mRNA_E-fasciculatus_F_contig12668.2037.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12668.2037.1
Unique NamemRNA_E-fasciculatus_F_contig12668.2037.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12668.2037.1 vs. uniprot
Match: D7G406_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G406_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 7.090e-40
Identity = 62/79 (78.48%), Postives = 68/79 (86.08%), Query Frame = 1
Query:    1 RFTGSPFFLPFLTGTEQNNETCTCIPGPACPASPKKRENHGRGSEGFIHVHRGIQGVADLSRADYDWKNPVAEVVVAKA 237
            RFTG PF LP   GTE+NNE C+C+PG A PASPK RENHGRGSEGFIHVHRGI+GV DLS+ADYDWKNPVAEV V+KA
Sbjct:    3 RFTGPPFCLPPRKGTEKNNEKCSCMPGRAWPASPKTRENHGRGSEGFIHVHRGIKGVGDLSQADYDWKNPVAEVAVSKA 81          
BLAST of mRNA_E-fasciculatus_F_contig12668.2037.1 vs. uniprot
Match: D7G405_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G405_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 4.140e-34
Identity = 56/69 (81.16%), Postives = 60/69 (86.96%), Query Frame = 1
Query:   31 FLTGTEQNNETCTCIPGPACPASPKKRENHGRGSEGFIHVHRGIQGVADLSRADYDWKNPVAEVVVAKA 237
            F  GTE+NNE CTC+PG ACPASPK RENHGRGSEGFIHVHRGI GV DLS+ADY W NPVAEVVV+KA
Sbjct:  145 FDAGTEKNNEKCTCMPGRACPASPKTRENHGRGSEGFIHVHRGIDGVGDLSKADYGWNNPVAEVVVSKA 213          
BLAST of mRNA_E-fasciculatus_F_contig12668.2037.1 vs. uniprot
Match: D7G3Z4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z4_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 1.180e-33
Identity = 59/76 (77.63%), Postives = 63/76 (82.89%), Query Frame = 1
Query:   13 SPFFLP-FLTGTEQNNETCTCIPGPACPASPKKRENHGRGSEGFIHVHRGIQGVADLSRADYDWKNPVAEVVVAKA 237
            S  F P F  GTE+NNE CTC+PG ACPASPK RENHG GSEGFIHVHRGI GV DLS+ADY WKNPVAEVVV+KA
Sbjct:  194 SKLFPPAFDAGTEKNNEKCTCMPGRACPASPKSRENHGLGSEGFIHVHRGINGVGDLSKADYGWKNPVAEVVVSKA 269          
BLAST of mRNA_E-fasciculatus_F_contig12668.2037.1 vs. uniprot
Match: D7G413_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G413_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 2.290e-31
Identity = 59/76 (77.63%), Postives = 62/76 (81.58%), Query Frame = 1
Query:   13 SPFFLP-FLTGTEQNNETCTCIPGPACPASPKKREN-HGRGSEGFIHVHRGIQGVADLSRADYDWKNPVAEVVVAK 234
            S  F P F  GTE+NNE CTCI G ACPASPK REN  GRGSEGFIHVHRGI GV DLS+ADYDWKNPVAEVVV+K
Sbjct:  123 SKLFPPAFDAGTEKNNEKCTCIRGRACPASPKPRENLGGRGSEGFIHVHRGINGVGDLSQADYDWKNPVAEVVVSK 198          
BLAST of mRNA_E-fasciculatus_F_contig12668.2037.1 vs. uniprot
Match: D7G3Z6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z6_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 2.750e-23
Identity = 49/77 (63.64%), Postives = 56/77 (72.73%), Query Frame = 1
Query:   13 SPFFLP-FLTGTEQNNETCTCIPGPACPASPKK-RENHGRGSEGFIHVHRGIQGVADLSRADYDWKNPVAEVVVAKA 237
            S  F P F  G+E NNE CTC+PG ACP   +  RE HGR SEGFIHVHRG QG+ DLS+ DY W+NPVA VVV+KA
Sbjct:  153 SKHFPPAFDAGSETNNEKCTCMPGRACPKGTRDARERHGRNSEGFIHVHRGFQGIGDLSK-DYGWQNPVAVVVVSKA 228          
BLAST of mRNA_E-fasciculatus_F_contig12668.2037.1 vs. uniprot
Match: D7FIE5_ECTSI (Spondin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE5_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 2.850e-18
Identity = 39/68 (57.35%), Postives = 47/68 (69.12%), Query Frame = 1
Query:   31 FLTGTEQNNETCTCIPGPACPASPKKRENHGRGSEGFIHVHRGIQGVADLSRADYDWKNPVAEVVVAK 234
            F  GTE N+E C+ IPGP CPA     +N G G EG+IHVHRG+ GV DL  A YDW+NPVAE+ + K
Sbjct:  157 FDAGTEVNDERCSNIPGPGCPAGSGNNQN-GPG-EGYIHVHRGVHGVGDLEEASYDWRNPVAEIYIQK 222          
BLAST of mRNA_E-fasciculatus_F_contig12668.2037.1 vs. uniprot
Match: D7G4K4_ECTSI (Spondin domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G4K4_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 2.830e-17
Identity = 44/76 (57.89%), Postives = 49/76 (64.47%), Query Frame = 1
Query:   13 SPFFLP-FLTGTEQNNETCTCIPGPACPASPKKRENHGRGSEGFIHVHRGIQGVA-DLSRADYDWKNPVAEVVVAK 234
            S  F P F  GTE NNE CT IPGPACPA     E+     E FIHVHRG  GV  DL  A+YDW+NPVAEV +A+
Sbjct:  144 SKVFPPAFDAGTEANNELCTHIPGPACPADSGNMEDVP--GEEFIHVHRGFHGVGPDLGEANYDWRNPVAEVFIAR 217          
BLAST of mRNA_E-fasciculatus_F_contig12668.2037.1 vs. uniprot
Match: D7G4K3_ECTSI (Spondin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K3_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 5.930e-17
Identity = 47/80 (58.75%), Postives = 51/80 (63.75%), Query Frame = 1
Query:    1 RFTGSPFFLP--FLTGTEQNNETCTCIPGPACPASPKKRENHGRGSEGFIHVHRGIQGVA-DLSRADYDWKNPVAEVVVA 231
            R  G+    P  F  GTE NNE CT IPGPACPA     E+ G G EGFI V RG  GV  DL  A+YDW+NPVAEVVVA
Sbjct:  122 RLVGTEKVFPPAFDAGTEANNELCTHIPGPACPADSGNMED-GPG-EGFISVSRGFHGVGPDLGEANYDWRNPVAEVVVA 199          
BLAST of mRNA_E-fasciculatus_F_contig12668.2037.1 vs. uniprot
Match: A0A3M0Y0A2_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M0Y0A2_9PROT)

HSP 1 Score: 77.4 bits (189), Expect = 1.330e-15
Identity = 36/70 (51.43%), Postives = 45/70 (64.29%), Query Frame = 1
Query:   25 LPFLTGTEQNNETCTCIPGPACPASPKKRENHGRGSEGFIHVHRGIQGVADLSRADYDWKNPVAEVVVAK 234
            L +  G+E NNE+C  IPGP C  +    E    G+EGFIHVH G+ GVADL  AD DW+NPV  VV+ +
Sbjct:  152 LAYDAGSEANNESCDFIPGPPCNGT---NERDTAGAEGFIHVHAGVHGVADLVPADQDWRNPVLSVVIER 218          
BLAST of mRNA_E-fasciculatus_F_contig12668.2037.1 vs. uniprot
Match: A0A7S3YSB9_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YSB9_9EUKA)

HSP 1 Score: 71.6 bits (174), Expect = 2.130e-14
Identity = 36/81 (44.44%), Postives = 44/81 (54.32%), Query Frame = 1
Query:   40 GTEQNNETCTCIPGPACPASPKK-RENHGRGSEGFIHVHRGIQGVAD---------------LSRADYDWKNPVAEVVVAK 234
            GTE+NNE C+ IPGPACPA     R     G EGF+HVHRG  G+ +               LS   YDW+NP+A V + K
Sbjct:   30 GTEENNELCSFIPGPACPAGGDNLRAEPREGDEGFVHVHRGFHGINEGKVIAKKDLGASGFPLSAVRYDWRNPMARVTIYK 110          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12668.2037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G406_ECTSI7.090e-4078.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G405_ECTSI4.140e-3481.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3Z4_ECTSI1.180e-3377.63Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G413_ECTSI2.290e-3177.63Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G3Z6_ECTSI2.750e-2363.64Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7FIE5_ECTSI2.850e-1857.35Spondin domain-containing protein n=1 Tax=Ectocarp... [more]
D7G4K4_ECTSI2.830e-1757.89Spondin domain-containing protein n=3 Tax=Ectocarp... [more]
D7G4K3_ECTSI5.930e-1758.75Spondin domain-containing protein n=1 Tax=Ectocarp... [more]
A0A3M0Y0A2_9PROT1.330e-1551.43Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A7S3YSB9_9EUKA2.130e-1444.44Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12668contigE-fasciculatus_F_contig12668:2847..3086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue1.2e-14
Seed eggNOG ortholog2880.D7FIE5
EggNOG OGs28TMI@1,2S5Q9@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_000580.1
Exons1
Model size240
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927774.2602596-CDS-E-fasciculatus_F_contig12668:2846..30861622927774.2602596-CDS-E-fasciculatus_F_contig12668:2846..3086Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12668 2847..3086 +
1695995688.1670346-CDS-E-fasciculatus_F_contig12668:2846..30861695995688.1670346-CDS-E-fasciculatus_F_contig12668:2846..3086Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12668 2847..3086 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12668.2037.1prot_E-fasciculatus_F_contig12668.2037.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12668 2847..3086 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12668.2037.1

>prot_E-fasciculatus_F_contig12668.2037.1 ID=prot_E-fasciculatus_F_contig12668.2037.1|Name=mRNA_E-fasciculatus_F_contig12668.2037.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=80bp
RFTGSPFFLPFLTGTEQNNETCTCIPGPACPASPKKRENHGRGSEGFIHV
HRGIQGVADLSRADYDWKNPVAEVVVAKA*
back to top

mRNA from alignment at E-fasciculatus_F_contig12668:2847..3086+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12668.2037.1 ID=mRNA_E-fasciculatus_F_contig12668.2037.1|Name=mRNA_E-fasciculatus_F_contig12668.2037.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=240bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12668:2847..3086+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGATTCACAGGGTCTCCCTTCTTCCTACCCTTTCTCACAGGTACCGAGCA GAACAACGAGACGTGTACCTGCATCCCGGGCCCGGCATGTCCCGCAAGCC CCAAGAAGCGCGAAAATCATGGCCGTGGTTCAGAGGGCTTCATCCACGTG CACCGAGGCATCCAAGGCGTGGCAGACCTTTCGCGAGCAGACTATGACTG GAAAAACCCGGTTGCGGAGGTTGTGGTCGCTAAGGCCTAA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12668:2847..3086+

>mRNA_E-fasciculatus_F_contig12668.2037.1 ID=mRNA_E-fasciculatus_F_contig12668.2037.1|Name=mRNA_E-fasciculatus_F_contig12668.2037.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=480bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12668:2847..3086+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGATTCACAGGGTCTCCCTTCTTCCTACCCTTTCTCACAGGTACCGAGCA
GAACAACGAGACGTGTACCTGCATCCCGGGCCCGGCATGTCCCGCAAGCC
CCAAGAAGCGCGAAAATCATGGCCGTGGTTCAGAGGGCTTCATCCACGTG
CACCGAGGCATCCAAGGCGTGGCAGACCTTTCGCGAGCAGACTATGACTG
GAAAAACCCGGTTGCGGAGGTTGTGGTCGCTAAGGCCTAACGATTCACAG
GGTCTCCCTTCTTCCTACCCTTTCTCACAGGTACCGAGCAGAACAACGAG
ACGTGTACCTGCATCCCGGGCCCGGCATGTCCCGCAAGCCCCAAGAAGCG
CGAAAATCATGGCCGTGGTTCAGAGGGCTTCATCCACGTGCACCGAGGCA
TCCAAGGCGTGGCAGACCTTTCGCGAGCAGACTATGACTGGAAAAACCCG
GTTGCGGAGGTTGTGGTCGCTAAGGCCTAA
back to top