mRNA_E-fasciculatus_F_contig12624.2012.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12624.2012.1
Unique NamemRNA_E-fasciculatus_F_contig12624.2012.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12624.2012.1 vs. uniprot
Match: D7FPM0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPM0_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 3.110e-34
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 1 
Query:    1 EAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQVGV 189
            EAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQ  V
Sbjct:    9 EAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQATV 71
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BLAST of mRNA_E-fasciculatus_F_contig12624.2012.1 vs. uniprot
Match: A0A835YTI9_9STRA (Ribosomal protein L11 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTI9_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.400e-30
Identity = 54/63 (85.71%), Postives = 59/63 (93.65%), Query Frame = 1 
Query:    1 EAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQVGV 189
            E +YV+LRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQK+T +WKGLPITVKLTI+NRQ  V
Sbjct:   10 EEKYVVLRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKSTMDWKGLPITVKLTIVNRQATV 72
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BLAST of mRNA_E-fasciculatus_F_contig12624.2012.1 vs. uniprot
Match: F0Y134_AURAN (Uncharacterized protein n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0Y134_AURAN)

HSP 1 Score: 99.0 bits (245), Expect = 7.700e-25
Identity = 44/61 (72.13%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    7 QYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQVGV 189
            +YVI+RA+GGEVG+ ++LAPK+GPLGLSPKK+GEDIQK T +WKG+ +TVKLTIINRQ  V
Sbjct:   11 KYVIMRAVGGEVGSASSLAPKIGPLGLSPKKVGEDIQKATMDWKGMNVTVKLTIINRQATV 71
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12624.2012.1 vs. uniprot
Match: A0A7M5V2G4_9CNID (60S ribosomal protein L12 n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5V2G4_9CNID)

HSP 1 Score: 97.1 bits (240), Expect = 4.390e-24
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:   10 YVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQVGV 189
            YV LRA+GGEVG T+ALAPK+GPLGLSPKK+G+DI KNT +WKGL ITVKLTI NRQ  +
Sbjct:   12 YVCLRAVGGEVGATSALAPKIGPLGLSPKKVGDDIAKNTADWKGLKITVKLTIQNRQAKI 71
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12624.2012.1 vs. uniprot
Match: A0A075B0J9_ROZAC (60S ribosomal protein L12 n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B0J9_ROZAC)

HSP 1 Score: 96.7 bits (239), Expect = 6.220e-24
Identity = 46/63 (73.02%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:    1 EAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQVGV 189
            E + ++LR +GGEVGNT+ALAPKLGPLGLSPKK+GEDI K +QEWKGL IT KLTI NRQ  V
Sbjct:    9 EVKILVLRTVGGEVGNTSALAPKLGPLGLSPKKVGEDIAKVSQEWKGLRITAKLTIQNRQATV 71
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12624.2012.1 vs. uniprot
Match: A0A261Y1F7_9FUNG (60S ribosomal protein L12 n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261Y1F7_9FUNG)

HSP 1 Score: 96.3 bits (238), Expect = 8.800e-24
Identity = 44/63 (69.84%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:    1 EAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQVGV 189
            E + + LRA GGEVG+++ALAPK+GPLGLSPKK+GEDI KNTQ+WKG+ +TVKLTI NRQ  V
Sbjct:    9 EVKVIYLRATGGEVGSSSALAPKIGPLGLSPKKVGEDIAKNTQDWKGIKVTVKLTIQNRQAQV 71
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12624.2012.1 vs. uniprot
Match: A0A7R9BL92_9CRUS (60S ribosomal protein L12 n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9BL92_9CRUS)

HSP 1 Score: 96.3 bits (238), Expect = 8.800e-24
Identity = 48/63 (76.19%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:    1 EAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQVGV 189
            E + V LRA GGEVG TA LAPK+GPLGLSPKK+GEDI K TQEWKGL ITVKLTI NRQ  V
Sbjct:    9 EVKIVYLRATGGEVGATATLAPKIGPLGLSPKKVGEDIAKATQEWKGLRITVKLTIQNRQAAV 71
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12624.2012.1 vs. uniprot
Match: M1T3E6_CERLA (60S ribosomal protein L12 n=1 Tax=Cerebratulus lacteus TaxID=6221 RepID=M1T3E6_CERLA)

HSP 1 Score: 96.3 bits (238), Expect = 8.800e-24
Identity = 46/63 (73.02%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:    1 EAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQVGV 189
            E + V+LRA+GGEVG T+ LAPK+GPLGLSPKK+G+DI K TQEWKGL ITVKLTI NRQ  V
Sbjct:    9 EIKIVVLRAVGGEVGATSTLAPKIGPLGLSPKKVGDDIAKATQEWKGLKITVKLTIQNRQATV 71
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12624.2012.1 vs. uniprot
Match: A0A7S2UAZ7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAZ7_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.720e-23
Identity = 41/63 (65.08%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:    1 EAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQVGV 189
            + Q VI+R +GGEVG+ ++LAPK+GPLGLSPKK+GEDIQK T +WKG+ +TVKLT++NRQ  V
Sbjct:    8 DVQIVIMRTVGGEVGSASSLAPKIGPLGLSPKKVGEDIQKATMDWKGMNVTVKLTVVNRQATV 70
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12624.2012.1 vs. uniprot
Match: A0A7S1XKH5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XKH5_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 2.480e-23
Identity = 43/63 (68.25%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:    1 EAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQVGV 189
            E + V++RAIGGEVG+ A+LAPKLGPLGLSPKK+GEDI+K T +WKGL +TVKL ++NRQ  V
Sbjct:   37 EEKIVVMRAIGGEVGSAASLAPKLGPLGLSPKKVGEDIKKATMDWKGLSVTVKLVVVNRQATV 99
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12624.2012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPM0_ECTSI3.110e-3496.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YTI9_9STRA1.400e-3085.71Ribosomal protein L11 n=1 Tax=Tribonema minus TaxI... [more]
F0Y134_AURAN7.700e-2572.13Uncharacterized protein n=2 Tax=Pelagomonadales Ta... [more]
A0A7M5V2G4_9CNID4.390e-2475.0060S ribosomal protein L12 n=1 Tax=Clytia hemisphae... [more]
A0A075B0J9_ROZAC6.220e-2473.0260S ribosomal protein L12 n=1 Tax=Rozella allomyci... [more]
A0A261Y1F7_9FUNG8.800e-2469.8460S ribosomal protein L12 n=1 Tax=Bifiguratus adel... [more]
A0A7R9BL92_9CRUS8.800e-2476.1960S ribosomal protein L12 n=1 Tax=Notodromas monac... [more]
M1T3E6_CERLA8.800e-2473.0260S ribosomal protein L12 n=1 Tax=Cerebratulus lac... [more]
A0A7S2UAZ7_9STRA1.720e-2365.08Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1XKH5_9STRA2.480e-2368.25Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12624contigE-fasciculatus_F_contig12624:628..816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.5
Seed ortholog evalue7.2e-26
Seed eggNOG ortholog2880.D7FPM0
Preferred namerpl12
KEGG koko:K02870
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000027,GO:0000381,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010468,GO:0015934,GO:0016043,GO:0019219,GO:0019222,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0031323,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043484,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0048024,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903311,GO:1990904
EggNOG free text desc.ribosomal large subunit assembly
EggNOG OGsCOG0080@1,KOG0886@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Ec32 ortholog description60S ribosomal protein L12
Ec32 orthologEc-16_001460.1
Exons1
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927770.9098446-CDS-E-fasciculatus_F_contig12624:627..8161622927770.9098446-CDS-E-fasciculatus_F_contig12624:627..816Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12624 628..816 -
1695995686.8778112-CDS-E-fasciculatus_F_contig12624:627..8161695995686.8778112-CDS-E-fasciculatus_F_contig12624:627..816Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12624 628..816 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12624.2012.1prot_E-fasciculatus_F_contig12624.2012.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12624 628..816 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12624.2012.1

>prot_E-fasciculatus_F_contig12624.2012.1 ID=prot_E-fasciculatus_F_contig12624.2012.1|Name=mRNA_E-fasciculatus_F_contig12624.2012.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=63bp
EAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPI
TVKLTIINRQVGV
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mRNA from alignment at E-fasciculatus_F_contig12624:628..816-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12624.2012.1 ID=mRNA_E-fasciculatus_F_contig12624.2012.1|Name=mRNA_E-fasciculatus_F_contig12624.2012.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=189bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12624:628..816- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGGCACAGTATGTGATCCTTAGGGCGATCGGGGGTGAGGTAGGAAACAC
GGCCGCCCTGGCCCCCAAGCTGGGTCCTCTGGGTCTCTCGCCCAAGAAGA
TCGGCGAGGACATCCAGAAGAACACCCAGGAGTGGAAGGGGCTCCCGATC
ACGGTCAAGCTCACCATCATCAACCGTCAGGTCGGTGTT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12624:628..816-

>mRNA_E-fasciculatus_F_contig12624.2012.1 ID=mRNA_E-fasciculatus_F_contig12624.2012.1|Name=mRNA_E-fasciculatus_F_contig12624.2012.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=378bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12624:628..816- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGGCACAGTATGTGATCCTTAGGGCGATCGGGGGTGAGGTAGGAAACAC
GGCCGCCCTGGCCCCCAAGCTGGGTCCTCTGGGTCTCTCGCCCAAGAAGA
TCGGCGAGGACATCCAGAAGAACACCCAGGAGTGGAAGGGGCTCCCGATC
ACGGTCAAGCTCACCATCATCAACCGTCAGGTCGGTGTTGAGGCACAGTA
TGTGATCCTTAGGGCGATCGGGGGTGAGGTAGGAAACACGGCCGCCCTGG
CCCCCAAGCTGGGTCCTCTGGGTCTCTCGCCCAAGAAGATCGGCGAGGAC
ATCCAGAAGAACACCCAGGAGTGGAAGGGGCTCCCGATCACGGTCAAGCT
CACCATCATCAACCGTCAGGTCGGTGTT
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