mRNA_E-fasciculatus_F_contig1275.2092.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1275.2092.1
Unique NamemRNA_E-fasciculatus_F_contig1275.2092.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1275.2092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1275contigE-fasciculatus_F_contig1275:12998..14818 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size280
Cds size276
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1275.2092.1prot_E-fasciculatus_F_contig1275.2092.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1275 13000..14818 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927781.9264834-CDS-E-fasciculatus_F_contig1275:12999..130671622927781.9264834-CDS-E-fasciculatus_F_contig1275:12999..13067Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1275 13000..13067 -
1695995691.5755348-CDS-E-fasciculatus_F_contig1275:12999..130671695995691.5755348-CDS-E-fasciculatus_F_contig1275:12999..13067Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1275 13000..13067 -
1622927781.9769526-CDS-E-fasciculatus_F_contig1275:13342..134171622927781.9769526-CDS-E-fasciculatus_F_contig1275:13342..13417Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1275 13343..13417 -
1695995691.5848837-CDS-E-fasciculatus_F_contig1275:13342..134171695995691.5848837-CDS-E-fasciculatus_F_contig1275:13342..13417Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1275 13343..13417 -
1622927781.990594-CDS-E-fasciculatus_F_contig1275:14127..141991622927781.990594-CDS-E-fasciculatus_F_contig1275:14127..14199Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1275 14128..14199 -
1695995691.597401-CDS-E-fasciculatus_F_contig1275:14127..141991695995691.597401-CDS-E-fasciculatus_F_contig1275:14127..14199Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1275 14128..14199 -
1622927782.0034218-CDS-E-fasciculatus_F_contig1275:14757..148181622927782.0034218-CDS-E-fasciculatus_F_contig1275:14757..14818Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1275 14758..14818 -
1695995691.6085763-CDS-E-fasciculatus_F_contig1275:14757..148181695995691.6085763-CDS-E-fasciculatus_F_contig1275:14757..14818Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1275 14758..14818 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1275.2092.1

>prot_E-fasciculatus_F_contig1275.2092.1 ID=prot_E-fasciculatus_F_contig1275.2092.1|Name=mRNA_E-fasciculatus_F_contig1275.2092.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=92bp
KELGECEALENVFLNGNSLQGEIPGKLRKLKNLKKMNLGNNQLKGPIPTE
MASMTKMEYLEVGGNTDLRAHRDLLDPISKLHRWAYRSGFEH
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mRNA from alignment at E-fasciculatus_F_contig1275:12998..14818-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1275.2092.1 ID=mRNA_E-fasciculatus_F_contig1275.2092.1|Name=mRNA_E-fasciculatus_F_contig1275.2092.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1821bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1275:12998..14818- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAAGAACTAGGAGAATGCGAAGCTCTGGAGAATGTGTTCCTCAACGGCAA
CAGCCTTCAAGGTAAGGTTCTTGTTGTGATATCAGTGCAGCTTGTCGTTC
GTATGCTTGCGGTTGTAGTTGACGGAAATGAACCAAGACGTTCGTAATCA
AGCTTTTAGCCACCAGTCTTATTTTGTTACAGATTCGCAACCTTTTTCGT
ATTGTCTTGTCGACTACAACCACAACATTCCCCACAAGATGCGAGTTCGC
GCTTGCTCGAGTGTTCACCTGGGCCGACATTTAGACCGTAGGAACCTTGC
TACCATCCACCTAAAGTGACCCAATAGTGTCGAAAGTTTACCCGAAGAAC
ACGATCTGTGGGGCACGGTGGAGCAACATTATTTTTAATTTCTTTTGGGG
GGACTGGGGAGCTGCTTGCGACATCGCGTACATCTGAATGCCAATGTCGT
ACAAAACGTCAAAAAGCAACAACCCTTCCCCGCAATGTATTCAAGCATGG
ATTCAACTCGAGCAAACATCGTAGCGAGAGAGTACATGCCGCGCCTGAAC
GAGGAGTCGCTTTTCAGTCGAACTGCATTTGCTTTGCGCTACCTCCTTCC
GTGCCCCTCCAACTCCAAGGGGAGATCCCGGGAAAGCTTAGGAAGCTGAA
GAATCTCAAGAAAATGAATCTTGGCAACAACCAACTCAAAGGTAAGAACT
TACAGCGTCACAACGAGGGTAAGTCCCGATATATTGAGGTATCTTCCCCT
TTCCGTGCGTCGTACAGAAGAGGTCCTGTTTGGGGTACGTGGATACGAGA
TCCGATTGGGGTAAATGTCTATTTGATTTGGTGTATTGGTATTTCTGGAC
GTTGTATTGGAGGAAGGGTTTCGTGGCGGGGGCGGCATCGGTGGTGACAG
ATCCTTCGGGCATTCACCTACAATGCCTCTTTGAGAGGTTGCACCTGACC
CACTTCAGACGGGCTTCCTGGCATGGTACTGCGGGCGACGTGTTGTTTCT
GGCAAGCATCCACCCTCTTGTCGAACTTATTGTTGGGAGGAGGCTGTACC
GCTACACGTTGCCGGCGACCAATCGCTGGAGAGCGAGTATGTGGCCGATT
GATTGCGTCACAGCCACGCAGCGTCACTCTGTAGTTCACCAAACTTGGCT
CTTGTCCCCGAGGAGGGTGACTCGCCAAATAGTGCTTAGAACCTTCTACG
CATAGTTTCTCCCGCCGTTTCTGTGTTTGCTGGAAAGGGTACCCGACGCC
GAGAGCAGTTACTATGGCGGAGAATACACACCCTTCGTATCTACCGTTAC
TTATTGGCATGATGGCCGAGCGCGGTGCAAAGTGGACAACTAATTGGACC
GTGACTTTTGCAGACAGCTGTTGCCTGTTGATTTCTTACCACGGTTTTCA
GGCCCCATACCGACGGAGATGGCTTCCATGACCAAGATGGAGTACCTCGA
AGTTGGCGGCAACACCGATCTCCGAGGTAACTAAATATGGACACGCCTTG
TACTCGGGTGTGTGGCATCCCCTTTCGAAACCCTCGGTGTATACAGCTAC
TTTCGCGGCCGGGTACGTGGAGTTTCCAGCAGCAGTCGTGGGAGATCATA
CTTGGCACCGACGGCATGGCAGTCGCCAGGTGTGGAAGGCTGACTCTCCC
ACAGCATTTGACGAAGACATGTGCCCCTCTATTAAACGACCACCGTTTGG
ATTTTTTTCGTCACGCTGGAAAAGCTCTGACTGTTTGTTTCCGCGTTCCA
GCTCATCGCGACCTTCTGGATCCGATAAGCAAGCTGCACAGGTGGGCATA
CCGTTCAGGGTTTGAGCATGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1275:12998..14818-

>mRNA_E-fasciculatus_F_contig1275.2092.1 ID=mRNA_E-fasciculatus_F_contig1275.2092.1|Name=mRNA_E-fasciculatus_F_contig1275.2092.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=552bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1275:12998..14818- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAAGAACTAGGAGAATGCGAAGCTCTGGAGAATGTGTTCCTCAACGGCAA
CAGCCTTCAAGAAAGAACTAGGAGAATGCGAAGCTCTGGAGAATGTGTTC
CTCAACGGCAACAGCCTTCAAGGGGAGATCCCGGGAAAGCTTAGGAAGCT
GAAGAATCTCAAGAAAATGAATCTTGGCAACAACCAACTCAAAGGGGAGA
TCCCGGGAAAGCTTAGGAAGCTGAAGAATCTCAAGAAAATGAATCTTGGC
AACAACCAACTCAAAGGCCCCATACCGACGGAGATGGCTTCCATGACCAA
GATGGAGTACCTCGAAGTTGGCGGCAACACCGATCTCCGAGGCCCCATAC
CGACGGAGATGGCTTCCATGACCAAGATGGAGTACCTCGAAGTTGGCGGC
AACACCGATCTCCGAGCTCATCGCGACCTTCTGGATCCGATAAGCAAGCT
GCACAGGTGGGCATACCGTTCAGGGTTTGAGCATCTCATCGCGACCTTCT
GGATCCGATAAGCAAGCTGCACAGGTGGGCATACCGTTCAGGGTTTGAGC
AT
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