mRNA_E-fasciculatus_F_contig12750.2094.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12750.2094.1
Unique NamemRNA_E-fasciculatus_F_contig12750.2094.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12750.2094.1 vs. uniprot
Match: A0A6H5KSL6_9PHAE (V-SNARE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSL6_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 2.970e-49
Identity = 92/93 (98.92%), Postives = 92/93 (98.92%), Query Frame = 1 
Query:   19 SRLSLQDSRRVLEETEGIGRGVMGDLESQRESLLRSRASVRDTGAAAGQARRLLGSISRRELRHRLCLYVVIALLSAAIVFVLYLKIRRRSLL 297
            SRLSLQDSRRVLEETEGIGRGVMGDLESQRESLLRSRASVRDTGAAAGQARRLLGSISRRELRHRLCLY VIALLSAAIVFVLYLKIRRRSLL
Sbjct:  152 SRLSLQDSRRVLEETEGIGRGVMGDLESQRESLLRSRASVRDTGAAAGQARRLLGSISRRELRHRLCLYAVIALLSAAIVFVLYLKIRRRSLL 244
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BLAST of mRNA_E-fasciculatus_F_contig12750.2094.1 vs. uniprot
Match: A0A835ZAL4_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAL4_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 5.680e-20
Identity = 50/92 (54.35%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:   10 ICRSRLSLQDSRRVLEETEGIGRGVMGDLESQRESLLRSRASVRDTGAAAGQARRLLGSISRRELRHRLCLYVVIALLSAAIVFVLYLKIRR 285
            + R+ +SL DSRRVL ETE +G  V+ DLE QR+SLLR+R + R+      +AR +L +I+RR+ RHRL LY +IA L  AI FVLYLK RR
Sbjct:  137 LARTAISLTDSRRVLAETEDVGARVVTDLEGQRQSLLRARDNAREISYDTVEAREVLRAIARRDARHRLALYAIIAALLCAIAFVLYLKFRR 228
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BLAST of mRNA_E-fasciculatus_F_contig12750.2094.1 vs. uniprot
Match: A0A484E001_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E001_BRELC)

HSP 1 Score: 71.2 bits (173), Expect = 9.250e-13
Identity = 42/97 (43.30%), Postives = 60/97 (61.86%), Query Frame = 1 
Query:    1 TKKICRSRLSLQDSRRVLEETEGIGRGVMGDLESQRESLLRSRASVRDTGAAAGQARRLLGSISRRELRHRLCLYVVIALLSAAIVFVLYLKIRRRS 291
            T ++ +S + L+D+ R++ ETE +G  V+  L SQRE LL S   VR+TGA   +ARRLL  ++RR L + + LY  I +L  AI +VLY    R S
Sbjct:  154 TDRLTQSSMKLEDTHRIVAETEEVGIAVLDTLASQRERLLESHDKVRETGAMLTEARRLLQRMTRRILTNTIVLYTTIFILGVAICYVLYADFIRTS 250
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BLAST of mRNA_E-fasciculatus_F_contig12750.2094.1 vs. uniprot
Match: A0A425D3Z1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425D3Z1_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.640e-12
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 1 
Query:   31 LQDSRRVLEETEGIGRGVMGDLESQRESLLRSRASVRDTGAAAGQARRLLGSISRRELRHRLCLYVVIALLSAAIVFVLYLKIRRRS 291
            L+ S+R+++ETE IG  VM  L  QRE+LL +   V+DT   AG ARR+L  +S+R L H+L L+ VI +L  AI  V Y    RR+
Sbjct:   45 LEQSKRIVQETEHIGISVMDTLAQQRETLLSAHDKVKDTRETAGDARRVLQRMSQRVLTHKLTLWFVIVVLVVAIALVFYHNFIRRA 131
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BLAST of mRNA_E-fasciculatus_F_contig12750.2094.1 vs. uniprot
Match: A0A024TJZ2_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TJZ2_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.670e-12
Identity = 43/97 (44.33%), Postives = 61/97 (62.89%), Query Frame = 1 
Query:    1 TKKICRSRLSLQDSRRVLEETEGIGRGVMGDLESQRESLLRSRASVRDTGAAAGQARRLLGSISRRELRHRLCLYVVIALLSAAIVFVLYLKIRRRS 291
            T ++ R+   L+ S+R+++ETE IG  VM  L  QRE+LL +   V+DT   AG ARR+L  +S+R L H+L L+ VI +L  AIV V Y    +RS
Sbjct:  126 TDRLQRASDQLEQSKRIVQETEQIGISVMDTLAQQRETLLSAHDKVKDTRETAGDARRVLQRMSQRMLTHKLTLWFVILVLIVAIVLVFYHDFIKRS 222
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BLAST of mRNA_E-fasciculatus_F_contig12750.2094.1 vs. uniprot
Match: W4GBV3_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GBV3_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.690e-12
Identity = 42/97 (43.30%), Postives = 60/97 (61.86%), Query Frame = 1 
Query:    1 TKKICRSRLSLQDSRRVLEETEGIGRGVMGDLESQRESLLRSRASVRDTGAAAGQARRLLGSISRRELRHRLCLYVVIALLSAAIVFVLYLKIRRRS 291
            T ++ R+   L+ S+R+++ETE IG  VM  L  QRE+LL +   V+DT   AG ARR+L  +S+R L H+L L+ VI +L  AI  V Y    RR+
Sbjct:  127 TDRLQRAXXXLEQSKRIVQETEHIGISVMDTLAQQRETLLSAHDKVKDTRETAGDARRVLQRMSQRVLTHKLTLWFVIVVLVVAIALVFYHNFIRRA 223
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BLAST of mRNA_E-fasciculatus_F_contig12750.2094.1 vs. uniprot
Match: A0A485K772_9STRA (Aste57867_208 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K772_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 8.930e-12
Identity = 40/90 (44.44%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:    1 TKKICRSRLSLQDSRRVLEETEGIGRGVMGDLESQRESLLRSRASVRDTGAAAGQARRLLGSISRRELRHRLCLYVVIALLSAAIVFVLY 270
            T ++ R+   L+ S+R+++ETE IG  VM  L  QRE+LL +   V+DT   AG ARR+L  +++R L H+L L+ VI +L AAI+ V Y
Sbjct:  123 TGRLQRASDQLEQSKRIVQETEQIGISVMDTLAQQRETLLSAHEKVKDTRETAGDARRVLQRMTQRVLTHKLTLWFVIVVLVAAILLVFY 212
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BLAST of mRNA_E-fasciculatus_F_contig12750.2094.1 vs. uniprot
Match: A0A662Y3N4_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y3N4_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 3.280e-11
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 1 
Query:   13 CRSRLS--LQDSRRVLEETEGIGRGVMGDLESQRESLLRSRASVRDTGAAAGQARRLLGSISRRELRHRLCLYVVIALLSAAIVFVLY 270
            CR R S  L+DS R++ ETE +G  V+  L  QRESLL +   VR+TGA   +ARR+L  ++RR + + + LY VI +L  AI +V+Y
Sbjct:  142 CRQRSSKTLEDSHRLVTETEEVGISVLDSLAQQRESLLGAHEKVRETGAMTTEARRILQRMTRRIITNTIVLYTVIFVLIVAICYVIY 229
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BLAST of mRNA_E-fasciculatus_F_contig12750.2094.1 vs. uniprot
Match: H3HAR8_PHYRM (V-SNARE domain-containing protein n=23 Tax=Phytophthora TaxID=4783 RepID=H3HAR8_PHYRM)

HSP 1 Score: 66.6 bits (161), Expect = 3.320e-11
Identity = 38/88 (43.18%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:    7 KICRSRLSLQDSRRVLEETEGIGRGVMGDLESQRESLLRSRASVRDTGAAAGQARRLLGSISRRELRHRLCLYVVIALLSAAIVFVLY 270
            ++ +S   L+D+ R++ ETE +G  V+  L  QRESLL +   VR+TGA A +ARR+L  ++RR + + + LY  I +L AAI +VLY
Sbjct:  123 RLTKSSKKLEDTHRIVAETEEVGITVLDTLAQQRESLLGAHEKVRETGAMATEARRILQRMTRRIITNTIVLYTTIFVLIAAICYVLY 210
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BLAST of mRNA_E-fasciculatus_F_contig12750.2094.1 vs. uniprot
Match: W2JIH7_PHYPR (Uncharacterized protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2JIH7_PHYPR)

HSP 1 Score: 65.1 bits (157), Expect = 8.400e-11
Identity = 36/88 (40.91%), Postives = 57/88 (64.77%), Query Frame = 1 
Query:    7 KICRSRLSLQDSRRVLEETEGIGRGVMGDLESQRESLLRSRASVRDTGAAAGQARRLLGSISRRELRHRLCLYVVIALLSAAIVFVLY 270
            ++ +S   L+D+ R++ ETE +G  V+  L SQRESLL +   VR+TGA   +ARR+L  ++RR + + + LY  I +L  AI +V+Y
Sbjct:   95 RLTKSSKKLEDTHRIVAETEEVGIAVLDTLASQRESLLGAHEKVRETGAMTTEARRILQRMTRRIITNTIVLYTTIFVLIVAICYVIY 182
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12750.2094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSL6_9PHAE2.970e-4998.92V-SNARE domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835ZAL4_9STRA5.680e-2054.35Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
A0A484E001_BRELC9.250e-1343.30Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A425D3Z1_9STRA1.640e-1245.98Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A024TJZ2_9STRA1.670e-1244.33t-SNARE coiled-coil homology domain-containing pro... [more]
W4GBV3_9STRA1.690e-1243.30t-SNARE coiled-coil homology domain-containing pro... [more]
A0A485K772_9STRA8.930e-1244.44Aste57867_208 protein n=1 Tax=Aphanomyces stellatu... [more]
A0A662Y3N4_9STRA3.280e-1145.45Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
H3HAR8_PHYRM3.320e-1143.18V-SNARE domain-containing protein n=23 Tax=Phytoph... [more]
W2JIH7_PHYPR8.400e-1140.91Uncharacterized protein n=6 Tax=Phytophthora paras... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12750contigE-fasciculatus_F_contig12750:218..517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.8
Seed ortholog evalue5.2e-39
Seed eggNOG ortholog2880.D8LHK7
Preferred nameVTI1A
KEGG koko:K08493,ko:K08494,ko:K10406,ko:K18749
KEGG Pathwayko04130,ko04138,map04130,map04138
GOsGO:0000139,GO:0000149,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000331,GO:0002576,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005767,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005776,GO:0005783,GO:0005789,GO:0005794,GO:0005798,GO:0005802,GO:0005829,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006887,GO:0006888,GO:0006891,GO:0006892,GO:0006896,GO:0006904,GO:0006906,GO:0006914,GO:0006996,GO:0007030,GO:0007033,GO:0007034,GO:0008021,GO:0008104,GO:0008150,GO:0008152,GO:0008200,GO:0008283,GO:0009056,GO:0009987,GO:0010008,GO:0010256,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016247,GO:0016248,GO:0016482,GO:0017081,GO:0019869,GO:0022406,GO:0030133,GO:0030134,GO:0030135,GO:0030136,GO:0030139,GO:0030141,GO:0030173,GO:0030424,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031091,GO:0031093,GO:0031201,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031901,GO:0031902,GO:0031974,GO:0031982,GO:0031983,GO:0031984,GO:0032010,GO:0032501,GO:0032588,GO:0032879,GO:0032880,GO:0032940,GO:0032991,GO:0033036,GO:0033267,GO:0033365,GO:0034613,GO:0034774,GO:0036477,GO:0042144,GO:0042147,GO:0042175,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043195,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043679,GO:0044237,GO:0044248,GO:0044297,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045055,GO:0045184,GO:0045202,GO:0045324,GO:0045335,GO:0046903,GO:0046907,GO:0048193,GO:0048278,GO:0048280,GO:0048284,GO:0048471,GO:0050789,GO:0050879,GO:0050881,GO:0050882,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051649,GO:0055037,GO:0055038,GO:0060205,GO:0060341,GO:0061024,GO:0061025,GO:0061919,GO:0065007,GO:0065009,GO:0070013,GO:0070382,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0090161,GO:0090174,GO:0097458,GO:0097576,GO:0097708,GO:0098588,GO:0098772,GO:0098791,GO:0098793,GO:0098796,GO:0098805,GO:0098827,GO:0098852,GO:0099106,GO:0099503,GO:0120025,GO:0120038,GO:0140029,GO:0140056,GO:0150034,GO:1903076,GO:1903827,GO:1904375,GO:1905475
EggNOG free text desc.vesicle fusion with Golgi apparatus
EggNOG OGsKOG1666@1,KOG1666@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04131,ko04812
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionSoluble NSF Attachment Protein (SNAP) Receptor (SNARE)
Ec32 orthologEc-10_002250.1
Exons1
Model size300
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927782.4328291-CDS-E-fasciculatus_F_contig12750:217..5171622927782.4328291-CDS-E-fasciculatus_F_contig12750:217..517Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12750 218..517 +
1695995691.823687-CDS-E-fasciculatus_F_contig12750:217..5171695995691.823687-CDS-E-fasciculatus_F_contig12750:217..517Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12750 218..517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12750.2094.1prot_E-fasciculatus_F_contig12750.2094.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12750 218..517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12750.2094.1

>prot_E-fasciculatus_F_contig12750.2094.1 ID=prot_E-fasciculatus_F_contig12750.2094.1|Name=mRNA_E-fasciculatus_F_contig12750.2094.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=100bp
TKKICRSRLSLQDSRRVLEETEGIGRGVMGDLESQRESLLRSRASVRDTG
AAAGQARRLLGSISRRELRHRLCLYVVIALLSAAIVFVLYLKIRRRSLL*
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mRNA from alignment at E-fasciculatus_F_contig12750:218..517+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12750.2094.1 ID=mRNA_E-fasciculatus_F_contig12750.2094.1|Name=mRNA_E-fasciculatus_F_contig12750.2094.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=300bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12750:218..517+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACAAAAAAAATATGCAGGAGCCGATTGAGTCTTCAAGACTCCCGAAGAGT
GCTGGAAGAGACGGAGGGCATCGGGCGCGGCGTCATGGGTGACCTGGAGT
CGCAGCGGGAGTCCCTCCTGCGCTCCAGGGCGAGCGTGCGAGACACCGGG
GCGGCCGCGGGGCAGGCGCGACGTCTTCTGGGGTCGATCTCCCGTCGGGA
GCTGAGACACCGGCTTTGCCTCTACGTGGTCATCGCCCTGCTGAGCGCGG
CGATCGTTTTCGTCCTTTACCTCAAGATACGACGGCGAAGTCTCTTGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12750:218..517+

>mRNA_E-fasciculatus_F_contig12750.2094.1 ID=mRNA_E-fasciculatus_F_contig12750.2094.1|Name=mRNA_E-fasciculatus_F_contig12750.2094.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=600bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12750:218..517+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACAAAAAAAATATGCAGGAGCCGATTGAGTCTTCAAGACTCCCGAAGAGT
GCTGGAAGAGACGGAGGGCATCGGGCGCGGCGTCATGGGTGACCTGGAGT
CGCAGCGGGAGTCCCTCCTGCGCTCCAGGGCGAGCGTGCGAGACACCGGG
GCGGCCGCGGGGCAGGCGCGACGTCTTCTGGGGTCGATCTCCCGTCGGGA
GCTGAGACACCGGCTTTGCCTCTACGTGGTCATCGCCCTGCTGAGCGCGG
CGATCGTTTTCGTCCTTTACCTCAAGATACGACGGCGAAGTCTCTTGTGA
ACAAAAAAAATATGCAGGAGCCGATTGAGTCTTCAAGACTCCCGAAGAGT
GCTGGAAGAGACGGAGGGCATCGGGCGCGGCGTCATGGGTGACCTGGAGT
CGCAGCGGGAGTCCCTCCTGCGCTCCAGGGCGAGCGTGCGAGACACCGGG
GCGGCCGCGGGGCAGGCGCGACGTCTTCTGGGGTCGATCTCCCGTCGGGA
GCTGAGACACCGGCTTTGCCTCTACGTGGTCATCGCCCTGCTGAGCGCGG
CGATCGTTTTCGTCCTTTACCTCAAGATACGACGGCGAAGTCTCTTGTGA
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