mRNA_E-fasciculatus_F_contig12656.2031.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12656.2031.1
Unique NamemRNA_E-fasciculatus_F_contig12656.2031.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12656.2031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12656contigE-fasciculatus_F_contig12656:3246..3774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size529
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12656.2031.1prot_E-fasciculatus_F_contig12656.2031.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12656 3267..3587 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927773.6768432-UTR-E-fasciculatus_F_contig12656:3245..32661622927773.6768432-UTR-E-fasciculatus_F_contig12656:3245..3266Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12656 3246..3266 +
1695995687.904071-UTR-E-fasciculatus_F_contig12656:3245..32661695995687.904071-UTR-E-fasciculatus_F_contig12656:3245..3266Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12656 3246..3266 +
1622927773.7567484-UTR-E-fasciculatus_F_contig12656:3587..37741622927773.7567484-UTR-E-fasciculatus_F_contig12656:3587..3774Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12656 3588..3774 +
1695995687.922825-UTR-E-fasciculatus_F_contig12656:3587..37741695995687.922825-UTR-E-fasciculatus_F_contig12656:3587..3774Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12656 3588..3774 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927773.693419-CDS-E-fasciculatus_F_contig12656:3266..35871622927773.693419-CDS-E-fasciculatus_F_contig12656:3266..3587Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12656 3267..3587 +
1695995687.9121783-CDS-E-fasciculatus_F_contig12656:3266..35871695995687.9121783-CDS-E-fasciculatus_F_contig12656:3266..3587Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12656 3267..3587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12656.2031.1

>prot_E-fasciculatus_F_contig12656.2031.1 ID=prot_E-fasciculatus_F_contig12656.2031.1|Name=mRNA_E-fasciculatus_F_contig12656.2031.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=107bp
MIVSPFGRKDQVDCSSSLHHTNRCVCSTRFQQIKPNPSRNNHQPQDTAAN
EGTSADNTRLHVQTNPNDGRSSCSSPSPHTSSRPRAPAVSYIYFHLCLIF
FANKKD*
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mRNA from alignment at E-fasciculatus_F_contig12656:3246..3774+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12656.2031.1 ID=mRNA_E-fasciculatus_F_contig12656.2031.1|Name=mRNA_E-fasciculatus_F_contig12656.2031.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=529bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12656:3246..3774+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGCACGTGCTGTGGACCAAGATGATTGTTTCTCCATTTGGTAGGAAGGA
TCAGGTTGATTGTTCTTCATCACTTCATCACACAAACAGGTGTGTGTGTT
CCACTCGGTTTCAACAAATCAAACCAAATCCAAGCCGCAACAACCACCAG
CCACAAGACACAGCCGCGAACGAAGGTACATCAGCAGACAACACTAGACT
ACATGTACAAACAAATCCTAACGACGGACGGTCGTCATGTTCGTCCCCAA
GCCCTCACACATCCTCACGACCCAGGGCACCTGCCGTCTCCTACATTTAT
TTCCACCTTTGCCTAATCTTCTTCGCCAACAAGAAAGACTGATATTGTAA
CATGACGACCAAACAAACACCTCGCTGGCCGCGGTTGGTGCTCCTGGTGC
GACCGGCTTGCTCATTCTTCGGCAACGGCGCAGCTCCAGCCAGAAGAAAA
AAACACAGCGGAACCCCACAACACTCAACAGTATGAATCCATCTCTGACT
TATATCCTCGACTCTTCAACTATGGGTAT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12656:3246..3774+

>mRNA_E-fasciculatus_F_contig12656.2031.1 ID=mRNA_E-fasciculatus_F_contig12656.2031.1|Name=mRNA_E-fasciculatus_F_contig12656.2031.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=642bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12656:3246..3774+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATTGTTTCTCCATTTGGTAGGAAGGATCAGGTTGATTGTTCTTCATC
ACTTCATCACACAAACAGGTGTGTGTGTTCCACTCGGTTTCAACAAATCA
AACCAAATCCAAGCCGCAACAACCACCAGCCACAAGACACAGCCGCGAAC
GAAGGTACATCAGCAGACAACACTAGACTACATGTACAAACAAATCCTAA
CGACGGACGGTCGTCATGTTCGTCCCCAAGCCCTCACACATCCTCACGAC
CCAGGGCACCTGCCGTCTCCTACATTTATTTCCACCTTTGCCTAATCTTC
TTCGCCAACAAGAAAGACTGAATGATTGTTTCTCCATTTGGTAGGAAGGA
TCAGGTTGATTGTTCTTCATCACTTCATCACACAAACAGGTGTGTGTGTT
CCACTCGGTTTCAACAAATCAAACCAAATCCAAGCCGCAACAACCACCAG
CCACAAGACACAGCCGCGAACGAAGGTACATCAGCAGACAACACTAGACT
ACATGTACAAACAAATCCTAACGACGGACGGTCGTCATGTTCGTCCCCAA
GCCCTCACACATCCTCACGACCCAGGGCACCTGCCGTCTCCTACATTTAT
TTCCACCTTTGCCTAATCTTCTTCGCCAACAAGAAAGACTGA
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