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Homology
BLAST of mRNA_E-fasciculatus_F_contig1263.2016.1 vs. uniprot
Match: D7G2I8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2I8_ECTSI) HSP 1 Score: 293 bits (749), Expect = 8.050e-99 Identity = 153/162 (94.44%), Postives = 159/162 (98.15%), Query Frame = 1
Query: 175 MEGVNPREDADFEMTVDWDEELRKLNASQYGKRQERDLTKDMNDPEAVKWARKNAKIAQSAVENSTKQVRGAMRQAPRWQTLSRDYRFWLGLVVALSLVSSIISASGRSHDLVVWNDVLGSEPFGFGEALFAHAALVAATTAHSAGDAATQLAETGAAIVFA 660
MEGVNPREDADFEMTVDWDEELRKLNASQYGKRQERDLTKDMNDPEAVKWARKNAKIAQSA+E+ TKQVRGAMR+APRWQTLSRDYRFWLGLVVALSLVSS+ISASGRSHDLVVWNDVLGSEPFG EALFAHAAL+AATTAHSAGDAATQLAETGAA+VFA
Sbjct: 1 MEGVNPREDADFEMTVDWDEELRKLNASQYGKRQERDLTKDMNDPEAVKWARKNAKIAQSAMEDRTKQVRGAMRKAPRWQTLSRDYRFWLGLVVALSLVSSVISASGRSHDLVVWNDVLGSEPFG--EALFAHAALLAATTAHSAGDAATQLAETGAAMVFA 160
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | chloroplast |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-12_001680.1 |
| Exons | 4 |
| Model size | 663 |
| Cds size | 663 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1263.2016.1 >prot_E-fasciculatus_F_contig1263.2016.1 ID=prot_E-fasciculatus_F_contig1263.2016.1|Name=mRNA_E-fasciculatus_F_contig1263.2016.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=221bp
MASSRFGLVCLGAFIFSGTQAFGVLQSRGIVTSSFAPARSLAAPTRGRSA
PGHRRSLSMEGVNPREDADFEMTVDWDEELRKLNASQYGKRQERDLTKDM
NDPEAVKWARKNAKIAQSAVENSTKQVRGAMRQAPRWQTLSRDYRFWLGL
VVALSLVSSIISASGRSHDLVVWNDVLGSEPFGFGEALFAHAALVAATTA
HSAGDAATQLAETGAAIVFA* back to topmRNA from alignment at E-fasciculatus_F_contig1263:14853..18242+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1263.2016.1 ID=mRNA_E-fasciculatus_F_contig1263.2016.1|Name=mRNA_E-fasciculatus_F_contig1263.2016.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3390bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1263:14853..18242+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCTTCTTCTCGTTTCGGCCTCGTGTGCCTCGGAGCCTTTATCTTCTC
CGGGACCCAAGCTTTTGGTGTGCTCCAGAGCAGAGGAATCGTAACGTCAA
GTTTTGCTCCTGCCAGATCTCTTGCTGCTCCAACAAGGGGTGAGTGCGTC
AATGCCTGAGCCAGACCACCATGCTCAGTTGCCCTTTCCCCTCTGGCAGC
TCAGCTTCGCCCTGCCTGACGGAGCGTTCGTCAATCGGACCTCCTGTGTT
GCGTGGTAGATCTCACGCTGTCTTGCGCGCCCTCACCGCGTTGGGGTGCT
GGTTCGTCTTGAAACGCCACGTCTTTGGCACACAGAGGTATGCAACATAC
CATGTCGCGAAGGAACATCTGACCCAGCAGAGAAATATGCAACCTATGCT
GCTGTGAGCTCGGTCAAGACCACGTTGTGTACCCGCCCCCCCCCCCCCCC
CCCCGCCCCCCGCGGTCTGTTCAACACCATCTAGGACGGTCGGCGCCTGG
ACACCGCCGGTCGCTTTCTATGGAAGGGGTAAACCCCCGCGAGGACGCGG
ATTTCGAAGTGAGTTTTGAAAATGCCGGAAAAAACACAACAGAACGGGAG
AATTTTTTGTAGTCAGTCTACAGCAGCAATGCCTGCCCTGTGCTCCGCAT
GCTCTGCACCCAAAGGGTGTTGTTGTTCACGACAAGGGTGTTGTTCACTA
CAACGCCCCCCGGCTCCACCAAGATTTAGTCGCTGATCTACAAGAACGCC
TTGCCTCTCACTTGCCTGCTTGCGTTTGATATGCTGCAATGATGATTTAT
TTTGTGAAGCGAAGCCCTGTTTTCACGTTTTCTCCTTGACCTTGTGGGCA
GGGATCAGTTTGAATACGTTTACGTTCCGCTCCTCAGTTAAAGTTGGCAA
AACACTCACTTGCTAAAACTATCTATCTACTAGTTGCATTTCATGGTGCT
TCTTTCCGGTTGCTCGATGGCTGCCGTCGACACCTTCCAGAAGAACAAAC
CGAGTGCTGTGCTAAGCGCCCGTGCCGTTACAATAGTTAACAGCAGCGAT
CAGCGCTTCAAACAGACAGAAGACACGGCGGGGATGCTGGAGATGTTTTG
TCCATCTCTTGTCTCCAAACCTTGAGGATATACGCCGACTTGTCCAAACA
GACGGGAGTGCAGTCTTAGGCTATTCTATTCGGCAGGCAGTTTTGCGCCT
GTGCGCGAACACACACATTGCCCGGCGTCCCGGTAGCACTGGAAGTAAAT
TGCCTCTCATTGCATGATGCTGGGTGTAGATGCACACACGCGTTGTTACT
GCTATCTTAAGGGGGCGCTAAAAAGGTTTCTGCTCTTAATCCAAGATATT
TTGGAGGCCCGTCATCGAGGTATCGAACACCACACTCCGGCTCAGAAAGT
GTTGGTGTTCGACGGTAGTTCGGTAGAGGGCATGATGGGGCAGCGACATG
GGCACGCGCAGATGTGTTTTTTTCTGGGGCCGCGTGGTCGAAGGCTGCAA
CTGCGGTGCCTGACGAGTCCGCAAATGTGAGTCCATACCATTCACGATCC
GTTCGCGCCGGCACAGACTCAATCCCCCGAAAGGTGGGTCGTCGAAGGCA
GCTATTTAGTGGGGTGAGCTACTGAAATGTGCACCCACAGGCCAGGAGAC
TGGGTCTTTGACGGCGCGTATAGGAGGACCGTGAATGGTATGGCCCAAGA
CTTTTCGGACCGCAGCTGCAGCCTTTCTACAGCACGATCCCTGCACCAGA
TCCGGGCGTGCTAACGCGGATGTCGCTGCTCCATCATCCATCATGTCCTC
TTTCCAATTTTGCATCGAACACCCAACACTTTGGAACGAAATTTTATCTT
TCCAGCACCCGCCGTGTCGCCTGTTCTGGAACACCAAAAGCCCGCAAGAC
TCTGCATTATCAGAGCAACACCATCGATGTATCCGTCAGTTCAAAGCCGG
GAGTAGCTCTACTCCGTTAGCCATCGCGTATATGACGTGAGAGCTCATGC
TCCTTGACAATCATGCCGCCAAAACGTAGAACGTGCGACACAGACTTGGG
TGGCTCTTGCGTTCTCTTTTATCCACAGGGTGCGTGGTGGCTAGGGACCC
ACACCATGGAGATCGCCAAGCCAACTCCAAGCGCCCACTCTCAGATTTCA
TAGCACCACCCAAGTGTCCGGTTTAGAGCGGTGTACGAGACCGACAGCCT
GGCCCCGAGAGAGCAGTTCCTGGATGGGTCTTGCAACCCTGCCTTCTCTT
ATAACCCCTCCTGCCTACAAACGTTTCCCGCTGGAGCAGATGACGGTCGA
CTGGGACGAAGAGCTGCGCAAACTTAACGCGAGCCAGTACGGGAAGCGGC
AGGAGCGCGACTTGACGAAGGACATGAACGATCCCGAGGCCGTCAAGTGG
GCCAGGAAAAACGCGAAAATCGCTCAGTCCGCCGTGGAGAACAGCACCAA
ACAGGTGACTGATGATCGAGAGAGAGAGGGAGAGAGCAGACGACAACATC
CAGAGAAGTGCCCAGCGCGGAGATAGAGCGAGATTCCGGGAATGGGCCTC
TCACGCAATTTCGGTGTGACGCTTTTTTGTGCATGGTTTTTCCCTGTCGA
GCAGGGCGATTTCGGGGAAACTTCCTCAAGTTTCTGACCAATTATTGTCG
TTGTACATGGCCTCCCGTGGCTCACCCTTCTCGCTTGTGCTGGTGTGTGC
CAAATACACACACACAAGGTATTTTGTTTCGGTGCGTGAAGATATATTCG
TTTGGCCCAGCGCTCTCCCAGTAACCTCCAACATTTTGGTCCACATCTCG
TACGTTTCGATGCCACCTGTAGCGTGTCAACACGACTGGGGAATGAGGCT
ATCGCTGCGTTTCGGGTCCGGAGGCCTGTTTGTCCTTATTTGGTAGCGCA
GCACTTCATAGTGCGCCGTGTTTTTGGCTACGACACTTTCACGTTTTGCT
CATCTCGTTTCCAGCAGCACGGCGCTCGGCAGTACCTCCTTGACCCAAGC
CGACACGCCCTTTCTGAGTTGAATGCCACCGCACACCCGACGACCAATTT
TAACTCCTCGTTCCCTCCCAACATCCACTTCGAATTCACCCAGGTTCAGG
GCCAGGTTCGGGGCGCCATGCGCCAGGCTCCCCGCTGGCAGACCCTGTCC
CGCGACTACCGATTCTGGTTGGGGCTCGTGGTGGCCCTGAGCCTGGTGTC
CTCCATCATCAGCGCCTCGGGGAGATCCCACGACCTGGTGGTGTGGAACG
ACGTTCTGGGGAGCGAGCCGTTCGGGTTCGGGGAGGCGTTGTTCGCGCAC
GCCGCGTTGGTGGCCGCGACCACCGCGCACTCCGCCGGCGACGCGGCGAC
TCAGCTGGCGGAGACCGGGGCGGCGATCGTGTTCGCGTGA back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1263:14853..18242+ >mRNA_E-fasciculatus_F_contig1263.2016.1 ID=mRNA_E-fasciculatus_F_contig1263.2016.1|Name=mRNA_E-fasciculatus_F_contig1263.2016.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1326bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1263:14853..18242+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCTTCTTCTCGTTTCGGCCTCGTGTGCCTCGGAGCCTTTATCTTCTC
CGGGACCCAAGCTTTTGGTGTGCTCCAGAGCAGAGGAATCGTAACGTCAA
GTTTTGCTCCTGCCAGATCTCTTGCTGCTCCAACAAGGGATGGCTTCTTC
TCGTTTCGGCCTCGTGTGCCTCGGAGCCTTTATCTTCTCCGGGACCCAAG
CTTTTGGTGTGCTCCAGAGCAGAGGAATCGTAACGTCAAGTTTTGCTCCT
GCCAGATCTCTTGCTGCTCCAACAAGGGGACGGTCGGCGCCTGGACACCG
CCGGTCGCTTTCTATGGAAGGGGTAAACCCCCGCGAGGACGCGGATTTCG
AAGACGGTCGGCGCCTGGACACCGCCGGTCGCTTTCTATGGAAGGGGTAA
ACCCCCGCGAGGACGCGGATTTCGAAATGACGGTCGACTGGGACGAAGAG
CTGCGCAAACTTAACGCGAGCCAGTACGGGAAGCGGCAGGAGCGCGACTT
GACGAAGGACATGAACGATCCCGAGGCCGTCAAGTGGGCCAGGAAAAACG
CGAAAATCGCTCAGTCCGCCGTGGAGAACAGCACCAAACAGATGACGGTC
GACTGGGACGAAGAGCTGCGCAAACTTAACGCGAGCCAGTACGGGAAGCG
GCAGGAGCGCGACTTGACGAAGGACATGAACGATCCCGAGGCCGTCAAGT
GGGCCAGGAAAAACGCGAAAATCGCTCAGTCCGCCGTGGAGAACAGCACC
AAACAGGTTCGGGGCGCCATGCGCCAGGCTCCCCGCTGGCAGACCCTGTC
CCGCGACTACCGATTCTGGTTGGGGCTCGTGGTGGCCCTGAGCCTGGTGT
CCTCCATCATCAGCGCCTCGGGGAGATCCCACGACCTGGTGGTGTGGAAC
GACGTTCTGGGGAGCGAGCCGTTCGGGTTCGGGGAGGCGTTGTTCGCGCA
CGCCGCGTTGGTGGCCGCGACCACCGCGCACTCCGCCGGCGACGCGGCGA
CTCAGCTGGCGGAGACCGGGGCGGCGATCGTGTTCGCGTGAGTTCGGGGC
GCCATGCGCCAGGCTCCCCGCTGGCAGACCCTGTCCCGCGACTACCGATT
CTGGTTGGGGCTCGTGGTGGCCCTGAGCCTGGTGTCCTCCATCATCAGCG
CCTCGGGGAGATCCCACGACCTGGTGGTGTGGAACGACGTTCTGGGGAGC
GAGCCGTTCGGGTTCGGGGAGGCGTTGTTCGCGCACGCCGCGTTGGTGGC
CGCGACCACCGCGCACTCCGCCGGCGACGCGGCGACTCAGCTGGCGGAGA
CCGGGGCGGCGATCGTGTTCGCGTGA back to top
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