mRNA_E-fasciculatus_F_contig12765.2104.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12765.2104.1
Unique NamemRNA_E-fasciculatus_F_contig12765.2104.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12765.2104.1 vs. uniprot
Match: D8LJW4_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJW4_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 2.590e-31
Identity = 74/132 (56.06%), Postives = 75/132 (56.82%), Query Frame = 3 
Query:    3 ANLSAVTNRRMSALHLAAEGGDVDLVRMLLMAGAPLETRSSTGDTPLTLATYFGHVEAVEKLLAMGANANAIDDDGHVAGRWYDEAVAETVKKQISKTLRTARKQRQGSSIAVGEEAEMPDVEPDSSTGLLA 398
            ANLSAVTNRRMSA                                                     AN NAIDDDGHVAGRWYDEAVAE VKKQISKTLR ARKQRQGSS+AVGEE EMPDVEPDSSTGLLA
Sbjct:   32 ANLSAVTNRRMSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANPNAIDDDGHVAGRWYDEAVAEAVKKQISKTLRAARKQRQGSSVAVGEELEMPDVEPDSSTGLLA 163
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BLAST of mRNA_E-fasciculatus_F_contig12765.2104.1 vs. uniprot
Match: A0A2B4RPN6_STYPI (Putative ankyrin repeat protein n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RPN6_STYPI)

HSP 1 Score: 62.4 bits (150), Expect = 2.160e-7
Identity = 37/106 (34.91%), Postives = 61/106 (57.55%), Query Frame = 3 
Query:    3 ANLSAVTNRRMSALHLAAEGGDVDLVRMLLMAGAPLETRSSTGDTPLTLATYFGHVEAVEKLLAMGANANAIDDDG-----HVAGRWYDEAVAETVKKQISKTLRT 305
            A ++ V  RR +ALH AAEGGD D++ ++L     +E++++ G TPL +A   G ++ V+ LL  GAN    DD+G     H + R  D  V + +  +++ + RT
Sbjct:  560 AKVTCVDRRRWNALHFAAEGGDTDVIDLILTHLPDIESKTAKGATPLIIAVCSGKLQGVKYLLERGANPLTKDDNGRDSLYHASSR--DPDVRDFLLSRVASSYRT 663
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BLAST of mRNA_E-fasciculatus_F_contig12765.2104.1 vs. uniprot
Match: UPI000C03E8C8 (ankyrin-3-like n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C03E8C8)

HSP 1 Score: 61.6 bits (148), Expect = 2.860e-7
Identity = 29/74 (39.19%), Postives = 48/74 (64.86%), Query Frame = 3 
Query:    3 ANLSAVTNRRMSALHLAAEGGDVDLVRMLLMAGAPLETRSSTGDTPLTLATYFGHVEAVEKLLAMGANANAIDD 224
            AN++ V N R++ALH AA+GGD D++ ++L     +E++++ G TPL +A   G + AV+  L  GAN   +D+
Sbjct:  218 ANVTCVDNNRLNALHCAAQGGDTDVIDLILTHLPDIESKTAEGHTPLMVAAANGKLHAVKWFLGKGANVTCVDN 291
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BLAST of mRNA_E-fasciculatus_F_contig12765.2104.1 vs. uniprot
Match: A0A2B4RQX9_STYPI (Ankyrin-2 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RQX9_STYPI)

HSP 1 Score: 61.6 bits (148), Expect = 3.640e-7
Identity = 29/74 (39.19%), Postives = 48/74 (64.86%), Query Frame = 3 
Query:    3 ANLSAVTNRRMSALHLAAEGGDVDLVRMLLMAGAPLETRSSTGDTPLTLATYFGHVEAVEKLLAMGANANAIDD 224
            AN++ V N R++ALH AA+GGD D++ ++L     +E++++ G TPL +A   G + AV+  L  GAN   +D+
Sbjct:  407 ANVTCVDNNRLNALHCAAQGGDTDVIDLILTHLPDIESKTAEGHTPLMVAAANGKLHAVKWFLGKGANVTCVDN 480
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BLAST of mRNA_E-fasciculatus_F_contig12765.2104.1 vs. uniprot
Match: UPI000C03FA30 (ankyrin repeat domain-containing protein 50-like n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C03FA30)

HSP 1 Score: 61.2 bits (147), Expect = 4.000e-7
Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 3 
Query:    3 ANLSAVTNRRMSALHLAAEGGDVDLVRMLLMAGAPLETRSSTGDTPLTLATYFGHVEAVEKLLAMGANANAIDDDG 230
            A ++ V  RR +ALH AAEGGD D++ ++L     +E++++ G TPL +A   G ++ V+ LL  GAN    DD+G
Sbjct:  385 AKVTCVDRRRWNALHFAAEGGDTDVIDLILTHLPDIESKTAKGATPLIIAVCSGKLQGVKYLLERGANPLTKDDNG 460
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BLAST of mRNA_E-fasciculatus_F_contig12765.2104.1 vs. uniprot
Match: UPI000C03ED61 (ankyrin-1-like n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C03ED61)

HSP 1 Score: 57.8 bits (138), Expect = 7.060e-6
Identity = 29/76 (38.16%), Postives = 48/76 (63.16%), Query Frame = 3 
Query:    3 ANLSAVTNRRMSALHLAAEGGDVDLVRMLLMAGAPLETRSSTGDTPLTLATYFGHVEAVEKLLAMGANANAIDDDG 230
            AN++ V N+R + LH+AAEGGD D++ ++      +E++++ G TPL LA   G + AV+  L  GA+   +D+ G
Sbjct:  379 ANVACVANKRRNMLHIAAEGGDTDVIDLIHSHLPNIESKTAEGYTPLMLAALSGKLYAVKWFLENGADVTCVDNIG 454
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BLAST of mRNA_E-fasciculatus_F_contig12765.2104.1 vs. uniprot
Match: UPI000C03BC14 (ankyrin repeat, PH and SEC7 domain containing protein secG-like n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C03BC14)

HSP 1 Score: 55.8 bits (133), Expect = 1.320e-5
Identity = 27/73 (36.99%), Postives = 46/73 (63.01%), Query Frame = 3 
Query:    6 NLSAVTNRRMSALHLAAEGGDVDLVRMLLMAGAPLETRSSTGDTPLTLATYFGHVEAVEKLLAMGANANAIDD 224
            N++ V N R + LH AA+GGD D++ ++L     +E++++ G TPL +A + G + AV+  L  GAN   +D+
Sbjct:  128 NVTCVHNDRWNMLHSAAQGGDTDVIGLILTHLPNIESKTAEGYTPLMVAAFNGKLPAVKWFLVKGANLTCVDN 200
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BLAST of mRNA_E-fasciculatus_F_contig12765.2104.1 vs. uniprot
Match: UPI001039F2A9 (uncharacterized protein LOC114359033 n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI001039F2A9)

HSP 1 Score: 57.0 bits (136), Expect = 1.380e-5
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 3 
Query:   33 MSALHLAAEGGDVDLVRMLLMAG-APLETRSSTGDTPLTLATYFGHVEAVEKLLAMGANANAIDDDGHVAGRW 248
            M+ALH+AA+GGDV+L   LL AG   +++R   G TPL  A    HV+ V  LL+ GA+A   D +G+    W
Sbjct: 1391 MTALHIAAQGGDVELCTALLEAGDVSVDSRDLGGWTPLVWAAENDHVDVVRLLLSRGADATTRDSEGNGCVHW 1463
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BLAST of mRNA_E-fasciculatus_F_contig12765.2104.1 vs. uniprot
Match: UPI001F3731F6 (ankyrin repeat domain-containing protein n=1 Tax=Campylobacter jejuni TaxID=197 RepID=UPI001F3731F6)

HSP 1 Score: 51.6 bits (122), Expect = 3.150e-5
Identity = 33/81 (40.74%), Postives = 44/81 (54.32%), Query Frame = 3 
Query:   33 MSALHLAAEGGDVDLVRMLLMAGAPLETRSSTGDTPLTLATYFGHVEAVEKLLAMGANANAIDDDGHVAGRWYDEAVAETV 275
            M+ALH AA    ++LV +LL AGA ++  S  G TPL  A   G+      LLA GA A+  D++G  A  W  E  A+ V
Sbjct:    1 MTALHQAAGWERLELVAVLLEAGAHVDAASDDGGTPLMAAAARGNAAIAALLLAHGAEADRRDEEGWNAWAWAIEKGAQDV 81
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12765.2104.1 vs. uniprot
Match: UPI001C8C0145 (ankyrin repeat domain-containing protein n=1 Tax=Lysobacter sp. BMK333-48F3 TaxID=2867962 RepID=UPI001C8C0145)

HSP 1 Score: 53.9 bits (128), Expect = 3.660e-5
Identity = 27/57 (47.37%), Postives = 35/57 (61.40%), Query Frame = 3 
Query:   51 AAEGGDVDLVRMLLMAGAPLETRSSTGDTPLTLATYFGHVEAVEKLLAMGANANAID 221
            AA  GD++ +R  L  GA    R   G+TPL LA Y+G+ +AVE LLA GA+ N  D
Sbjct:   46 AARAGDLERLRSALAEGASTSARDDRGNTPLILAAYYGNAQAVEALLAAGADPNVGD 102
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12765.2104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LJW4_ECTSI2.590e-3156.06Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A2B4RPN6_STYPI2.160e-734.91Putative ankyrin repeat protein n=1 Tax=Stylophora... [more]
UPI000C03E8C82.860e-739.19ankyrin-3-like n=1 Tax=Stylophora pistillata TaxID... [more]
A0A2B4RQX9_STYPI3.640e-739.19Ankyrin-2 n=1 Tax=Stylophora pistillata TaxID=5042... [more]
UPI000C03FA304.000e-740.79ankyrin repeat domain-containing protein 50-like n... [more]
UPI000C03ED617.060e-638.16ankyrin-1-like n=1 Tax=Stylophora pistillata TaxID... [more]
UPI000C03BC141.320e-536.99ankyrin repeat, PH and SEC7 domain containing prot... [more]
UPI001039F2A91.380e-543.84uncharacterized protein LOC114359033 n=1 Tax=Ostri... [more]
UPI001F3731F63.150e-540.74ankyrin repeat domain-containing protein n=1 Tax=C... [more]
UPI001C8C01453.660e-547.37ankyrin repeat domain-containing protein n=1 Tax=L... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12765contigE-fasciculatus_F_contig12765:299..1576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue4.8e-26
Seed eggNOG ortholog2880.D8LJW4
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size775
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12765.2104.1prot_E-fasciculatus_F_contig12765.2104.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12765 331..1202 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927783.2489913-UTR-E-fasciculatus_F_contig12765:298..3301622927783.2489913-UTR-E-fasciculatus_F_contig12765:298..330Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12765 299..330 +
1695995692.285064-UTR-E-fasciculatus_F_contig12765:298..3301695995692.285064-UTR-E-fasciculatus_F_contig12765:298..330Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12765 299..330 +
1622927783.297488-UTR-E-fasciculatus_F_contig12765:1202..15761622927783.297488-UTR-E-fasciculatus_F_contig12765:1202..1576Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12765 1203..1576 +
1695995692.3300786-UTR-E-fasciculatus_F_contig12765:1202..15761695995692.3300786-UTR-E-fasciculatus_F_contig12765:1202..1576Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12765 1203..1576 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927783.260275-CDS-E-fasciculatus_F_contig12765:330..3991622927783.260275-CDS-E-fasciculatus_F_contig12765:330..399Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12765 331..399 +
1695995692.304008-CDS-E-fasciculatus_F_contig12765:330..3991695995692.304008-CDS-E-fasciculatus_F_contig12765:330..399Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12765 331..399 +
1622927783.271985-CDS-E-fasciculatus_F_contig12765:628..7671622927783.271985-CDS-E-fasciculatus_F_contig12765:628..767Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12765 629..767 +
1695995692.3129578-CDS-E-fasciculatus_F_contig12765:628..7671695995692.3129578-CDS-E-fasciculatus_F_contig12765:628..767Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12765 629..767 +
1622927783.2853885-CDS-E-fasciculatus_F_contig12765:1041..12021622927783.2853885-CDS-E-fasciculatus_F_contig12765:1041..1202Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12765 1042..1202 +
1695995692.3214571-CDS-E-fasciculatus_F_contig12765:1041..12021695995692.3214571-CDS-E-fasciculatus_F_contig12765:1041..1202Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12765 1042..1202 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12765.2104.1

>prot_E-fasciculatus_F_contig12765.2104.1 ID=prot_E-fasciculatus_F_contig12765.2104.1|Name=mRNA_E-fasciculatus_F_contig12765.2104.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=123bp
MSALHLAAEGGDVDLVRMLLMAGAPLETRSSTGDTPLTLATYFGHVEAVE
KLLAMGANANAIDDDGHVAGRWYDEAVAETVKKQISKTLRTARKQRQGSS
IAVGEEAEMPDVEPDSSTGLLA*
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mRNA from alignment at E-fasciculatus_F_contig12765:299..1576+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12765.2104.1 ID=mRNA_E-fasciculatus_F_contig12765.2104.1|Name=mRNA_E-fasciculatus_F_contig12765.2104.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1278bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12765:299..1576+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGCGAACCTAAGCGCGGTGACTAACAGGCGCATGTCGGCGTTGCACCTT
GCCGCCGAGGGGGGCGACGTCGACCTGGTCCGCATGCTCCTCATGGCCGG
GGTAGGTGCCCCTTCGTGGATCGGGGGTGTATACTTATGTGTCAAGCCCG
CGCGTGTAGCATGTGGATCTACCTTCGTGATGATCCATGAGTTGGGTTTG
ATTCTCGGCTTTGGATGTGGAGAAAAGACTTCCCCTGGCTTGACAATAAC
AACGCCGAGCGAGTTCCCCCGTTCCGCCCCTCGCTACACCTCTCTCCGCC
CCTTTTGTTCGGTGCCTGGTGATGAGCTAGGCGCCGCTCGAGACCAGATC
GAGCACGGGTGATACTCCGCTAACCTTGGCCACTTATTTCGGGCACGTAG
AGGCGGTGGAAAAGCTGCTGGCCATGGGTGCCAACGCGAATGCCATCGAC
GACGACGGCCACGTCGCCGGTGAGGTACCACCTTAACGTGAAAAGTCCTT
TCTTCCGGTTGCTGCTCAGTACCCTATATCGTCCGTCCCGGTTCAACTGA
CCCGAACGCCTTTCGTGGTGGCAGGGCAAACTATCCCAAAAAGGGTACTA
CGCACTTTGAGAACCCAAAGGAAGAAGTAAGAAGGATGAAGGAAATCAGC
GGACTATTGGTTTCCACTCAAGGAGTTATGTTATCTTCCCAACCTATTTC
GTGCTCACGGCAATAGCTAAATACCCCTGCCCTATTTCGGCAGGTCGTTG
GTACGATGAGGCGGTGGCAGAGACGGTGAAGAAGCAGATCAGCAAGACTC
TACGAACCGCGCGGAAGCAGAGGCAGGGTAGTTCGATAGCCGTTGGCGAG
GAAGCGGAAATGCCGGACGTAGAGCCGGACAGCTCCACCGGTCTCTTGGC
ATGAAAGGCACCGGCCAGTTCGAAGAACGTAGTGCTGCCCTCGCGATGAT
GATACGCCTGCTACGTAGGGCGGGTCCGGGGTATCCGTGCGTCTATTCTT
GTATCTTTTGGAAAGGGGTAAGAAATAGGTCCCAAGGTCCAAAACATTGC
GTGAGCGTTTGCTGAGGAGCGGGAAATGCGCATGTATGATTACTTTTGAT
GTTGGTGGTCGTGATGTTTATGTATTCCAGATTCAGGCGGTAAGAGGGGA
AGAATCGCCCCACGGGAATTGTTTGCAAGAATCCCCTCCCCTCCCCTCCA
AATCGTCAGAAAAATAACATTTCAGGGGTCGTGCGCGTGCAAGTATCACT
GCGAATCATGTCCCCGAAGTCAGAAGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12765:299..1576+

>mRNA_E-fasciculatus_F_contig12765.2104.1 ID=mRNA_E-fasciculatus_F_contig12765.2104.1|Name=mRNA_E-fasciculatus_F_contig12765.2104.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=738bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12765:299..1576+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCGGCGTTGCACCTTGCCGCCGAGGGGGGCGACGTCGACCTGGTCCG
CATGCTCCTCATGGCCGGGATGTCGGCGTTGCACCTTGCCGCCGAGGGGG
GCGACGTCGACCTGGTCCGCATGCTCCTCATGGCCGGGGCGCCGCTCGAG
ACCAGATCGAGCACGGGTGATACTCCGCTAACCTTGGCCACTTATTTCGG
GCACGTAGAGGCGGTGGAAAAGCTGCTGGCCATGGGTGCCAACGCGAATG
CCATCGACGACGACGGCCACGTCGCCGGCGCCGCTCGAGACCAGATCGAG
CACGGGTGATACTCCGCTAACCTTGGCCACTTATTTCGGGCACGTAGAGG
CGGTGGAAAAGCTGCTGGCCATGGGTGCCAACGCGAATGCCATCGACGAC
GACGGCCACGTCGCCGGTCGTTGGTACGATGAGGCGGTGGCAGAGACGGT
GAAGAAGCAGATCAGCAAGACTCTACGAACCGCGCGGAAGCAGAGGCAGG
GTAGTTCGATAGCCGTTGGCGAGGAAGCGGAAATGCCGGACGTAGAGCCG
GACAGCTCCACCGGTCTCTTGGCATGAGTCGTTGGTACGATGAGGCGGTG
GCAGAGACGGTGAAGAAGCAGATCAGCAAGACTCTACGAACCGCGCGGAA
GCAGAGGCAGGGTAGTTCGATAGCCGTTGGCGAGGAAGCGGAAATGCCGG
ACGTAGAGCCGGACAGCTCCACCGGTCTCTTGGCATGA
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