mRNA_E-fasciculatus_F_contig12674.2042.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12674.2042.1
Unique NamemRNA_E-fasciculatus_F_contig12674.2042.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12674.2042.1 vs. uniprot
Match: A0A6H5KTD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD5_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.810e-17
Identity = 70/110 (63.64%), Postives = 77/110 (70.00%), Query Frame = 2 
Query:  593 TLPEGLARPSATAAQLLLLLLLASLPPLLVRLVHLPLMLQLGVAPPPLLLRAEPKLA--PSLIRLPLLRPTAVVGQGGRRWARLRVTATTARSG**DILDPVEKLQSPPG 916
            TLPEGLA P   A QLLLL  LA L PL+VRL HLPL LQLG+ PPPLL RAEPKL   PSL+RLPL RPTAV  +G RRWA+L  T  TA+ G   I  PV +  SPPG
Sbjct: 1121 TLPEGLATPPG-AVQLLLL--LAPLVPLVVRLAHLPLTLQLGMVPPPLLRRAEPKLKYQPSLVRLPLPRPTAV-RRGDRRWAKLLATVMTAKCGGTYIRAPVWEF-SPPG 1225
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12674.2042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KTD5_9PHAE1.810e-1763.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12674contigE-fasciculatus_F_contig12674:1901..3876 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_001910.2
Exons2
Model size1720
Cds size861
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12674.2042.1prot_E-fasciculatus_F_contig12674.2042.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12674 2758..3876 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927774.7340124-UTR-E-fasciculatus_F_contig12674:1900..27571622927774.7340124-UTR-E-fasciculatus_F_contig12674:1900..2757Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12674 1901..2757 -
1695995688.4259334-UTR-E-fasciculatus_F_contig12674:1900..27571695995688.4259334-UTR-E-fasciculatus_F_contig12674:1900..2757Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12674 1901..2757 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927774.7488835-CDS-E-fasciculatus_F_contig12674:2757..30271622927774.7488835-CDS-E-fasciculatus_F_contig12674:2757..3027Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12674 2758..3027 -
1695995688.433943-CDS-E-fasciculatus_F_contig12674:2757..30271695995688.433943-CDS-E-fasciculatus_F_contig12674:2757..3027Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12674 2758..3027 -
1622927774.7626588-CDS-E-fasciculatus_F_contig12674:3285..38761622927774.7626588-CDS-E-fasciculatus_F_contig12674:3285..3876Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12674 3286..3876 -
1695995688.445403-CDS-E-fasciculatus_F_contig12674:3285..38761695995688.445403-CDS-E-fasciculatus_F_contig12674:3285..3876Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12674 3286..3876 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12674.2042.1

>prot_E-fasciculatus_F_contig12674.2042.1 ID=prot_E-fasciculatus_F_contig12674.2042.1|Name=mRNA_E-fasciculatus_F_contig12674.2042.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=287bp
VSPRGRKRPADSISDAKAGARKGKKIAQETGQQPSPSGEGTRTAAAASAA
VESSAAATTTTPRVAVGAAAKNREAAETGTSPLRGDASSSSSARPCLRVS
SGRNDPAPGTSPGEISKATAASTRPSSPLPEASAEAPPLAVGGAVKEGGA
RASAVAAGGGGGRFDATTSIGAGVGDTSSDSGSEDDASAGAGGPGRNDIT
GGPGKTVGNSRTAPPPPPPGLAPTPASATRASAADAAVGGGTSPSSSSSR
TQAGAVSDTSAAAAANSSGGAGGQEMGETSSDSDDG*
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mRNA from alignment at E-fasciculatus_F_contig12674:1901..3876-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12674.2042.1 ID=mRNA_E-fasciculatus_F_contig12674.2042.1|Name=mRNA_E-fasciculatus_F_contig12674.2042.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1976bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12674:1901..3876- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTATCGCCGCGTGGGAGAAAGCGCCCGGCGGACAGCATCTCAGACGCTAA
GGCGGGCGCTAGGAAGGGAAAGAAAATCGCACAAGAAACGGGGCAGCAGC
CCTCCCCCTCCGGCGAGGGTACGAGGACCGCTGCCGCCGCCTCCGCGGCG
GTCGAATCCAGCGCCGCGGCCACAACAACAACACCGCGGGTAGCTGTGGG
TGCCGCTGCGAAGAACAGAGAGGCAGCGGAGACGGGTACCTCACCCTTGC
GAGGCGATGCCAGCTCGTCATCATCAGCACGGCCATGCCTTCGTGTATCG
TCTGGTCGCAATGATCCCGCTCCCGGTACTTCCCCCGGTGAAATCTCCAA
GGCAACTGCGGCTAGTACCCGACCCTCCTCGCCGTTGCCGGAGGCGTCGG
CAGAGGCGCCACCGTTGGCGGTGGGCGGTGCGGTGAAGGAGGGTGGAGCA
AGAGCAAGCGCGGTAGCCGCTGGCGGCGGGGGCGGAAGGTTCGATGCGAC
AACGAGCATAGGCGCGGGCGTCGGCGATACTAGCAGCGATTCGGGCTCGG
AAGATGACGCTTCCGCTGGAGCAGGAGGCCCCGGCCGGAATGTGAGAGAC
GTAATACTTCTAGTTTGTATGCATACATCCTGCGAAAGCACATGCCGTGT
GAATTCCACCGTGAATGGATCTGGCGCGCGCACGACGTATCGCGTACGCG
TAAACATGATGATGAATAGACTCTCCGTGAAATTTCTCGGGTCGCTGCTA
TTTTTTCCCCATGATTTTGTCTCAGGCAAGCTTGTTTTCTCCCCCCCTGG
GCGTGAATGACTGACTCTTTCTGCACCATGTCATTTTGTGATTCGGCAGG
ACATTACCGGAGGGCCTGGCAAGACCGTCGGCAACAGCCGCACAGCTCCT
CCTCCTCCTCCTCCTGGCCTCGCTCCCACCCCTGCTAGTGCGACTCGTGC
ATCTGCCGCTGATGCTGCAGTTGGGGGTGGCACCTCCCCCTCTTCTTCTT
CGAGCAGAACCCAAGCTGGCGCCGTCTCTGATACGTCTGCCGCTGCTGCG
GCCAACAGCAGTGGTGGGGCAGGGGGGCAGGAGATGGGCGAGACTTCGAG
TGACAGCGACGACGGCTAGGAGCGGATGATAAGATATTCTTGACCCTGTT
GAGAAACTGCAGTCGCCGCCGGGCTAGCGAGATAACCTGGCGAGGGGAAA
GGGGGGCGGCCGTTGCTTCCGGACCCGGTTAGCTCAATAAGCGGCTGGCT
TGGTCTCGTTTGGAATATGGCAGACAGCACGTGTGTCTTGAGTGGACCCT
TTCTTTAAAAAGCAGAGCAGCAACCGCCGTTTACTGGTATACCCTTGGGT
ACATTACAGTTCAATCTGGAAACGTTAAGGGGAGAGGGCAGGGTGTGTGC
GTGTGAAAGAACCCGGCTCGGTCAGGCGTCGGTCCGCGGTTGTAAACAGG
TTTGCACCTTTGCATTTTTCACCTTCTCGCCATGCTGTCGCCATGCTGTC
GTTGCCGGTTCGCTACTACTGGCGGGATGGAAGTAGTTGTAATTCTTGTG
TGCGCCTTGCGAGGGATGGCGACGATCTATGAGAACGTCTACACATACGA
TTGACCAGCAGTCAGTCGGACTTGTTTTTCGAAGTAGCTCAACCTTTCAA
TTTTGTTTTTCCCCTGCCTAACGGTTGTTTGTTGATTGGAAAAGAGCACA
CAGTGTGGCTCGTCCGCTTCTTCCTTGTGAGATGATTGCTTTTTGTGTCG
GTGTTCGAGCGCCGAGCGCACGGGGGTGTCGGAGAAAACACGTAAAAACT
AAAATGCAACCATACGATAATGAGGGTCAATTGTTTTGATTTCCCCTCTT
ACCTCCTACCGTTTGCTCTGCGCAAATCAGCATGCCGCACTAAGACAGAA
TTAAGGCACTACAAGACCCAGCCGCTGATAATGGGCATGTATGTAGTGCA
AAACATGGTGACATGGTGAAGGGTGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12674:1901..3876-

>mRNA_E-fasciculatus_F_contig12674.2042.1 ID=mRNA_E-fasciculatus_F_contig12674.2042.1|Name=mRNA_E-fasciculatus_F_contig12674.2042.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1722bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12674:1901..3876- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTATCGCCGCGTGGGAGAAAGCGCCCGGCGGACAGCATCTCAGACGCTAA
GGCGGGCGCTAGGAAGGGAAAGAAAATCGCACAAGAAACGGGGCAGCAGC
CCTCCCCCTCCGGCGAGGGTACGAGGACCGCTGCCGCCGCCTCCGCGGCG
GTCGAATCCAGCGCCGCGGCCACAACAACAACACCGCGGGTAGCTGTGGG
TGCCGCTGCGAAGAACAGAGAGGCAGCGGAGACGGGTACCTCACCCTTGC
GAGGCGATGCCAGCTCGTCATCATCAGCACGGCCATGCCTTCGTGTATCG
TCTGGTCGCAATGATCCCGCTCCCGGTACTTCCCCCGGTGAAATCTCCAA
GGCAACTGCGGCTAGTACCCGACCCTCCTCGCCGTTGCCGGAGGCGTCGG
CAGAGGCGCCACCGTTGGCGGTGGGCGGTGCGGTGAAGGAGGGTGGAGCA
AGAGCAAGCGCGGTAGCCGCTGGCGGCGGGGGCGGAAGGTTCGATGCGAC
AACGAGCATAGGCGCGGGCGTCGGCGATACTAGCAGCGATTCGGGCTCGG
AAGATGACGCTTCCGCTGGAGCAGGAGGCCCCGGCCGGAATGTATCGCCG
CGTGGGAGAAAGCGCCCGGCGGACAGCATCTCAGACGCTAAGGCGGGCGC
TAGGAAGGGAAAGAAAATCGCACAAGAAACGGGGCAGCAGCCCTCCCCCT
CCGGCGAGGGTACGAGGACCGCTGCCGCCGCCTCCGCGGCGGTCGAATCC
AGCGCCGCGGCCACAACAACAACACCGCGGGTAGCTGTGGGTGCCGCTGC
GAAGAACAGAGAGGCAGCGGAGACGGGTACCTCACCCTTGCGAGGCGATG
CCAGCTCGTCATCATCAGCACGGCCATGCCTTCGTGTATCGTCTGGTCGC
AATGATCCCGCTCCCGGTACTTCCCCCGGTGAAATCTCCAAGGCAACTGC
GGCTAGTACCCGACCCTCCTCGCCGTTGCCGGAGGCGTCGGCAGAGGCGC
CACCGTTGGCGGTGGGCGGTGCGGTGAAGGAGGGTGGAGCAAGAGCAAGC
GCGGTAGCCGCTGGCGGCGGGGGCGGAAGGTTCGATGCGACAACGAGCAT
AGGCGCGGGCGTCGGCGATACTAGCAGCGATTCGGGCTCGGAAGATGACG
CTTCCGCTGGAGCAGGAGGCCCCGGCCGGAATGACATTACCGGAGGGCCT
GGCAAGACCGTCGGCAACAGCCGCACAGCTCCTCCTCCTCCTCCTCCTGG
CCTCGCTCCCACCCCTGCTAGTGCGACTCGTGCATCTGCCGCTGATGCTG
CAGTTGGGGGTGGCACCTCCCCCTCTTCTTCTTCGAGCAGAACCCAAGCT
GGCGCCGTCTCTGATACGTCTGCCGCTGCTGCGGCCAACAGCAGTGGTGG
GGCAGGGGGGCAGGAGATGGGCGAGACTTCGAGTGACAGCGACGACGGCT
AGGACATTACCGGAGGGCCTGGCAAGACCGTCGGCAACAGCCGCACAGCT
CCTCCTCCTCCTCCTCCTGGCCTCGCTCCCACCCCTGCTAGTGCGACTCG
TGCATCTGCCGCTGATGCTGCAGTTGGGGGTGGCACCTCCCCCTCTTCTT
CTTCGAGCAGAACCCAAGCTGGCGCCGTCTCTGATACGTCTGCCGCTGCT
GCGGCCAACAGCAGTGGTGGGGCAGGGGGGCAGGAGATGGGCGAGACTTC
GAGTGACAGCGACGACGGCTAG
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