGFLSAAAAGSSRSPILGRFTREAFEARRD 769
BLAST of mRNA_E-fasciculatus_F_contig1279.2113.1 vs. uniprot
Match: A0A835ZE01_9STRA (PDZ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE01_9STRA) HSP 1 Score: 214 bits (544), Expect = 4.800e-55 Identity = 159/442 (35.97%), Postives = 212/442 (47.96%), Query Frame = 1
Query: 1105 FTFTAEYKEVAPMGLTFDLANPLAVVSEVTAGGLSDIAGVKVGDHLVRVNERDTSEMKPTAALKVLQRAVWPRVLTFSVPESLVVEGSDEPLLLGLVVTDPEIVRGEYLMQAPKDWGG----LRVSGEGDAAQQSWS----CEPRPMALSDPPPAC---QLNLRLLSGD--VQVGEGGEPVIALVKRGVCTFVEKAKNVQVAVLNAAADTATPSQDTTAAAGDGVITGTKAADSAXXXXXXXXXXXVSLRDSXXXXXXXSGAAVVGGGMVLLNGDDALADMPAGNLLTDDVNIPVAMIARGNGSSVEALLSWGVEVRAAISPFGACPLPSPMPTPNEQEGAKA---RKDDDDGGRLLVLSKAQGGREFNYRLGRYGPGVRDAEASPVAIAVADPFDGCEDKAYKVRVAGMFVVVERGGCSFSMKTLAAQRAGALGVIIANTA 2382
F +T E+KE PMG+TFDLAN AV+ +V G + G++ GD LV VN DTS M P A + + RA WPR L+ +VPE VE P + LV+ P +VRG Y ++AP DWG V + C + ++DP C Q + L G+ Q G V+ +V+RG C FV+KA NVQ + G A SA +V+ N D+ L DMPAGNL T + IPVAM+ + + +E +L G+ ++ G C PS +P P K R D GGRL V+S A+G REF++ L YGP + V + VA P D C+ +A VRV G FV+ ERG CSFSMKTLA Q+AGALG+I+ N A
Sbjct: 258 FVYTVEFKEAGPMGITFDLANTTAVIGDVARGSAAATLGIRAGDQLVEVNGVDTSGMGPERAGREVMRAEWPRRLSLTVPE---VEKPASPRDMELVILQPLLVRGVYALRAPNDWGADLPLAAVDNDXXXXXXXXXXXAVCSGVSVLVTDPDSGCATVQQAVSLAGGNFTAQADLSGGAVV-IVRRGSCPFVDKASNVQTLL-------------------GGAXXXXXXARSA---------------------------------VVVANTDNELVDMPAGNLPTAGITIPVAMMRKEDSFGLEQVLGVGMPCTGLLAAPGRCAAPS-LPRPERGADGKPVRNRPATDVGGRLAVVS-ARGAREFDWHLALYGPHAPNGTV--VNVVVASPSDACDAEALMVRVRGSFVIAERGVCSFSMKTLALQKAGALGMILTNNA 639
BLAST of mRNA_E-fasciculatus_F_contig1279.2113.1 vs. uniprot
Match: A0A6V1PI75_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PI75_HETAK) HSP 1 Score: 145 bits (365), Expect = 1.790e-33 Identity = 88/226 (38.94%), Postives = 129/226 (57.08%), Query Frame = 1
Query: 1870 MVLLNGDDALADMPAGNLLTDDVNIPVAMIARGNGSSVEALLSWGVEVRAAISPFGACPLPSPMPTPNEQEGAKARKDDDDGGRLLVLSKAQGGREFNYRLGRYGPGVRDAEASPVAIAVADPFDGCEDKAYKVRVAGMFVVVERGGCSFSMKTLAAQRAGALGVIIANTAEVT--LRVMADQGDGEKALIPTVMVSATAGKFLSAAAAGSSRSPILGRFTREEFE 2541
+V++N DD + DMPAG + TDD++ P+ MI + +G ++E +LS G V AA++P C + +P +Q+ R +D GG L+++S + F++ +GP +D ADP DGC+ + ++VRV G VVERGGCSFS KT+ AQ GA V + N + T RVMA D + IPTVM+S AG+ + AA + I+GRF EFE
Sbjct: 215 IVVVNQDDTVMDMPAGRMTTDDISAPIVMIGKTDGENIEKVLSMGYHVTAALAPQHLCD--QVVSSPLQQQNKPPRMKEDSGGGLILMSPGFS-KTFDFADALFGPPAKDNIV--YQFVYADPNDGCDPEKFQVRVRGAVAVVERGGCSFSQKTVVAQALGAAAVALLNNEDQTGVFRVMAPPEDEDIIRIPTVMISKRAGEHIREAA--KKKEQIIGRFVHTEFE 433
BLAST of mRNA_E-fasciculatus_F_contig1279.2113.1 vs. uniprot
Match: A0A7S3GR90_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GR90_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 1.910e-9 Identity = 51/132 (38.64%), Postives = 73/132 (55.30%), Query Frame = 1
Query: 2065 TPNEQEGAKARKDDDDGGRLLVLSKAQGGREFNYRLGRYGPGVRDAEASPVAIAVADPFDGCEDKAYKVRVAGMFVVVERGG-CSFSMKTLAAQRAGALGVIIANTAEV-TLRVMADQGDGEKALIPTVMVS 2454
T + +K R ++GGRL LS G F+Y L +GP ++ P + +A P GC+ AY VR+ G V + RGG CSF +K + AQ+ GA VII NT ++ T+R+MA + IP +MVS
Sbjct: 648 TSKPPDSSKTRGLTEEGGRL-ALSGQNGWAFFDYHLAMFGP--QEVPLGPFRLQMAMPPFGCDPGAYTVRIQGAVVAILRGGGCSFGIKVINAQKLGAKAVIIVNTDDMKTMRLMALPDEVPLIQIPCIMVS 776
BLAST of mRNA_E-fasciculatus_F_contig1279.2113.1 vs. uniprot
Match: A0A1V9ZF45_9STRA (RING-type domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZF45_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 5.860e-6 Identity = 39/86 (45.35%), Postives = 50/86 (58.14%), Query Frame = 1
Query: 2221 IAVADPFDGCEDKAYKVRVAGMFVVVERGGCSFSMKTLAAQRAGALGVIIANTAEVTLRVMAD-QGDGEKALIPTVMVSATAGKFL 2475
+ VA PF G A V VA V++ERG C+F+ K L AQ AGA+ VI+ TA+V M D +G+G IP M+SA GK L
Sbjct: 150 LVVASPFTGAS--ALSVDVADKIVLMERGVCTFAAKVLRAQAAGAVAVIVVQTADVWPYTMTDSKGEGATMAIPAFMISAKQGKGL 233
BLAST of mRNA_E-fasciculatus_F_contig1279.2113.1 vs. uniprot
Match: A0A2P6V3C7_9CHLO (alpha-1,2-Mannosidase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V3C7_9CHLO) HSP 1 Score: 62.0 bits (149), Expect = 6.010e-6 Identity = 37/91 (40.66%), Postives = 48/91 (52.75%), Query Frame = 1
Query: 2203 EASPVAIAVADPFDGCEDKAYKVRVAGMFVVVERGGCSFSMKTLAAQRAGALGVIIANTAEVTLRVMADQGDGEKALIPTVMVSATAGKFL 2475
EA VA A P D C++ + G VV+RGGC F K LAA+ AGA+GV++ N+A L M G + LIP V+V G L
Sbjct: 997 EAPAVA---AQPLDACDELTNAADLQGSMAVVQRGGCMFISKVLAAEAAGAVGVVVVNSAAAELVPMGTDPQGTQTLIPAVLVPGETGSQL 1084
BLAST of mRNA_E-fasciculatus_F_contig1279.2113.1 vs. uniprot
Match: A0A6B2M1I3_9BACT (Peptidase n=1 Tax=Oceanipulchritudo coccoides TaxID=2706888 RepID=A0A6B2M1I3_9BACT) HSP 1 Score: 61.2 bits (147), Expect = 7.630e-6 Identity = 42/113 (37.17%), Postives = 56/113 (49.56%), Query Frame = 1
Query: 2155 EFNYRLGRYGPGVRDAEASPVAIAVADPF----DGCEDKAYKVRVAGMFVVVERGGCSFSMKTLAAQRAGALGVIIANTAEVTLRVMADQG--DGEKALIPTVMVSATAGKFL 2475
E+ Y YGP V +A S + + V D D CE +AG ++RG C+F K+LAAQ AGA+ VIIAN E M DG + IPT+ +S G+ L
Sbjct: 268 EYAYEPALYGPPVPEAGISGILVPVDDGIAPLTDACEPITNGAGLAGNIAYIDRGTCNFDSKSLAAQLAGAVAVIIANNVEGGPVFMTGNSIVDGTELTIPTISISLEDGQAL 380
BLAST of mRNA_E-fasciculatus_F_contig1279.2113.1 vs. uniprot
Match: A0A521UPL0_9BACT (T9SS type A sorting domain-containing protein n=1 Tax=Saprospiraceae bacterium TaxID=2202734 RepID=A0A521UPL0_9BACT) HSP 1 Score: 60.1 bits (144), Expect = 2.320e-5 Identity = 41/101 (40.59%), Postives = 52/101 (51.49%), Query Frame = 1
Query: 2161 NYRLGRYGPGVR-DAEASPVAIAVADPF--DGCEDKAYKVRVAGMFVVVERGGCSFSMKTLAAQRAGALGVIIANTAEVTLRVMADQGDGEKALIPTVMVS 2454
N+ G Y V E V AV +P+ DGCED +AG +++RGGC F KTL AQ AGA+ VII N A+ T+ M G IP V +S
Sbjct: 445 NWGAGAYVTDVPVSGEVVIVDDAVEEPYASDGCEDIVNASELAGKIALIDRGGCEFGFKTLQAQNAGAIAVIICNFADETI-TMGAGAVGVNVNIPVVFIS 544
BLAST of mRNA_E-fasciculatus_F_contig1279.2113.1 vs. uniprot
Match: UPI0015559BE0 (M28 family metallopeptidase n=1 Tax=Nocardioides sp. zg-1230 TaxID=2736601 RepID=UPI0015559BE0) HSP 1 Score: 58.9 bits (141), Expect = 3.610e-5 Identity = 39/103 (37.86%), Postives = 51/103 (49.51%), Query Frame = 1
Query: 2176 RYGPGVRDAEASPV--AIAVADPFDGCEDKAYKVRVAGMFVVVERGGCSFSMKTLAAQRAGALGVIIANTAEVTLRVMADQGDGEKALIPTVMVSATAGKFLS 2478
R+ GV + A+ I AD DGCE + AG ++ERGGC F++K LAAQ AGA GV+I N T ++ GD IP V G L+
Sbjct: 125 RFDSGVPEGTATGTLFVIPAADATDGCEAGDFAGMAAGQIALIERGGCGFAIKALAAQNAGAAGVVIYNN---TAGLVGMIGDATGLTIPAVFALTEVGADLA 224
BLAST of mRNA_E-fasciculatus_F_contig1279.2113.1 vs. uniprot
Match: A0A3E0QN04_9BACT (PKD domain-containing protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3E0QN04_9BACT) HSP 1 Score: 59.3 bits (142), Expect = 3.820e-5 Identity = 37/110 (33.64%), Postives = 52/110 (47.27%), Query Frame = 1
Query: 2179 YGPGVRD---AEASPVAIAVADPFDGCEDKAYKVRVAGMFVVVERGGCSFSMKTLAAQRAGALGVIIANTAEVTLRVMADQGDGEKALIPTVMVSATAGKFLSAAAAGSS 2499
+GP V A+ PV + D C+ + G ++ RG C+F K LAAQ AGA+GVI+ N M D G+G IP+VM+S G ++ G S
Sbjct: 205 FGPAVTSTITADIIPVDDGNGNTNDACDPIQNAAALPGKIALITRGSCNFVDKVLAAQNAGAVGVIMMNNTSGAPFAMGDNGNGSSVTIPSVMISLADGNLITGTINGGS 314 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1279.2113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1279.2113.1 >prot_E-fasciculatus_F_contig1279.2113.1 ID=prot_E-fasciculatus_F_contig1279.2113.1|Name=mRNA_E-fasciculatus_F_contig1279.2113.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=830bp MPLARADSDRSSTSSSMEARTGSSLDFAISGAGNRLEGLMIASLGGAAAAback to top mRNA from alignment at E-fasciculatus_F_contig1279:4484..14412+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1279.2113.1 ID=mRNA_E-fasciculatus_F_contig1279.2113.1|Name=mRNA_E-fasciculatus_F_contig1279.2113.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=9929bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1279:4484..14412+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1279:4484..14412+ >mRNA_E-fasciculatus_F_contig1279.2113.1 ID=mRNA_E-fasciculatus_F_contig1279.2113.1|Name=mRNA_E-fasciculatus_F_contig1279.2113.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=4980bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1279:4484..14412+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |