mRNA_E-fasciculatus_F_contig1269.2051.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1269.2051.1
Unique NamemRNA_E-fasciculatus_F_contig1269.2051.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1269.2051.1 vs. uniprot
Match: D7G6W9_ECTSI (60S ribosomal protein L13a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W9_ECTSI)

HSP 1 Score: 383 bits (984), Expect = 1.950e-134
Identity = 193/198 (97.47%), Postives = 196/198 (98.99%), Query Frame = 1 
Query:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPSPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHGDLIKRLEAQRKIKSEAYYVEKKGAKQLKDKATAEANLAAVAPVLEEYGF 594
            MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIP+PYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPH +LIKRLEAQRKIKSEAYYV+KK AKQLKDKATAEANLAAVAPVLEEYGF
Sbjct:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHAELIKRLEAQRKIKSEAYYVDKKAAKQLKDKATAEANLAAVAPVLEEYGF 198
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BLAST of mRNA_E-fasciculatus_F_contig1269.2051.1 vs. uniprot
Match: A0A835Z9N1_9STRA (60S ribosomal protein L13a n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9N1_9STRA)

HSP 1 Score: 290 bits (742), Expect = 1.520e-97
Identity = 142/197 (72.08%), Postives = 170/197 (86.29%), Query Frame = 1 
Query:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPSPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHGDLIKRLEAQRKIKSEAYYVEKKGAKQLKDKATAEANLAAVAPVLEEYG 591
            + E PV VDGRGHLLGRLAS+VAK+LL GQKV+VVR EQI ISGSLVRNKVKY Q++KKR NTNP RGP+HFRSPARIFWRT+RGM+P KT RG+ A+ARL  FEGIP+P+DK+KRMVVP AL+V+R+APGR+ CVLGRLS EVGW HGDL++RLEA+RK++SEA+Y +KK   QL+ KA A A+L+AV PVLE YG
Sbjct:    2 VLEKPVVVDGRGHLLGRLASIVAKQLLSGQKVIVVRAEQIVISGSLVRNKVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMARLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHGDLVERLEAKRKVRSEAFYQKKKANAQLRVKAEAAADLSAVTPVLESYG 198
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BLAST of mRNA_E-fasciculatus_F_contig1269.2051.1 vs. uniprot
Match: A0A5J4Z3W8_PORPP (60S ribosomal protein L13a n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z3W8_PORPP)

HSP 1 Score: 258 bits (659), Expect = 6.300e-85
Identity = 128/197 (64.97%), Postives = 154/197 (78.17%), Query Frame = 1 
Query:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPSPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHGDLIKRLEAQRKIKSEAYYVEKKGAKQLKDKATAEANLAAVAPVLEEYG 591
            M+E+ V VD R HLLGRLAS+VAKELL GQKVVV RCE I +SG  +R K KY+ + +KR NTNP RGP+HFR+P+RIFWRTVRGMLP KT RG+EAL RL  FEGIP PYDK KRMVVP+AL+V+R+AP R+ CVLGRLS EVGW + D++ RLE +RK+ S AYY  KK   +LK KAT  A+L+ V PVLE +G
Sbjct:    1 MYESVVVVDARAHLLGRLASIVAKELLCGQKVVVTRCEAIEMSGRFIRKKNKYLMFLRKRMNTNPSRGPFHFRAPSRIFWRTVRGMLPHKTERGQEALGRLKVFEGIPPPYDKMKRMVVPDALRVVRLAPRRKHCVLGRLSHEVGWKYQDVLARLETKRKVHSAAYYQRKKALDKLKRKATESADLSKVTPVLEAFG 197
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BLAST of mRNA_E-fasciculatus_F_contig1269.2051.1 vs. uniprot
Match: A0A7S0LS12_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LS12_9EUKA)

HSP 1 Score: 256 bits (653), Expect = 4.500e-84
Identity = 126/183 (68.85%), Postives = 150/183 (81.97%), Query Frame = 1 
Query:   16 VTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPSPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHGDLIKRLEAQRKIKSEAYYVEKKGAKQLKDKATAEANLAA 564
            V +DG+GHLLGRL S++AK+LL G+KVVVVRCE + ISGSL RNKVKY Q+ KKR NTNP RGP+HFRSPARIFWRT+RGMLP KT RG+ ALARL+CFEGIP PYDKKKR+VVP+AL+ +R+   R F VLG LS+EVGW + DL+ +LEAQRKIK +AYY EKK    LK KA A A+L+A
Sbjct:   12 VVIDGKGHLLGRLCSIIAKQLLFGKKVVVVRCEALIISGSLTRNKVKYAQFMKKRMNTNPNRGPFHFRSPARIFWRTLRGMLPHKTVRGQSALARLACFEGIPEPYDKKKRVVVPSALKSLRLRADRNFTVLGELSKEVGWGYTDLVAKLEAQRKIKEQAYYAEKKAQVALKSKAAASADLSA 194
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BLAST of mRNA_E-fasciculatus_F_contig1269.2051.1 vs. uniprot
Match: F0Y3B4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3B4_AURAN)

HSP 1 Score: 256 bits (653), Expect = 5.330e-84
Identity = 128/197 (64.97%), Postives = 155/197 (78.68%), Query Frame = 1 
Query:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPSPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHGDLIKRLEAQRKIKSEAYYVEKKGAKQLKDKATAEANLAAVAPVLEEYG 591
            +F+  V VDGR H+LGRLAS++AKELL GQKVVVVRCEQ+ +SGSLVRNKVK+  + KKR NTNPKRGP H+RSPAR+ WRTVRGMLP KT RG++ALARL CFEG+P PYDK K+MVVP AL+V+R+ PGRRF VL RL+ E GW H  LI ++E +R  +S  +Y  KK A  LK KATA A+L+ VA VLE +G
Sbjct:    2 VFQDSVLVDGRTHMLGRLASIIAKELLCGQKVVVVRCEQLCVSGSLVRNKVKFTAFLKKRTNTNPKRGPIHYRSPARMLWRTVRGMLPHKTHRGQQALARLQCFEGVPPPYDKMKKMVVPEALKVLRLKPGRRFTVLARLASEFGWKHEALIAKMEEKRVARSAEFYAAKKSATALKAKATAAADLSKVADVLEAFG 198
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BLAST of mRNA_E-fasciculatus_F_contig1269.2051.1 vs. uniprot
Match: A0A7S1TQI9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQI9_9STRA)

HSP 1 Score: 255 bits (651), Expect = 1.070e-83
Identity = 127/199 (63.82%), Postives = 160/199 (80.40%), Query Frame = 1 
Query:    1 MFEAPVT-VDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPSPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHGDLIKRLEAQRKIKSEAYYVEKKGAKQLKDKATAEANLAAVAPVLEEYGF 594
            MF    T +D RGHLLGRLAS++AKELL GQKV VVRCE+I ++GSL+RNKVK+  Y++KRH TNPK+GP H+RSPAR+ WR VRGMLP KTARG+ ALARL+ FEGIP+PYDKKKR+VVP AL+V+R+ PGR+F VL  L+ EVGW H DLI+RLE +RK++++A+Y +KK A   K  ATA  +L+AV PVLE  G+
Sbjct:    1 MFSPNATLIDARGHLLGRLASIIAKELLCGQKVTVVRCEEICVTGSLLRNKVKWANYRRKRHLTNPKKGPIHYRSPARMLWRVVRGMLPHKTARGQAALARLATFEGIPAPYDKKKRVVVPEALKVLRLQPGRKFTVLKTLANEVGWKHKDLIERLENKRKLEAQAFYEKKKAAAAQKRAATAAVDLSAVTPVLEANGY 199
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BLAST of mRNA_E-fasciculatus_F_contig1269.2051.1 vs. uniprot
Match: W7TSL6_9STRA (60s ribosomal protein l13a n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSL6_9STRA)

HSP 1 Score: 255 bits (652), Expect = 1.210e-83
Identity = 127/196 (64.80%), Postives = 159/196 (81.12%), Query Frame = 1 
Query:   16 VTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPSPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHGDLIKRLEAQRKIKSEAYYVEKKG---AKQLKDKATAEANLAAVAPVLEEYGF 594
            V +DGRGHLLGRL+S+VAKELL GQKVVVVRCE++ ISG LVRN  +YMQ+ +KR NTNPKRGP+H+R+P+RI WRT+RGMLP KT RG +ALARL+ FEGIP+PYD KKR+VVP AL+++R+ PGRRFC L RL+ EVGW H DL+ RLEA+RKIK+EAYY +KK    AK L ++  A + L+AV  VL  +G+
Sbjct:    8 VVIDGRGHLLGRLSSIVAKELLSGQKVVVVRCEELMISGGLVRNHTRYMQFLRKRTNTNPKRGPFHYRAPSRILWRTIRGMLPHKTFRGAQALARLTTFEGIPAPYDTKKRVVVPQALKILRLKPGRRFCTLSRLAHEVGWGHRDLVARLEAKRKIKAEAYYQQKKAGTAAKALAERKAA-SELSAVNNVLAGFGY 202
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BLAST of mRNA_E-fasciculatus_F_contig1269.2051.1 vs. uniprot
Match: A0A7S2DZL3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2DZL3_9STRA)

HSP 1 Score: 254 bits (649), Expect = 2.240e-83
Identity = 128/200 (64.00%), Postives = 157/200 (78.50%), Query Frame = 1 
Query:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPSPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHGDLIKRLEAQRKIKSEAYYVEKKGAKQLKDKA--TAEANLAAVAPVLEEYGF 594
            M E  + VDGR HLLGRLASVVAKELL GQKVV+VRC+Q+ ISGSLVRNKVKY Q++KKR NTNP +GPYHF+SPA++ WRT+RGM  +KTARG+EALARLS FEGIP PYDKKKR V+P AL+V+R+ P R + VLG L+  VGW H DL+KRLE +RK+++ A+Y +KK   QL++KA   A   LA V  VLE  G+
Sbjct:    1 MLENTIIVDGRDHLLGRLASVVAKELLSGQKVVIVRCDQVCISGSLVRNKVKYAQFRKKRMNTNPSKGPYHFKSPAKMVWRTIRGMCHQKTARGQEALARLSTFEGIPHPYDKKKRQVIPAALRVMRLKPSRNYTVLGELANAVGWKHQDLLKRLEDKRKVRAAAFYEKKKAKTQLREKAEKAAAGELAKVNEVLEASGY 200
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BLAST of mRNA_E-fasciculatus_F_contig1269.2051.1 vs. uniprot
Match: A0A7S1TDT8_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TDT8_9RHOD)

HSP 1 Score: 254 bits (648), Expect = 2.970e-83
Identity = 124/198 (62.63%), Postives = 154/198 (77.78%), Query Frame = 1 
Query:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPSPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHGDLIKRLEAQRKIKSEAYYVEKKGAKQLKDKATAEANLAAVAPVLEEYGF 594
            MF  PV VDGRGHLLGRLAS VAKELL GQ+VVVVRCE I  SG  +RNK KY+ + +KR NTNP RGP HFRSP+++FWRTVRGMLP KT RG +ALARL  FEGIP+PYDK KRMVVPNAL+V+R+ P R++C LGR++ EVGW + D++ RLEA+RK+ SEAYY +KK   +L+ +A A A +  +   L+ YG+
Sbjct:    1 MFSGPVVVDGRGHLLGRLASTVAKELLNGQQVVVVRCEDIDQSGKFIRNKNKYLIFLRKRMNTNPTRGPIHFRSPSKMFWRTVRGMLPHKTQRGADALARLKVFEGIPAPYDKTKRMVVPNALRVLRLRPDRKYCRLGRIASEVGWKYADVVDRLEAKRKVSSEAYYEKKKAEGKLRVQAKANAAIQEMETKLQNYGY 198
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BLAST of mRNA_E-fasciculatus_F_contig1269.2051.1 vs. uniprot
Match: A0A6V1NQ00_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NQ00_HETAK)

HSP 1 Score: 252 bits (644), Expect = 1.200e-82
Identity = 130/198 (65.66%), Postives = 156/198 (78.79%), Query Frame = 1 
Query:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPSPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHGDLIKRLEAQRKIKSEAYYVEKKGAKQLKDKATAEANLAAVAPVLEEYGF 594
            MFE  V VDGRGHLLGRLAS+VAK+LL GQKVV+VR E+I +SGSL+R K ++ Q+ KKR NTNPKRGP HFRSPA+IFWRTVRGM+P KT RG  A+ARL CFEGIP P+DKKKRMVVP AL+V+R+   R+   LG L+ EVGW    LI+RLEA+RKI+S+AYY++KK A  LK KA AEA+L+ VA VL   G 
Sbjct:    1 MFEDTVVVDGRGHLLGRLASIVAKQLLCGQKVVLVRAEEIVMSGSLIRKKTQFAQWLKKRTNTNPKRGPIHFRSPAKIFWRTVRGMIPHKTVRGTAAMARLQCFEGIPHPWDKKKRMVVPEALKVLRLKAHRKNTKLGTLAGEVGWEKAGLIERLEAKRKIRSQAYYLKKKAAVVLKTKAAAEADLSPVAAVLAPLGM 198
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1269.2051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6W9_ECTSI1.950e-13497.4760S ribosomal protein L13a n=2 Tax=Ectocarpus TaxI... [more]
A0A835Z9N1_9STRA1.520e-9772.0860S ribosomal protein L13a n=1 Tax=Tribonema minus... [more]
A0A5J4Z3W8_PORPP6.300e-8564.9760S ribosomal protein L13a n=1 Tax=Porphyridium pu... [more]
A0A7S0LS12_9EUKA4.500e-8468.85Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
F0Y3B4_AURAN5.330e-8464.97Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S1TQI9_9STRA1.070e-8363.82Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
W7TSL6_9STRA1.210e-8364.8060s ribosomal protein l13a n=1 Tax=Nannochloropsis... [more]
A0A7S2DZL3_9STRA2.240e-8364.00Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S1TDT8_9RHOD2.970e-8362.63Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A6V1NQ00_HETAK1.200e-8265.66Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1269contigE-fasciculatus_F_contig1269:877..5217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score384.4
Seed ortholog evalue3.2e-104
Seed eggNOG ortholog2880.D7G6W9
Preferred nameRPL13A
KEGG rclassRC01978
KEGG koko:K02872,ko:K03644
KEGG ReactionR07767,R07768
KEGG Pathwayko00785,ko01100,ko03010,map00785,map01100,map03010
KEGG ModuleM00177
GOsGO:0000184,GO:0000956,GO:0002181,GO:0002237,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006928,GO:0006935,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007275,GO:0007423,GO:0008104,GO:0008150,GO:0008152,GO:0008407,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009653,GO:0009719,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010212,GO:0010224,GO:0010243,GO:0010332,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0014074,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0016477,GO:0017148,GO:0019222,GO:0019439,GO:0019538,GO:0022416,GO:0022625,GO:0022626,GO:0023052,GO:0030323,GO:0030324,GO:0030595,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0032268,GO:0032269,GO:0032496,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0033993,GO:0034097,GO:0034248,GO:0034249,GO:0034341,GO:0034613,GO:0034641,GO:0034644,GO:0034645,GO:0034655,GO:0035295,GO:0040011,GO:0042221,GO:0042330,GO:0042592,GO:0042886,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043603,GO:0043604,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045087,GO:0045184,GO:0045947,GO:0046483,GO:0046683,GO:0046700,GO:0046907,GO:0048246,GO:0048513,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0048870,GO:0050789,GO:0050794,GO:0050896,GO:0050900,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051591,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060326,GO:0060425,GO:0060541,GO:0065007,GO:0065008,GO:0070727,GO:0070887,GO:0070972,GO:0071214,GO:0071310,GO:0071320,GO:0071345,GO:0071346,GO:0071407,GO:0071417,GO:0071478,GO:0071479,GO:0071480,GO:0071482,GO:0071493,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0097452,GO:0097529,GO:0104004,GO:1901193,GO:1901194,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1904688,GO:1904689,GO:1905517,GO:1990904,GO:2000112,GO:2000113,GO:2000765,GO:2000766
EggNOG free text desc.Belongs to the universal ribosomal protein uL13 family
EggNOG OGsCOG0102@1,KOG3204@2759
EC2.8.1.8
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L13, eukaryotic/archaeal
Ec32 orthologEc-01_011950.1
Exons5
Model size597
Cds size597
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1269.2051.1prot_E-fasciculatus_F_contig1269.2051.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1269 877..5217 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927775.781856-CDS-E-fasciculatus_F_contig1269:876..10051622927775.781856-CDS-E-fasciculatus_F_contig1269:876..1005Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1269 877..1005 -
1695995688.9553096-CDS-E-fasciculatus_F_contig1269:876..10051695995688.9553096-CDS-E-fasciculatus_F_contig1269:876..1005Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1269 877..1005 -
1622927775.796184-CDS-E-fasciculatus_F_contig1269:2569..27311622927775.796184-CDS-E-fasciculatus_F_contig1269:2569..2731Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1269 2570..2731 -
1695995688.9676332-CDS-E-fasciculatus_F_contig1269:2569..27311695995688.9676332-CDS-E-fasciculatus_F_contig1269:2569..2731Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1269 2570..2731 -
1622927775.8130887-CDS-E-fasciculatus_F_contig1269:3267..33271622927775.8130887-CDS-E-fasciculatus_F_contig1269:3267..3327Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1269 3268..3327 -
1695995688.9768298-CDS-E-fasciculatus_F_contig1269:3267..33271695995688.9768298-CDS-E-fasciculatus_F_contig1269:3267..3327Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1269 3268..3327 -
1622927775.8259888-CDS-E-fasciculatus_F_contig1269:4299..44091622927775.8259888-CDS-E-fasciculatus_F_contig1269:4299..4409Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1269 4300..4409 -
1695995688.985387-CDS-E-fasciculatus_F_contig1269:4299..44091695995688.985387-CDS-E-fasciculatus_F_contig1269:4299..4409Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1269 4300..4409 -
1622927775.8409498-CDS-E-fasciculatus_F_contig1269:5081..52171622927775.8409498-CDS-E-fasciculatus_F_contig1269:5081..5217Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1269 5082..5217 -
1695995688.9936585-CDS-E-fasciculatus_F_contig1269:5081..52171695995688.9936585-CDS-E-fasciculatus_F_contig1269:5081..5217Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1269 5082..5217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1269.2051.1

>prot_E-fasciculatus_F_contig1269.2051.1 ID=prot_E-fasciculatus_F_contig1269.2051.1|Name=mRNA_E-fasciculatus_F_contig1269.2051.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=199bp
MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNK
VKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALAR
LSCFEGIPSPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHGD
LIKRLEAQRKIKSEAYYVEKKGAKQLKDKATAEANLAAVAPVLEEYGF*
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mRNA from alignment at E-fasciculatus_F_contig1269:877..5217-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1269.2051.1 ID=mRNA_E-fasciculatus_F_contig1269.2051.1|Name=mRNA_E-fasciculatus_F_contig1269.2051.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4341bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1269:877..5217- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTCGAGGCACCCGTTACCGTGGATGGCCGCGGCCACCTGCTCGGGCG
CCTGGCGTCCGTCGTGGCGAAGGAGCTGCTTGGCGGCCAGAAGGTGGTCG
TCGTGCGGTGCGAGCAGATCACCATCAGCGGCTCTCGTGAGTTACCACCC
CCATGATGCTCTTGCTCGTGTTGATCGCTTGTTCCCTCACCCGATGCCCT
GAGAGAGCTAGCTCACCAGGCTCCCTTGCCCACATGCTGAACGAAGAAAG
CATTGTGTGCGAGTTGGGGTTGCGACGTTGGGTTTGAGAGTAGAGCAACA
GAGGGTGCATTGGCCTGTTTTTGGGTTGGAGAGGAAATCGACTCGGCATT
GACTTGTCGTAGGTTCGTGGTGACCAGTCGATGCGATGTGGCAACCGCGA
TGCAAGGCGTTCCTCGAACAGCGGCAGCCGTCTTGCCAAGCGGTGCACGT
CCGCTGCTAGCAGCATGTCCATGGTGCAAGGCTGGTTGTATTCCTGATGA
TGGTGTTGGTTGTTTGGAAAGCTCACACAGCTCACGTTGTGCCTTCCATG
TGCTTCGAAACAACAGCAGCAGTCTGCTGTTTGTTGAGTCTCAGCGAAAA
GAGGTTGTTGGAGGAGAGGCAAACACCGATGTGCCTCCCGCTGCGATCCA
TCCGGCCCTCCATCTTCTAGCTAGTAGGGTAAAAGGCTTGCCCACAGGGA
GTGCAATTGTTGATTTGGTAGGATAGCAAATGTAATATTACACCGATAGC
TTTTCTGTGACCCTTGACGCCCAACTCTCCCGTCCCTCCATGATCGATCG
CATGGCAGTGGTCCGTAACAAGGTGAAGTACATGCAGTACAAGAAGAAGA
GGCACAACACCAACCCCAAGCGCGGCCCGTACCACTTCCGCTCGCCTGCC
CGCATCTTCTGGCGGACGGTGAGCCTCGTCGCTTTGTGCAGGAGCAGCTG
CAAGTGCTTGTGTAGTTATAGTTAACCCACACACACTTTGCCACCTTGTC
TATGCCCTGTGTTTATATTGTAAAGCAGTACTATCCGCCATGTAGTTACG
CTGCTGCTGCGAATGGTATCGGTGCAGCGTTTTGGGGTGGAGTGCTCAAG
AACGCACTGCCGCCTTTGTGTGTGTGTAGAACCGGGTGTTGAAGCCGTGA
CTCCCCTTCCCCCACGTCTAATCTTGCTTTTGCACTTAAGGTCAGTCGTG
GTACCATGAGTATATACGTACTTATATTAGAGTCGCGTAGACTCCTGACT
CTTGGCCATTTTGGGTACAGTACGGCTGCCCTTGACCGACCCACGACGGA
GTGTAGGCTCTTTCGAAACCTCATGTACCCGGTGAATCTTTCATGTACAG
TATGCATGTGGTAGTGCAAAGAAATGCATCTCAAATATCGAGATTGCAGC
AGCAGAAGTGTTCGCCGGTCCGATCGTGCGGGCGGTCATCCTGAGAACGC
ACATAGTCTAATCGAAGTTCCAGTGCTGCGTTGACTGGTAGACTGACTGC
CGTGCAGTGGTGTCGTTCACCACAACCGGTTTGTCTACAACGGGGCCAGT
TTACAGTTTACAGAGCCGGATGACAACATTTACAGAGCCTTTGCGAAAGT
GTATTTACCCCTGTCTGCATCTCTTGTAGGCCCTCCTCCCTGGGCCGAGA
GAGGTTGGTCCACCCTTGTCTGCACCGCTTGTATGCTTGTATAGTATATC
CCCCTCACTGGCTTGTCGAAAAACCCAATGGGGGAAGATTAAGATTCCCC
CTGCACCGCTCTTCCCCCCCGGGGGACGAGAAGTCAACATCTGCCCTACC
ATGGTTCGGGTGCGACGAACCTCGGTAGCAATCGTTCTGACTGTCGCTAC
GTTTCTGGCGGCTGTGTGCTTCGTGCTTTTGTAACGACAGGTGAGGGGAA
TGCTCCCCCGCAAGACTGCCAGGGGCGAGGAGGCGCTTGCACGCCTCTCG
GTAAGCAATCAATCAGCCAATACTTGTTTGACAAGAGGGCCACATGGCTG
AAATCGGAAGTGCATTGCATGGGCTGTTGGCTAACCGCACGTGGTCGAGA
GCTGGAAACGTGGTGCTTGTTAAAATCTAACGTGATTGATGTTTTCGTTT
GATATGCATTGAAGATCTAGGCGGCGGAGTGCTGATCGCCGCTATAGTGC
TGCCTGATCCCGCCGCTTGACAGCTGTGGTGGCTGTGTAGACAATGTTTC
TGCCAGAGTATGGTGTCTAGTACATGATTTGCCGTTTTTTTGCGCAGAAG
GCAGTAAAGTTGGGATAGTAGTGGCAGCAGTAGCAGCAGGAGGGAGCCCT
CTCTCTCGTCTGCCGGAAACCGCATGTTGTAAGCCTTCATCACGATCTTG
TAGACTCTGCTAGCCCCCGGCCGGTTGCTATGGGGCTCATTCCGACGCGC
CTGATGTGGAATATTTCTCCCTTCGCTCCAACGCTACCTGTCCTGGCGTG
ACATGTTGCTGCCAAATCTGTTGCTGTTTCTTGCAGTGCTTCGAGGGCAT
CCCGTCACCCTACGACAAGAAGAAGCGTATGGTCGTACCCAACGCCCTTC
AGGTGATCAGGATGGCGCCCGGCCGCCGCTTCTGCGTGCTCGGACGCCTC
TCTGAGGAGGTCGGATGGCCGCACGGAGACCTCATCAAGCGCCTCGAGGT
AAGCAACACCAAAAGTGTGATCGATCGCTGAGTCTACGATACAGGACGTA
CCAAGGGATGCTAGATGCCAGCTTTTCATTGTTGTGGCGATACGTACAGC
GGCTTTCGATTGTGGGGCTATTTCATGGACAGTATCATGATTTGGAGAAG
GAGAGGTCCTGTGGCTTAAGTTTGCTTCACTGGAAAAACCAGGATACATG
AACTTTGTATACGCCGCGTAAGACAAACAGAACGCTGTTGGTGCCTGTTG
CTTTACGGCAAAGAGCGCGGAAATTGATATTCACATGCAAGAGAGCCGAT
AGTCTGCTTGATGCTGGAAACGTTGTTGGAAAAACGCTACAATACCGCCC
TGCAACTGTCCCGAGGCATGGTATACCTGGACGAAAGTCGTGCGTGTATG
ACTGGGTACACCCGAGTTGATTCTAGTGACACGGGTGAACAGCAATGCAC
CCTTACCCTTACGAATGGAAACATGGCGTTTTATTGGCGCTACTGCGATT
TTTATTGCTAGCCTTAACCTTTGACCTGCTGGGGTACCTCGTCAGCCTGT
TGTCGTCATAATCTTGCTGACCGTAGATGACCGTAGAGTACGGTCGAGTC
CTCCCGCTCTTGTCCGGTGGTTTGATATCCAAGTTTAGTCCGTGACGCCT
GCCTTCCAAAATGATTAGGACGCTTTACAACACAAGACGTAGAACTACTG
TTACCTCTTGTTCGTCTACGTAGCCGGACTGCGGAGCAATGCGAGCAGTG
CGTGCACATGTCACTGATGCGGTGGTTGTACCCTGACTTGGGAGCACTAT
GCGAAGTATGCGAAGCTGCTTGACCTCCTCTGCCGGTGCCAGAGTATTTC
GTCGTGTTGATGCACGCACGCGCACCGCGTTGCTGCAGAACTATCCTCGA
ATGTATGTACTTGACACGATGTCGTGGGTGGGGTCTACATGTACTGATCG
CATTTTCGCGTGGCGCGAATTCCACATTTGCAAGGGTTGTTAGCTAGGCT
ATTATAGGTGGCCAGCCGTTGTATTCCAAGTTTTCTTCTGATGATGTGAT
GGTGGCGTACTACATCAGTGTTCTTTGAGTCCATCCCTATTCGTCGGGAA
TTGTAGCAGAATATGGTGGTCCCCTCTTGACGAACGAACATCACGCGTGC
CGGAAGCACCACGGCTCGTACGGAAGAGACGGTGATGGTGGTGTGACATT
TAGCTGCTCTAAACGATGACAGACACTGCTGTATCAAGCCGTCACCTGTA
GAGTACCGCGCTGCTTACCGGACCCTGAGGATCGATGCCAATTCTTAGCG
GTTGCGTGAGGCCGAGCATTTGCTCCATTGGAGTGTTTGAGACCGCTCTA
CTTTTGACAGGAGCACGTCGCCAGTCTTCTGTTTTTTCGTAGCTTGTCGA
GTTGGGTTCGTTTCGCCCTTTGCTGCGCTCTGATCCTGTGTTTACCGTGA
TGTATCTTCCAGGTCAGCACACCTCCAAGCAACGAACCAACCAGCAAGTG
CAACTTTCTTTAACTTACGTTGTTTCTCTTCCCTCCCTCCTGCCCCCGAA
TTTTCGTTTCAGGCCCAGCGCAAGATCAAGTCCGAGGCGTACTACGTGGA
GAAGAAGGGGGCCAAGCAGCTCAAGGACAAGGCCACGGCAGAGGCCAACT
TGGCTGCCGTCGCGCCCGTGCTCGAGGAGTATGGCTTCTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1269:877..5217-

>mRNA_E-fasciculatus_F_contig1269.2051.1 ID=mRNA_E-fasciculatus_F_contig1269.2051.1|Name=mRNA_E-fasciculatus_F_contig1269.2051.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1194bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1269:877..5217- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTCGAGGCACCCGTTACCGTGGATGGCCGCGGCCACCTGCTCGGGCG
CCTGGCGTCCGTCGTGGCGAAGGAGCTGCTTGGCGGCCAGAAGGTGGTCG
TCGTGCGGTGCGAGCAGATCACCATCAGCGGCTCTCATGTTCGAGGCACC
CGTTACCGTGGATGGCCGCGGCCACCTGCTCGGGCGCCTGGCGTCCGTCG
TGGCGAAGGAGCTGCTTGGCGGCCAGAAGGTGGTCGTCGTGCGGTGCGAG
CAGATCACCATCAGCGGCTCTCTGGTCCGTAACAAGGTGAAGTACATGCA
GTACAAGAAGAAGAGGCACAACACCAACCCCAAGCGCGGCCCGTACCACT
TCCGCTCGCCTGCCCGCATCTTCTGGCGGACGTGGTCCGTAACAAGGTGA
AGTACATGCAGTACAAGAAGAAGAGGCACAACACCAACCCCAAGCGCGGC
CCGTACCACTTCCGCTCGCCTGCCCGCATCTTCTGGCGGACGGTGAGGGG
AATGCTCCCCCGCAAGACTGCCAGGGGCGAGGAGGCGCTTGCACGCCTCT
CGGTGAGGGGAATGCTCCCCCGCAAGACTGCCAGGGGCGAGGAGGCGCTT
GCACGCCTCTCGTGCTTCGAGGGCATCCCGTCACCCTACGACAAGAAGAA
GCGTATGGTCGTACCCAACGCCCTTCAGGTGATCAGGATGGCGCCCGGCC
GCCGCTTCTGCGTGCTCGGACGCCTCTCTGAGGAGGTCGGATGGCCGCAC
GGAGACCTCATCAAGCGCCTCGAGTGCTTCGAGGGCATCCCGTCACCCTA
CGACAAGAAGAAGCGTATGGTCGTACCCAACGCCCTTCAGGTGATCAGGA
TGGCGCCCGGCCGCCGCTTCTGCGTGCTCGGACGCCTCTCTGAGGAGGTC
GGATGGCCGCACGGAGACCTCATCAAGCGCCTCGAGGCCCAGCGCAAGAT
CAAGTCCGAGGCGTACTACGTGGAGAAGAAGGGGGCCAAGCAGCTCAAGG
ACAAGGCCACGGCAGAGGCCAACTTGGCTGCCGTCGCGCCCGTGCTCGAG
GAGTATGGCTTCTAAGCCCAGCGCAAGATCAAGTCCGAGGCGTACTACGT
GGAGAAGAAGGGGGCCAAGCAGCTCAAGGACAAGGCCACGGCAGAGGCCA
ACTTGGCTGCCGTCGCGCCCGTGCTCGAGGAGTATGGCTTCTAA
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